Caldithrix abyssi DSM 13497 strain LF13 chromosome, complete genome.
Bacteria; Calditrichota; Calditrichia; Calditrichales; Calditrichaceae; Caldithrix.
Genomic analysis of Caldithrix abyssi and proposal of a novel bacterial phylum Caldithrichaeota
Submitted (21-NOV-2016) Winogradsky Institute of microbiology, Federal Research Center 'Biotechnology' RAS, Prospekt 60-Let Oktyabrya 7-2, Moscow, 117312 236040, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP018099.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nBacteria and source DNA available from Winogradsky INMI RAS.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2013\nAssembly Method :: Velvet v. 1.0.13\nGenome Coverage :: 81.5x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 02:05:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,867\nCDSs (total) :: 3,815\nGenes (coding) :: 3,797\nCDSs (with protein) :: 3,797\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 1 of 18\nPseudo Genes (incomplete) :: 15 of 18\nPseudo Genes (internal stop) :: 2 of 18\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Atlantic Ocean: Mid Atlantic Ridge, Logachev
COORDINATES: protein motif:HMM:NF013413.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00663.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF000823.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: similar to AA sequence:RefSeq:WP_002379278.1
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit B
COORDINATES: protein motif:HMM:TIGR01063.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF003994.0
redox-sensing transcriptional repressor Rex
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: protein motif:HMM:NF004326.0
GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
S-methyl-5-thioribose-1-phosphate isomerase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024881.2
COORDINATES: protein motif:HMM:TIGR02937.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF012387.2
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA]
COORDINATES: protein motif:HMM:NF015559.2
GO:0052913 - 16S rRNA (guanine(966)-N(2))-methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
COORDINATES: similar to AA sequence:RefSeq:WP_016290775.1
GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
pantetheine-phosphate adenylyltransferase
COORDINATES: protein motif:HMM:TIGR00651.1
GO:0008959 - phosphate acetyltransferase activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02605.1
COORDINATES: protein motif:HMM:NF007128.0
GO:0004108 - citrate (Si)-synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: protein motif:HMM:NF024545.2
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF033709.1
COORDINATES: protein motif:HMM:NF012889.2
GO:2001070 - starch binding [Evidence IEA]
carbohydrate-binding module family 20 domain-containing protein
COORDINATES: protein motif:HMM:NF012686.2
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: protein motif:HMM:NF014080.2
helix-turn-helix domain-containing protein
GO:0003824 - catalytic activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006927714.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927392.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027047.2
interleukin-like EMT inducer domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006929573.1
COORDINATES: protein motif:HMM:NF037100.2
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF017020.2
COORDINATES: protein motif:HMM:TIGR01297.1
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:TIGR04335.1
COORDINATES: protein motif:HMM:TIGR00614.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF015948.2
COORDINATES: protein motif:HMM:NF024211.2
COORDINATES: protein motif:HMM:NF013980.2
SprT family zinc-dependent metalloprotease
COORDINATES: protein motif:HMM:TIGR00348.1
GO:0019812 - type I site-specific deoxyribonuclease complex [Evidence IEA]
GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
HsdR family type I site-specific deoxyribonuclease
COORDINATES: protein motif:HMM:NF013798.2
COORDINATES: protein motif:HMM:NF025840.2
COORDINATES: protein motif:HMM:NF013579.2
COORDINATES: protein motif:HMM:TIGR00497.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF014523.2
COORDINATES: protein motif:HMM:NF015769.2
COORDINATES: protein motif:HMM:NF015567.2
COORDINATES: protein motif:HMM:TIGR00679.1
GO:0016791 - phosphatase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00741.1
GO:0022626 - cytosolic ribosome [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA]
GO:0045182 - translation regulator activity [Evidence IEA]
GO:0009386 - translational attenuation [Evidence IEA]
ribosome-associated translation inhibitor RaiA
COORDINATES: protein motif:HMM:NF001399.0
GO:0009009 - site-specific recombinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01051.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF016264.2
COORDINATES: protein motif:HMM:TIGR00644.1
GO:0008297 - single-stranded DNA exodeoxyribonuclease activity [Evidence IEA]
single-stranded-DNA-specific exonuclease RecJ
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: protein motif:HMM:NF016267.2
COORDINATES: protein motif:HMM:NF024829.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:TIGR01350.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: protein motif:HMM:TIGR01340.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: protein motif:HMM:NF012382.2
pyridoxal phosphate-dependent aminotransferase
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: protein motif:HMM:NF003559.0
GO:0008929 - methylglyoxal synthase activity [Evidence IEA]
GO:0019242 - methylglyoxal biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04337.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
AmmeMemoRadiSam system radical SAM enzyme
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:NF025178.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF036516.2
COORDINATES: protein motif:HMM:NF014680.2
COORDINATES: protein motif:HMM:NF025885.2
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF006960.0
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024863.2
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03156.1
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018036474.1
COORDINATES: similar to AA sequence:RefSeq:WP_006929977.1
cobalamin B12-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00750.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:1903826 - L-arginine transmembrane transport [Evidence IEA]; GO:0015819 - lysine transport [Evidence IEA]; GO:0015822 - ornithine transport [Evidence IEA]
methylmalonyl Co-A mutase-associated GTPase MeaB
COORDINATES: protein motif:HMM:TIGR03081.1
COORDINATES: similar to AA sequence:RefSeq:WP_006929980.1
COORDINATES: protein motif:HMM:NF016187.2
GO:0008948 - oxaloacetate decarboxylase activity [Evidence IEA]; GO:0015081 - sodium ion transmembrane transporter activity [Evidence IEA]
GO:0036376 - sodium ion export across plasma membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF012584.2
COORDINATES: protein motif:HMM:NF015910.2
sodium ion-translocating decarboxylase subunit beta
COORDINATES: protein motif:HMM:NF005744.0
COORDINATES: protein motif:HMM:TIGR00318.1
COORDINATES: protein motif:HMM:NF016955.2
TerB family tellurite resistance protein
COORDINATES: protein motif:HMM:NF020471.2
COORDINATES: protein motif:HMM:NF013799.2
ectonucleotide pyrophosphatase/phosphodiesterase
