Mycetohabitans rhizoxinica HKI 454 plasmid pBRH02, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Mycetohabitans.
Complete genome sequence of Burkholderia rhizoxinica, an Endosymbiont of Rhizopus microsporus
Submitted (01-SEP-2010) Lackner G., Leibniz Institute for Natural Product, Research, Biomolecular Chemistry, Beutenbergstr. 11a, 07743 Jena, GERMANY
REFSEQ INFORMATION: The reference sequence is identical to\nFR687361.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 02:26:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,345\nCDSs (total) :: 3,284\nGenes (coding) :: 2,875\nCDSs (with protein) :: 2,875\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 5\nPseudo Genes (total) :: 409\nCDSs (without protein) :: 409\nPseudo Genes (ambiguous residues) :: 0 of 409\nPseudo Genes (frameshifted) :: 218 of 409\nPseudo Genes (incomplete) :: 289 of 409\nPseudo Genes (internal stop) :: 82 of 409\nPseudo Genes (multiple problems) :: 145 of 409\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013436639.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611469.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011982903.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
reverse transcriptase domain-containing protein
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611505.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006999614.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_004749343.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000560826.1
COORDINATES: similar to AA sequence:RefSeq:WP_011486848.1
type II toxin-antitoxin system RelE/ParE family toxin
DNA integration/recombination/inversion protein
Transcriptional regulator, Cro/CI family
COORDINATES: similar to AA sequence:RefSeq:WP_015002986.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013428837.1
COORDINATES: similar to AA sequence:RefSeq:WP_012508667.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875955.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875954.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343630.1
COORDINATES: similar to AA sequence:RefSeq:WP_013435576.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020458292.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012698770.1
COORDINATES: similar to AA sequence:RefSeq:WP_004421422.1
COORDINATES: similar to AA sequence:RefSeq:WP_004087087.1
COORDINATES: similar to AA sequence:RefSeq:WP_010812292.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010812291.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012703466.1
COORDINATES: similar to AA sequence:RefSeq:WP_012384641.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612266.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611481.1
COORDINATES: similar to AA sequence:RefSeq:WP_011147726.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011950655.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_086558188.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006493596.1
COORDINATES: similar to AA sequence:RefSeq:WP_009687084.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876232.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436686.1
COORDINATES: similar to AA sequence:RefSeq:WP_013435059.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242069.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242070.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242071.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR02686.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
TraI protein (DNA helicase I) (EC 3.6.1.-)
COORDINATES: protein motif:HMM:NF019350.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009242078.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723312.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242081.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242082.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_009242083.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_009277744.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_009242085.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242086.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242088.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723313.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798629.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242091.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242092.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_013436709.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_009242094.1
type-F conjugative transfer system pilin assembly protein TrbC
conjugative transfer aggregate stability protein
COORDINATES: similar to AA sequence:RefSeq:WP_011798628.1
COORDINATES: similar to AA sequence:RefSeq:WP_009277743.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242097.1
Conjugal transfer protein traF precursor
COORDINATES: similar to AA sequence:RefSeq:WP_009242098.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242099.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798627.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020651365.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723315.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242138.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013436721.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798681.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013436737.1
COORDINATES: similar to AA sequence:RefSeq:WP_013983181.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_013983182.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012213865.1
COORDINATES: similar to AA sequence:RefSeq:WP_006397350.1
IS21-like element ISBmu3 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_013428641.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691818.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_012211068.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343323.1
COORDINATES: protein motif:HMM:NF015342.2
COORDINATES: similar to AA sequence:RefSeq:WP_013436746.1
COORDINATES: similar to AA sequence:RefSeq:WP_013434223.1
COORDINATES: similar to AA sequence:RefSeq:WP_012565321.1
COORDINATES: similar to AA sequence:RefSeq:WP_009150178.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012638432.1
COORDINATES: similar to AA sequence:RefSeq:WP_015014845.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011548820.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014900788.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012760807.1
COORDINATES: similar to AA sequence:RefSeq:WP_006956727.1
COORDINATES: similar to AA sequence:RefSeq:WP_013435352.1
COORDINATES: similar to AA sequence:RefSeq:WP_013428604.1
COORDINATES: similar to AA sequence:RefSeq:WP_018914791.1
COORDINATES: similar to AA sequence:RefSeq:WP_011098375.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006028471.1
COORDINATES: similar to AA sequence:RefSeq:WP_013428509.1
2-hydroxycarboxylate transporter family protein
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: similar to AA sequence:RefSeq:WP_011695115.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011661253.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436800.1
COORDINATES: similar to AA sequence:RefSeq:WP_018952658.1
COORDINATES: similar to AA sequence:RefSeq:WP_020566548.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012467927.1
COORDINATES: similar to AA sequence:RefSeq:WP_007580625.1
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012406532.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436786.1
COORDINATES: similar to AA sequence:RefSeq:WP_006397259.1
type II toxin-antitoxin system ChpB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012734108.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF039803.1
COORDINATES: similar to AA sequence:RefSeq:WP_013428587.1
COORDINATES: similar to AA sequence:RefSeq:WP_005002740.1
COORDINATES: similar to AA sequence:RefSeq:WP_006479978.1
COORDINATES: similar to AA sequence:RefSeq:WP_007695035.1
COORDINATES: similar to AA sequence:RefSeq:WP_012338669.1
COORDINATES: similar to AA sequence:RefSeq:WP_012536826.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611480.1
COORDINATES: protein motif:HMM:NF025039.2
reverse transcriptase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013435366.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611615.1
COORDINATES: protein motif:HMM:NF012307.2
COORDINATES: protein motif:HMM:NF015355.2
GO:0008514 - organic anion transmembrane transporter activity [Evidence IEA]
GO:0015711 - organic anion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015004359.1
COORDINATES: similar to AA sequence:RefSeq:WP_013428398.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405387.1
COORDINATES: similar to AA sequence:RefSeq:WP_009906954.1
COORDINATES: similar to AA sequence:RefSeq:WP_009239173.1
COORDINATES: similar to AA sequence:RefSeq:WP_013092495.1
COORDINATES: similar to AA sequence:RefSeq:WP_013428681.1
Pseudomonapepsin precursor (EC 3.4.21.100)
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: similar to AA sequence:RefSeq:WP_014899885.1
COORDINATES: protein motif:HMM:NF033550.5