Pseudoalteromonas xiamenensis strain STKMTI.2 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
Complete Genome of Pseudoalteromonas xiamenensis STKMTI.2, a new potential marine bacterium producing anti-Vibrio compounds
Submitted (22-MAR-2021) fisheries, universitas gadjah mada, jalan flora, Sleman, Yogyakarta 55281, Indonesia
REFSEQ INFORMATION: The reference sequence is identical to\nCP072131.1.\nBacteria and source DNA available from Laboratory of Fish Health\nand Environmental Management, Fisheries Department, University of\nGadjah Mada, Yogyakarta.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 14-DEC-2020\nAssembly Method :: flye v. 2-sept-2020\nAssembly Name :: Flye software version 2.8.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 109.0x\nSequencing Technology :: Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 05:05:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,421\nCDSs (total) :: 4,288\nGenes (coding) :: 3,853\nCDSs (with protein) :: 3,853\nGenes (RNA) :: 133\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 104\nncRNAs :: 4\nPseudo Genes (total) :: 435\nCDSs (without protein) :: 435\nPseudo Genes (ambiguous residues) :: 0 of 435\nPseudo Genes (frameshifted) :: 402 of 435\nPseudo Genes (incomplete) :: 29 of 435\nPseudo Genes (internal stop) :: 17 of 435\nPseudo Genes (multiple problems) :: 11 of 435\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015913358.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025679.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005376498.1
COORDINATES: similar to AA sequence:RefSeq:WP_005426935.1
COORDINATES: similar to AA sequence:RefSeq:WP_005492163.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_010380420.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010369685.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013868265.1
COORDINATES: similar to AA sequence:RefSeq:WP_011759206.1
incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.