COORDINATES: protein motif:HMM:NF014664.2
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:TIGR00797.1
COORDINATES: similar to AA sequence:RefSeq:WP_006930677.1
COORDINATES: protein motif:HMM:NF024571.2
COORDINATES: protein motif:HMM:NF025080.2
COORDINATES: protein motif:HMM:NF026220.2
COORDINATES: protein motif:HMM:NF015724.2
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
COORDINATES: protein motif:HMM:NF024777.2
COORDINATES: protein motif:HMM:TIGR04183.1
FlgD immunoglobulin-like domain containing protein
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: protein motif:HMM:NF004064.0
GO:0004126 - cytidine deaminase activity [Evidence IEA]
GO:0008655 - pyrimidine-containing compound salvage [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00235.1
GO:0004849 - uridine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000280860.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019285.2
nucleoside transporter C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00705.1
GO:0008233 - peptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF006054.0
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: protein motif:HMM:NF017076.2
COORDINATES: protein motif:HMM:NF015953.2
COORDINATES: protein motif:HMM:NF024703.2
COORDINATES: protein motif:HMM:NF014651.2
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: protein motif:HMM:NF004491.0
GO:0004743 - pyruvate kinase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02170.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01083.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013543.2
COORDINATES: protein motif:HMM:TIGR00813.1
COORDINATES: protein motif:HMM:NF021942.2
COORDINATES: protein motif:HMM:TIGR00544.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_018051019.1
cytidine/deoxycytidylate deaminase family protein
COORDINATES: protein motif:HMM:NF001095.0
COORDINATES: protein motif:HMM:NF008909.0
GO:0004333 - fumarate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00723.1
GO:0016836 - hydro-lyase activity [Evidence IEA]
FumA C-terminus/TtdB family hydratase beta subunit
COORDINATES: protein motif:HMM:TIGR00722.1
COORDINATES: protein motif:HMM:NF013056.2
COORDINATES: protein motif:HMM:NF018530.2
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
TrkA C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:TIGR00040.1
COORDINATES: protein motif:HMM:NF017496.2
COORDINATES: protein motif:HMM:NF012787.2
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF019265.2
COORDINATES: protein motif:HMM:TIGR01128.1
COORDINATES: protein motif:HMM:NF037979.1
COORDINATES: protein motif:HMM:NF014703.2
COORDINATES: protein motif:HMM:NF012675.2
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019244433.1
COORDINATES: protein motif:HMM:NF001484.0
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: protein motif:HMM:NF000848.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00087.1
GO:0008252 - nucleotidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00515.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: protein motif:HMM:TIGR01575.1
GO:0008999 - peptide-alanine-alpha-N-acetyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]; GO:0042254 - ribosome biogenesis [Evidence IEA]
ribosomal protein S18-alanine N-acetyltransferase
COORDINATES: protein motif:HMM:TIGR03725.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: protein motif:HMM:TIGR00150.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: protein motif:HMM:TIGR00050.1
COORDINATES: protein motif:HMM:TIGR00230.1
GO:0000023 - maltose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_006927373.1
COORDINATES: similar to AA sequence:RefSeq:WP_006928205.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006927370.1
COORDINATES: similar to AA sequence:RefSeq:WP_006928218.1
COORDINATES: similar to AA sequence:RefSeq:WP_006928219.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006928201.1
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: similar to AA sequence:RefSeq:WP_006928195.1
COORDINATES: similar to AA sequence:RefSeq:WP_006928193.1
host-nuclease inhibitor Gam family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006928188.1
COORDINATES: protein motif:HMM:NF025456.2
COORDINATES: protein motif:HMM:NF018011.2
COORDINATES: protein motif:HMM:NF037249.2
COORDINATES: protein motif:HMM:NF017850.2
COORDINATES: similar to AA sequence:RefSeq:WP_006927341.1
COORDINATES: similar to AA sequence:RefSeq:WP_006928223.1
COORDINATES: similar to AA sequence:RefSeq:WP_006928224.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927324.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006927322.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927321.1
COORDINATES: similar to AA sequence:RefSeq:WP_006928167.1
COORDINATES: protein motif:HMM:NF015722.2
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_006928165.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927317.1
COORDINATES: similar to AA sequence:RefSeq:WP_006928225.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927315.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927314.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927313.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927312.1
COORDINATES: protein motif:HMM:NF009397.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005834312.1
COORDINATES: protein motif:HMM:NF019325.2
COORDINATES: protein motif:HMM:NF018024.2
COORDINATES: protein motif:HMM:NF006562.0
COORDINATES: protein motif:HMM:NF005741.0
dihydroorotate dehydrogenase-like protein
COORDINATES: protein motif:HMM:TIGR02176.1
GO:0005506 - iron ion binding [Evidence IEA]; GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
pyruvate:ferredoxin (flavodoxin) oxidoreductase
COORDINATES: protein motif:HMM:NF014912.2
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: protein motif:HMM:NF013661.2
peptidoglycan recognition family protein
COORDINATES: protein motif:HMM:TIGR00224.1
GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01383.1
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: similar to AA sequence:RefSeq:WP_006927061.1
COORDINATES: protein motif:HMM:NF016289.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025092.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006931023.1
COORDINATES: similar to AA sequence:RefSeq:WP_006931022.1
COORDINATES: protein motif:HMM:NF014675.2
COORDINATES: protein motif:HMM:NF013670.2
COORDINATES: protein motif:HMM:NF014533.2
COORDINATES: protein motif:HMM:TIGR01930.1
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: protein motif:HMM:NF013200.2
electron transfer flavoprotein subunit beta/FixA family protein
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: protein motif:HMM:NF024116.2
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF027890.2
COORDINATES: protein motif:HMM:NF001208.0
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: protein motif:HMM:NF040105.1
COORDINATES: protein motif:HMM:TIGR00048.1
GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020543.2
COORDINATES: protein motif:HMM:TIGR02195.1
GO:0008920 - lipopolysaccharide heptosyltransferase activity [Evidence IEA]
GO:0009244 - lipopolysaccharide core region biosynthetic process [Evidence IEA]
lipopolysaccharide heptosyltransferase II
COORDINATES: protein motif:HMM:TIGR00057.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: protein motif:HMM:NF012711.2
class I adenylate-forming enzyme family protein
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF014658.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013460.2
COORDINATES: protein motif:HMM:NF025875.2
COORDINATES: protein motif:HMM:NF012790.2
rhodanese-like domain-containing protein
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: protein motif:HMM:NF024644.2
4Fe-4S dicluster domain-containing protein
COORDINATES: protein motif:HMM:NF008133.0
COORDINATES: protein motif:HMM:NF014176.2
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF013743.2
COORDINATES: protein motif:HMM:NF009381.0
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: protein motif:HMM:NF023395.2
COORDINATES: protein motif:HMM:TIGR01224.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00976.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001206281.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012369.2
COORDINATES: protein motif:HMM:NF013665.2
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_416952.2
ethanolamine utilization microcompartment protein EutM
COORDINATES: similar to AA sequence:RefSeq:WP_006928328.1
COORDINATES: protein motif:HMM:NF011927.0
COORDINATES: protein motif:HMM:NF011660.0
GO:0005515 - protein binding [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]
COORDINATES: protein motif:HMM:NF013662.2
COORDINATES: protein motif:HMM:NF013129.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:TIGR02504.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: protein motif:HMM:NF014614.2
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: protein motif:HMM:NF012437.2
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: protein motif:HMM:NF039953.1
COORDINATES: protein motif:HMM:NF039992.1
COORDINATES: protein motif:HMM:NF014589.2
COORDINATES: protein motif:HMM:NF012863.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006928352.1
outer membrane protein transport protein
COORDINATES: similar to AA sequence:RefSeq:WP_006928350.1
COORDINATES: protein motif:HMM:NF002772.0
GO:0008878 - glucose-1-phosphate adenylyltransferase activity [Evidence IEA]
GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01617.1
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:NF021438.2
COORDINATES: protein motif:HMM:NF024054.2
COORDINATES: protein motif:HMM:TIGR01292.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006928432.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012393.2
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: protein motif:HMM:NF014325.2
COORDINATES: protein motif:HMM:NF013700.2
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: protein motif:HMM:NF002806.0
COORDINATES: protein motif:HMM:NF012544.2
COORDINATES: protein motif:HMM:NF015515.2
COORDINATES: protein motif:HMM:NF040439.1
COORDINATES: protein motif:HMM:NF013567.2
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF013570.2
COORDINATES: protein motif:HMM:NF027589.2
COORDINATES: protein motif:HMM:NF014566.2
type II CAAX endopeptidase family protein
COORDINATES: protein motif:HMM:NF012797.2
COORDINATES: protein motif:HMM:NF012861.2
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: protein motif:HMM:NF012579.2
COORDINATES: protein motif:HMM:NF012436.2
DNA starvation/stationary phase protection protein
COORDINATES: protein motif:HMM:TIGR00198.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF013629.2
COORDINATES: protein motif:HMM:NF017913.2
phosphate-starvation-inducible PsiE family protein
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016290037.1
GO:0009368 - endopeptidase Clp complex [Evidence IEA]
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
ATP-dependent Clp endopeptidase proteolytic subunit ClpP
COORDINATES: protein motif:HMM:NF003745.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit ClpX
COORDINATES: protein motif:HMM:TIGR00763.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006928410.1
MauE/DoxX family redox-associated membrane protein
COORDINATES: protein motif:HMM:NF028479.2
COORDINATES: similar to AA sequence:RefSeq:WP_006928405.1
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: protein motif:HMM:NF017200.2
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF018508.2
COORDINATES: protein motif:HMM:NF014762.2
metal-dependent transcriptional regulator
T9SS type A sorting domain-containing protein
COORDINATES: protein motif:HMM:NF012695.2
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: protein motif:HMM:NF012471.2
COORDINATES: protein motif:HMM:NF018963.2
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF037961.1
GO:0008360 - regulation of cell shape [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03423.1
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03426.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: protein motif:HMM:NF016011.2
COORDINATES: similar to AA sequence:RefSeq:WP_007115517.1
COORDINATES: protein motif:HMM:NF036772.2
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF016763.2
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: protein motif:HMM:TIGR00420.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009245056.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004847070.1
GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024791.2
LytR C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00090.1
GO:0043022 - ribosome binding [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00456.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012515.2
hybrid sensor histidine kinase/response regulator
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: protein motif:HMM:NF018938.2
COORDINATES: protein motif:HMM:NF037015.2
COORDINATES: protein motif:HMM:NF025734.2
COORDINATES: protein motif:HMM:NF013117.2
COORDINATES: protein motif:HMM:NF012656.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF015039.2
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018743.2
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: protein motif:HMM:TIGR00914.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: protein motif:HMM:TIGR00229.1
PAS domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF018455.2
COORDINATES: protein motif:HMM:NF037429.2
COORDINATES: protein motif:HMM:NF015674.2
COORDINATES: protein motif:HMM:NF013143.2
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002349238.1
metal ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013465.2
GO:0046872 - metal ion binding [Evidence IEA]
zinc ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006928515.1
COORDINATES: protein motif:HMM:NF021601.2
COORDINATES: protein motif:HMM:NF013921.2
GO:0004756 - selenide, water dikinase activity [Evidence IEA]
GO:0001887 - selenium compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF015927.2
COORDINATES: protein motif:HMM:NF022466.2
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: protein motif:HMM:NF012568.2
COORDINATES: protein motif:HMM:NF019309.2
GO:0048511 - rhythmic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013736.2
COORDINATES: protein motif:HMM:TIGR00148.1
COORDINATES: protein motif:HMM:NF025173.2
COORDINATES: protein motif:HMM:NF019604.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: protein motif:HMM:TIGR00361.1
GO:0009290 - DNA import into cell involved in transformation [Evidence IEA]
DNA internalization-related competence protein ComEC/Rec2
COORDINATES: protein motif:HMM:NF024118.2
metal ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF006941.0
COORDINATES: similar to AA sequence:RefSeq:WP_013934792.1
COORDINATES: protein motif:HMM:NF022985.2
COORDINATES: protein motif:HMM:NF024871.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF023428.2
replication-associated recombination protein A
COORDINATES: protein motif:HMM:NF004349.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00139.1
GO:0009085 - lysine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021354.2
DUF4097 family beta strand repeat-containing protein
COORDINATES: protein motif:HMM:NF002018.0
GO:0008124 - 4-alpha-hydroxytetrahydrobiopterin dehydratase activity [Evidence IEA]
GO:0006729 - tetrahydrobiopterin biosynthetic process [Evidence IEA]
4a-hydroxytetrahydrobiopterin dehydratase
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF015325.2
COORDINATES: protein motif:HMM:NF013761.2
COORDINATES: protein motif:HMM:TIGR02074.1
GO:0008658 - penicillin binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024821.2
COORDINATES: protein motif:HMM:NF025490.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF002003.0
GO:0003905 - alkylbase DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF013704.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025864.2
PmeII family type II restriction endonuclease
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: protein motif:HMM:TIGR00092.1
COORDINATES: protein motif:HMM:NF014605.2
COORDINATES: protein motif:HMM:NF013524.2
COORDINATES: protein motif:HMM:NF033788.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_016293345.1
COORDINATES: protein motif:HMM:NF024376.2
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: protein motif:HMM:NF016326.2
COORDINATES: protein motif:HMM:NF014038.2
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014073.2
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF013982.2
COORDINATES: protein motif:HMM:NF019042.2
COORDINATES: protein motif:HMM:NF013125.2
COORDINATES: protein motif:HMM:NF018659.2
SdiA-regulated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016291381.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021981.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00539.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00149.1
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: protein motif:HMM:NF022188.2
COORDINATES: protein motif:HMM:TIGR01856.1
GO:0004401 - histidinol-phosphatase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024773.2
COORDINATES: protein motif:HMM:NF014066.2
COORDINATES: protein motif:HMM:NF014017.2
COORDINATES: protein motif:HMM:NF022039.2
COORDINATES: protein motif:HMM:NF018884.2
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00377.1
PP2C family protein-serine/threonine phosphatase
COORDINATES: protein motif:HMM:NF001380.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]; GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013586.2
GO:0016805 - dipeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF009897.0
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]
branched-chain amino acid aminotransferase
COORDINATES: protein motif:HMM:NF024143.2
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF015155.2
COORDINATES: protein motif:HMM:NF025736.2
COORDINATES: protein motif:HMM:NF028441.2
outer membrane lipoprotein-sorting protein
COORDINATES: protein motif:HMM:NF013365.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit omega
COORDINATES: protein motif:HMM:NF019581.2
COORDINATES: protein motif:HMM:NF033573.1
COORDINATES: protein motif:HMM:NF013046.2
COORDINATES: protein motif:HMM:NF001453.0
GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
protein-L-isoaspartate(D-aspartate) O-methyltransferase
COORDINATES: protein motif:HMM:NF014244.2
COORDINATES: protein motif:HMM:NF000908.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00464.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF011405.0
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01499.1
folylpolyglutamate synthase/dihydrofolate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017492510.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008186 - ATP-dependent activity, acting on RNA [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003151132.1
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF018798.2
COORDINATES: similar to AA sequence:RefSeq:WP_003202249.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006929897.1
COORDINATES: protein motif:HMM:NF019958.2
COORDINATES: protein motif:HMM:NF016488.2
COORDINATES: protein motif:HMM:NF014460.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF024484.2
COORDINATES: protein motif:HMM:NF013283.2
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: protein motif:HMM:NF015168.2
COORDINATES: protein motif:HMM:TIGR01771.1
GO:0004459 - L-lactate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037183.2
permease-like cell division protein FtsX
COORDINATES: protein motif:HMM:TIGR02673.1
GO:0000910 - cytokinesis [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013382.2
COORDINATES: protein motif:HMM:NF024909.2
COORDINATES: protein motif:HMM:NF021347.2
COORDINATES: protein motif:HMM:TIGR01533.1
GO:0009279 - cell outer membrane [Evidence IEA]
5'-nucleotidase, lipoprotein e(P4) family
COORDINATES: similar to AA sequence:RefSeq:WP_005377116.1
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: protein motif:HMM:NF041131.1
regulatory iron-sulfur-containing complex subunit RicT
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: similar to AA sequence:RefSeq:WP_003218092.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00530.1
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: protein motif:HMM:NF015448.2
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
phenylalanine--tRNA ligase beta subunit-related protein
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: protein motif:HMM:NF012888.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00277.1
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: protein motif:HMM:NF012478.2
FKBP-type peptidyl-prolyl cis-trans isomerase
COORDINATES: protein motif:HMM:TIGR01486.1
COORDINATES: protein motif:HMM:NF006375.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00182.1
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01048.1
GO:0008836 - diaminopimelate decarboxylase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00492.1
GO:0008784 - alanine racemase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027445.2
COORDINATES: similar to AA sequence:RefSeq:WP_003564285.1
COORDINATES: protein motif:HMM:TIGR01382.1
COORDINATES: protein motif:HMM:NF023299.2
COORDINATES: protein motif:HMM:NF016251.2
COORDINATES: protein motif:HMM:NF014619.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00498.1
GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF016424.2
COORDINATES: protein motif:HMM:NF015944.2
COORDINATES: protein motif:HMM:TIGR04336.1
COORDINATES: protein motif:HMM:NF003198.0
GO:0047294 - phosphoglycerol geranylgeranyltransferase activity [Evidence IEA]
GO:0006650 - glycerophospholipid metabolic process [Evidence IEA]
geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase
COORDINATES: protein motif:HMM:NF024969.2
COORDINATES: protein motif:HMM:NF027681.2
COORDINATES: protein motif:HMM:TIGR00608.1
COORDINATES: protein motif:HMM:NF012789.2
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: protein motif:HMM:NF012372.2
COORDINATES: protein motif:HMM:NF024977.2
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024988.2
COORDINATES: protein motif:HMM:NF014012.2
COORDINATES: protein motif:HMM:NF015993.2
GO:0015075 - monoatomic ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter complex subunit F
COORDINATES: protein motif:HMM:NF009314.0
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: protein motif:HMM:NF024641.2
COORDINATES: protein motif:HMM:NF015970.2
COORDINATES: protein motif:HMM:NF012636.2
COORDINATES: protein motif:HMM:NF012581.2
proton-conducting transporter membrane subunit
COORDINATES: protein motif:HMM:NF012373.2
COORDINATES: protein motif:HMM:NF005012.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoB
COORDINATES: protein motif:HMM:NF012549.2
COORDINATES: protein motif:HMM:NF012566.2
COORDINATES: protein motif:HMM:TIGR01307.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: protein motif:HMM:NF014494.2
COORDINATES: protein motif:HMM:NF015411.2
NAD(P)-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00067.1
GO:0008881 - glutamate racemase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033711.1
COORDINATES: protein motif:HMM:NF008955.0
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00732.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002415046.1
sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016291044.1
GO:0004355 - glutamate synthase (NADPH) activity [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002677.0
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024874.2
COORDINATES: protein motif:HMM:TIGR00400.1
GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00755.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: protein motif:HMM:TIGR00010.1
COORDINATES: protein motif:HMM:NF001100.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024214.2
COORDINATES: protein motif:HMM:TIGR00176.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
molybdopterin-guanine dinucleotide biosynthesis protein B
COORDINATES: protein motif:HMM:NF012241.2
COORDINATES: protein motif:HMM:NF011494.0
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0001510 - RNA methylation [Evidence IEA]
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
COORDINATES: protein motif:HMM:TIGR00959.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016424889.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016290937.1
COORDINATES: protein motif:HMM:TIGR02273.1
GO:0006364 - rRNA processing [Evidence IEA]
Essential for efficient processing of 16S rRNA; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00088.1
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: similar to AA sequence:RefSeq:WP_004415194.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF037017.2
COORDINATES: protein motif:HMM:TIGR00652.1
GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018894.2
COORDINATES: protein motif:HMM:NF019335.2
COORDINATES: similar to AA sequence:RefSeq:WP_006928861.1
COORDINATES: similar to AA sequence:RefSeq:WP_006928862.1
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: protein motif:HMM:NF019912.2
COORDINATES: similar to AA sequence:RefSeq:WP_001354009.1
COORDINATES: protein motif:HMM:NF024574.2
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: protein motif:HMM:NF012562.2
COORDINATES: protein motif:HMM:NF019344.2
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: protein motif:HMM:NF013134.2
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_006930201.1
COORDINATES: protein motif:HMM:NF014758.2
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: protein motif:HMM:NF025019.2
COORDINATES: similar to AA sequence:RefSeq:WP_016448881.1
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF016274.2
GO:0004668 - protein-arginine deiminase activity [Evidence IEA]
GO:0009446 - putrescine biosynthetic process [Evidence IEA]
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:TIGR00029.2
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001040566.1
COORDINATES: similar to AA sequence:RefSeq:WP_001265708.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00922.1
transcription termination/antitermination protein NusG
COORDINATES: similar to AA sequence:RefSeq:WP_002484165.1
COORDINATES: similar to AA sequence:RefSeq:WP_003225765.1
COORDINATES: protein motif:HMM:NF000955.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001273587.1
COORDINATES: protein motif:HMM:TIGR02013.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: protein motif:HMM:TIGR02386.1
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_005306278.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054923.1
COORDINATES: similar to AA sequence:RefSeq:WP_005229047.1
COORDINATES: similar to AA sequence:RefSeq:WP_012084982.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002351833.1
COORDINATES: protein motif:HMM:TIGR03953.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF012498.2
COORDINATES: similar to AA sequence:RefSeq:WP_004924105.1
COORDINATES: similar to AA sequence:RefSeq:WP_009001861.1
COORDINATES: similar to AA sequence:RefSeq:WP_018590372.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003278.1
COORDINATES: similar to AA sequence:RefSeq:WP_013340739.1
COORDINATES: similar to AA sequence:RefSeq:WP_003403594.1
COORDINATES: similar to AA sequence:RefSeq:WP_016660790.1
COORDINATES: similar to AA sequence:RefSeq:WP_007073026.1
COORDINATES: similar to AA sequence:RefSeq:WP_016293496.1
COORDINATES: similar to AA sequence:RefSeq:WP_018376779.1
COORDINATES: similar to AA sequence:RefSeq:WP_011245027.1
COORDINATES: similar to AA sequence:RefSeq:WP_009754342.1
COORDINATES: similar to AA sequence:RefSeq:WP_017722933.1
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002461779.1
COORDINATES: similar to AA sequence:RefSeq:WP_014973704.1
COORDINATES: similar to AA sequence:RefSeq:WP_041604457.1
COORDINATES: similar to AA sequence:RefSeq:WP_015539819.1
COORDINATES: protein motif:HMM:TIGR00967.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00500.1
COORDINATES: similar to AA sequence:RefSeq:WP_003130554.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020322760.1
COORDINATES: similar to AA sequence:RefSeq:WP_000090796.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004633577.1
COORDINATES: similar to AA sequence:RefSeq:WP_004410410.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF003513.0
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_007085264.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:NF013731.2
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: protein motif:HMM:NF019236.2
GO:0015291 - secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013843.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF014021.2
COORDINATES: protein motif:HMM:NF014043.2
COORDINATES: protein motif:HMM:NF021558.2
COORDINATES: protein motif:HMM:NF024886.2
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF012211.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03006.1
COORDINATES: protein motif:HMM:NF011650.0
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB
COORDINATES: protein motif:HMM:TIGR00740.1
GO:0008168 - methyltransferase activity [Evidence IEA]
carboxy-S-adenosyl-L-methionine synthase CmoA
COORDINATES: protein motif:HMM:NF012314.2
COORDINATES: protein motif:HMM:TIGR03545.1
COORDINATES: protein motif:HMM:TIGR03546.1
COORDINATES: protein motif:HMM:NF013791.2
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: protein motif:HMM:NF013502.2
CheB methylesterase domain-containing protein
COORDINATES: protein motif:HMM:NF014763.2
GO:0007165 - signal transduction [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF013867.2
protein-glutamate O-methyltransferase CheR
COORDINATES: protein motif:HMM:NF006695.0
GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008623.0
bifunctional nicotinamidase/pyrazinamidase
COORDINATES: protein motif:HMM:NF007024.0
GO:0008705 - methionine synthase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006930208.1
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
COORDINATES: protein motif:HMM:NF025679.2
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF015971.2
COORDINATES: protein motif:HMM:NF012906.2
COORDINATES: protein motif:HMM:NF008113.2
GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0002100 - tRNA wobble adenosine to inosine editing [Evidence IEA]
COORDINATES: protein motif:HMM:NF014606.2
COORDINATES: similar to AA sequence:RefSeq:WP_016291874.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006929023.1
COORDINATES: similar to AA sequence:RefSeq:WP_006929022.1
COORDINATES: protein motif:HMM:NF019542.2
COORDINATES: protein motif:HMM:NF014732.2
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
Wzz/FepE/Etk N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014051.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: protein motif:HMM:NF028199.2
COORDINATES: protein motif:HMM:NF014453.2
COORDINATES: protein motif:HMM:TIGR03570.1
GO:0016740 - transferase activity [Evidence IEA]
NeuD/PglB/VioB family sugar acetyltransferase
COORDINATES: protein motif:HMM:NF013227.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: protein motif:HMM:NF014740.2
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: protein motif:HMM:NF021507.2
phosphodiester glycosidase family protein
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF016260.2
translocation/assembly module TamB domain-containing protein
COORDINATES: protein motif:HMM:NF012420.2
COORDINATES: protein motif:HMM:NF014385.2
COORDINATES: protein motif:HMM:NF013188.2
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
monovalent cation:proton antiporter family protein
COORDINATES: protein motif:HMM:NF007111.0
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF025006.2
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00162
SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR01326.1
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
COORDINATES: protein motif:HMM:NF001209.0
GO:0004414 - homoserine O-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00657.1
GO:0004072 - aspartate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013782.2
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016163.2
COORDINATES: protein motif:HMM:NF013219.2
COORDINATES: protein motif:HMM:NF018095.2
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: protein motif:HMM:TIGR01529.1
GO:0006525 - arginine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03960.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
TIGR03960 family B12-binding radical SAM protein
COORDINATES: protein motif:HMM:TIGR00757.1
GO:0004540 - ribonuclease activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000457386.1
COORDINATES: similar to AA sequence:RefSeq:WP_015818156.1
COORDINATES: protein motif:HMM:NF022577.2
COORDINATES: protein motif:HMM:NF022720.2
COORDINATES: similar to AA sequence:RefSeq:WP_020063210.1
COORDINATES: similar to AA sequence:RefSeq:WP_002942223.1
COORDINATES: protein motif:HMM:TIGR01011.1
COORDINATES: similar to AA sequence:RefSeq:WP_018286770.1
COORDINATES: protein motif:HMM:TIGR02075.1
GO:0033862 - UMP kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00496.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03025.1
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: protein motif:HMM:TIGR01007.1
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03019.1
GO:0005575 - cellular_component [Evidence IEA]
FemAB family PEP-CTERM system-associated protein
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: protein motif:HMM:NF015013.2
COORDINATES: protein motif:HMM:NF021387.2
GO:0050043 - lactate racemase activity [Evidence IEA]
lactate racemase domain-containing protein
COORDINATES: protein motif:HMM:NF013672.2
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF013255.2
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:NF019846.2
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: protein motif:HMM:NF013226.2
COORDINATES: similar to AA sequence:RefSeq:WP_006929123.1
COORDINATES: protein motif:HMM:NF025229.2
COORDINATES: protein motif:HMM:NF022443.2
COORDINATES: protein motif:HMM:NF013491.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
PEP/pyruvate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF016027.2
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: protein motif:HMM:NF006942.0
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: protein motif:HMM:NF024179.2
COORDINATES: protein motif:HMM:NF014307.2
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: protein motif:HMM:NF012383.2
COORDINATES: protein motif:HMM:NF005413.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
FliA/WhiG family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF015344.2
GO:0015232 - heme transmembrane transporter activity [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0015886 - heme transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013725.2
COORDINATES: protein motif:HMM:TIGR04391.1
COORDINATES: protein motif:HMM:NF015085.2
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0017003 - protein-heme linkage [Evidence IEA]
COORDINATES: protein motif:HMM:NF027651.2
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010993399.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012434.2
COORDINATES: protein motif:HMM:NF014439.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0051302 - regulation of cell division [Evidence IEA]
division/cell wall cluster transcriptional repressor MraZ
COORDINATES: protein motif:HMM:TIGR00006.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: protein motif:HMM:NF013100.2
COORDINATES: protein motif:HMM:NF001126.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
COORDINATES: protein motif:HMM:TIGR01143.1
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
COORDINATES: protein motif:HMM:TIGR00445.1
GO:0008963 - phospho-N-acetylmuramoyl-pentapeptide-transferase activity [Evidence IEA]
phospho-N-acetylmuramoyl-pentapeptide- transferase
COORDINATES: protein motif:HMM:TIGR01087.1
GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
COORDINATES: protein motif:HMM:TIGR02614.1
GO:0051301 - cell division [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01133.1
GO:0050511 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity [Evidence IEA]
undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
COORDINATES: protein motif:HMM:TIGR01082.1
GO:0008763 - UDP-N-acetylmuramate-L-alanine ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015739.2
FtsQ-type POTRA domain-containing protein
COORDINATES: protein motif:HMM:TIGR01174.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0043093 - FtsZ-dependent cytokinesis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00065.1
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: protein motif:HMM:TIGR02795.1
COORDINATES: protein motif:HMM:NF014534.2
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: protein motif:HMM:NF024898.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013862.2
COORDINATES: protein motif:HMM:NF003766.0
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0008973 - phosphopentomutase activity [Evidence IEA]
GO:0043094 - cellular metabolic compound salvage [Evidence IEA]; GO:0009117 - nucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004328839.1
COORDINATES: protein motif:HMM:NF021127.2
COORDINATES: protein motif:HMM:TIGR00135.1
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: protein motif:HMM:TIGR00466.1
GO:0008690 - 3-deoxy-manno-octulosonate cytidylyltransferase activity [Evidence IEA]
3-deoxy-manno-octulosonate cytidylyltransferase
COORDINATES: protein motif:HMM:NF003792.0
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: protein motif:HMM:NF012534.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF014164.2
GO:0004177 - aminopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF041103.1
diphosphate--fructose-6-phosphate 1-phosphotransferase
COORDINATES: protein motif:HMM:TIGR00731.1
GO:0008097 - 5S rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF013368.2
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001960.0
COORDINATES: protein motif:HMM:TIGR00166.1
COORDINATES: similar to AA sequence:RefSeq:WP_018108318.1
COORDINATES: protein motif:HMM:TIGR00158.1
COORDINATES: protein motif:HMM:NF004066.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF025690.2
COORDINATES: protein motif:HMM:NF028512.2
COORDINATES: protein motif:HMM:NF015232.2
COORDINATES: protein motif:HMM:NF012255.2
COORDINATES: protein motif:HMM:NF023128.2
COORDINATES: protein motif:HMM:NF024876.2
COORDINATES: protein motif:HMM:NF013979.2
GO:0008792 - arginine decarboxylase activity [Evidence IEA]
GO:0006527 - arginine catabolic process [Evidence IEA]; GO:0006596 - polyamine biosynthetic process [Evidence IEA]
arginine decarboxylase, pyruvoyl-dependent
COORDINATES: protein motif:HMM:TIGR01230.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020660.2
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00225.1
COORDINATES: protein motif:HMM:NF013760.2
MotA/TolQ/ExbB proton channel family protein
COORDINATES: protein motif:HMM:NF014525.2
COORDINATES: similar to AA sequence:RefSeq:WP_006928214.1
COORDINATES: protein motif:HMM:TIGR00147.1
diacylglycerol kinase family lipid kinase
COORDINATES: protein motif:HMM:NF024675.2
COORDINATES: protein motif:HMM:NF010589.0
COORDINATES: protein motif:HMM:NF017774.2
COORDINATES: protein motif:HMM:NF016206.2
COORDINATES: protein motif:HMM:TIGR02037.1
COORDINATES: protein motif:HMM:NF001413.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024212.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024989.2
NADPH:quinone oxidoreductase family protein
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: protein motif:HMM:NF012575.2
COORDINATES: protein motif:HMM:NF025016.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
cytochrome b N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025890.2
COORDINATES: protein motif:HMM:NF016064.2
YeeE/YedE thiosulfate transporter family protein
COORDINATES: protein motif:HMM:NF025940.2
COORDINATES: protein motif:HMM:NF012602.2
COORDINATES: protein motif:HMM:NF025066.2
COORDINATES: protein motif:HMM:TIGR03342.1
TusE/DsrC/DsvC family sulfur relay protein
COORDINATES: protein motif:HMM:NF019464.2
COORDINATES: protein motif:HMM:NF024902.2
COORDINATES: protein motif:HMM:NF024579.2
SurA N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025674.2
COORDINATES: protein motif:HMM:NF021351.2
COORDINATES: protein motif:HMM:NF025598.2
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: protein motif:HMM:NF024973.2
COORDINATES: protein motif:HMM:NF016895.2
COORDINATES: protein motif:HMM:NF002872.1
GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014615.2
homocysteine S-methyltransferase family protein
COORDINATES: protein motif:HMM:NF014375.2
Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017532.2
phytanoyl-CoA dioxygenase family protein
COORDINATES: protein motif:HMM:NF013381.2
GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
uroporphyrinogen decarboxylase family protein
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: protein motif:HMM:NF027889.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001884.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0016151 - nickel cation binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0010045 - response to nickel cation [Evidence IEA]
nickel-responsive transcriptional regulator NikR
COORDINATES: protein motif:HMM:NF014420.2
energy-coupling factor transporter transmembrane component T
COORDINATES: protein motif:HMM:NF015684.2
COORDINATES: protein motif:HMM:TIGR04408.1
GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015920 - lipopolysaccharide transport [Evidence IEA]
LPS export ABC transporter permease LptG
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: protein motif:HMM:NF012343.2
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: protein motif:HMM:NF013936.2
COORDINATES: protein motif:HMM:NF018242.2
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03139.1
GO:0033739 - preQ1 synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013411.2
COORDINATES: similar to AA sequence:RefSeq:WP_006928111.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006929904.1
PLP-dependent aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:NF013927.2
COORDINATES: protein motif:HMM:NF014477.2
COORDINATES: protein motif:HMM:TIGR00517.1
GO:0000036 - acyl carrier activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024938.2
COORDINATES: protein motif:HMM:TIGR00502.1
GO:0004342 - glucosamine-6-phosphate deaminase activity [Evidence IEA]
GO:0006046 - N-acetylglucosamine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF027638.2
COORDINATES: protein motif:HMM:NF012457.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF040149.1
COORDINATES: similar to AA sequence:RefSeq:WP_002336979.1
GO:0004124 - cysteine synthase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: protein motif:HMM:NF006799.0
COORDINATES: protein motif:HMM:NF015639.2
COORDINATES: protein motif:HMM:NF014910.2
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF015585.2
COORDINATES: protein motif:HMM:NF019887.2
COORDINATES: protein motif:HMM:TIGR04312.1
fibronectin type III domain-containing protein
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:NF013166.2
COORDINATES: protein motif:HMM:NF015578.2
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: protein motif:HMM:NF004282.0
GO:0031177 - phosphopantetheine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016370.2
COORDINATES: protein motif:HMM:NF003417.0
COORDINATES: protein motif:HMM:NF037016.2
COORDINATES: similar to AA sequence:RefSeq:WP_006926922.1
COORDINATES: similar to AA sequence:RefSeq:WP_006929434.1
COORDINATES: protein motif:HMM:NF021474.2
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: protein motif:HMM:NF012901.2
COORDINATES: protein motif:HMM:NF012957.2
hybrid non-ribosomal peptide synthetase/type I polyketide synthase
COORDINATES: similar to AA sequence:RefSeq:WP_016291309.1
GO:0050242 - pyruvate, phosphate dikinase activity [Evidence IEA]
GO:0015976 - carbon utilization [Evidence IEA]
COORDINATES: protein motif:HMM:NF025042.2
COORDINATES: protein motif:HMM:NF013836.2
COORDINATES: protein motif:HMM:TIGR00536.1
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: protein motif:HMM:TIGR02063.1
GO:0008997 - ribonuclease R activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008686.0
cyclopropane fatty acyl phospholipid synthase
COORDINATES: protein motif:HMM:NF003820.0
GO:0016153 - urocanate hydratase activity [Evidence IEA]
B12-binding domain-containing radical SAM protein
COORDINATES: protein motif:HMM:NF001030.0
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF000711.0
GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IEA]
crossover junction endodeoxyribonuclease RuvC
COORDINATES: protein motif:HMM:NF001040.0
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: similar to AA sequence:RefSeq:WP_001837006.1
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:TIGR00113.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: protein motif:HMM:TIGR01205.1
COORDINATES: protein motif:HMM:TIGR00435.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024734.2
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006929637.1
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF018852.2
GO:0009288 - bacterial-type flagellum [Evidence IEA]
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: protein motif:HMM:NF015602.2
COORDINATES: protein motif:HMM:NF015894.2
COORDINATES: protein motif:HMM:NF001965.0
chemotaxis response regulator protein-glutamate methylesterase
COORDINATES: protein motif:HMM:NF015908.2
COORDINATES: protein motif:HMM:NF025070.2
COORDINATES: protein motif:HMM:NF023326.2
COORDINATES: protein motif:HMM:NF020252.2
COORDINATES: protein motif:HMM:TIGR01396.1
GO:0009429 - bacterial-type flagellum basal body, proximal rod [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01395.1
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00205.1
flagellar hook-basal body complex protein FliE
COORDINATES: protein motif:HMM:TIGR00206.1
GO:0009431 - bacterial-type flagellum basal body, MS ring [Evidence IEA]
flagellar basal-body MS-ring/collar protein FliF
COORDINATES: protein motif:HMM:TIGR00207.1
GO:0009433 - bacterial-type flagellum basal body, C ring [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF014196.2
COORDINATES: protein motif:HMM:TIGR01026.1
COORDINATES: protein motif:HMM:TIGR02473.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0003774 - cytoskeletal motor activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]; GO:0006935 - chemotaxis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02530.1
TIGR02530 family flagellar biosynthesis protein
COORDINATES: protein motif:HMM:TIGR03506.1
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: protein motif:HMM:NF015693.2
flagellar basal body-associated FliL family protein
COORDINATES: protein motif:HMM:TIGR01397.1
COORDINATES: protein motif:HMM:TIGR02480.1
COORDINATES: protein motif:HMM:NF016250.2
COORDINATES: similar to AA sequence:RefSeq:WP_018050304.1
The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar type III secretion system pore protein FliP
COORDINATES: similar to AA sequence:RefSeq:WP_018035963.1
COORDINATES: protein motif:HMM:TIGR01400.1
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00328.1
COORDINATES: similar to AA sequence:RefSeq:WP_018035960.1
COORDINATES: protein motif:HMM:NF012662.2
GTP-binding signal recognition particle SRP54 G- domain-containing protein
COORDINATES: protein motif:HMM:TIGR02490.1
COORDINATES: protein motif:HMM:TIGR02488.1
GO:0009426 - bacterial-type flagellum basal body, distal rod [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03170.1
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]
flagellar basal body P-ring formation chaperone FlgA
COORDINATES: protein motif:HMM:NF014195.2
flagellar basal body L-ring protein FlgH
COORDINATES: protein motif:HMM:NF014206.2
flagellar basal body P-ring protein FlgI
COORDINATES: protein motif:HMM:NF016985.2
COORDINATES: protein motif:HMM:TIGR02492.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
COORDINATES: protein motif:HMM:NF012874.2
COORDINATES: protein motif:HMM:NF021616.2
TPR domain-containing glycosyltransferase
COORDINATES: protein motif:HMM:NF013426.2
(2Fe-2S) ferredoxin domain-containing protein
COORDINATES: protein motif:HMM:NF024634.2
COORDINATES: protein motif:HMM:NF014904.2
[Fe-Fe] hydrogenase large subunit C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024586.2
COORDINATES: protein motif:HMM:TIGR04105.1
COORDINATES: protein motif:HMM:TIGR01770.1
COORDINATES: protein motif:HMM:TIGR01972.1
COORDINATES: protein motif:HMM:NF005141.0
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF004320.0
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoK
COORDINATES: protein motif:HMM:NF012709.2
COORDINATES: protein motif:HMM:NF024247.2
COORDINATES: protein motif:HMM:NF004741.0
NADH-quinone oxidoreductase subunit NuoH
COORDINATES: protein motif:HMM:NF008974.0
COORDINATES: similar to AA sequence:RefSeq:WP_000236330.1
COORDINATES: protein motif:HMM:NF012717.2
COORDINATES: protein motif:HMM:NF013868.2
COORDINATES: protein motif:HMM:NF017964.2
glycogen debranching enzyme N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00056.1
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF005500.0
GO:0008714 - AMP nucleosidase activity [Evidence IEA]
GO:0044209 - AMP salvage [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00009.1
COORDINATES: protein motif:HMM:NF027971.2
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: protein motif:HMM:NF020044.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016189.2
COORDINATES: similar to AA sequence:RefSeq:WP_002340613.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00071.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006929619.1
GO:0016832 - aldehyde-lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006929618.1
COORDINATES: protein motif:HMM:NF012318.2
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:NF003678.0
GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
phosphatidylserine decarboxylase family protein
COORDINATES: protein motif:HMM:TIGR00473.1
GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IEA]
CDP-diacylglycerol--serine O-phosphatidyltransferase
COORDINATES: protein motif:HMM:NF014470.2
twin-arginine translocase TatA/TatE family subunit
COORDINATES: protein motif:HMM:TIGR00132.1
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
COORDINATES: protein motif:HMM:TIGR00133.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
geranylgeranylglycerol-phosphate geranylgeranyltransferase
COORDINATES: protein motif:HMM:TIGR00172.1
COORDINATES: protein motif:HMM:NF018228.2
COORDINATES: protein motif:HMM:NF013741.2
COORDINATES: similar to AA sequence:RefSeq:WP_008632889.1
COORDINATES: protein motif:HMM:NF020463.2
COORDINATES: similar to AA sequence:RefSeq:WP_006929484.1
COORDINATES: protein motif:HMM:NF015563.2
COORDINATES: protein motif:HMM:NF022551.2
COORDINATES: protein motif:HMM:NF015999.2
COORDINATES: protein motif:HMM:NF020317.2
COORDINATES: protein motif:HMM:TIGR00218.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013256.2
GO:0004559 - alpha-mannosidase activity [Evidence IEA]
GO:0006013 - mannose metabolic process [Evidence IEA]
glycoside hydrolase family 38 C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF008277.0
COORDINATES: similar to AA sequence:RefSeq:WP_005834565.1
COORDINATES: protein motif:HMM:NF024299.2
COORDINATES: protein motif:HMM:TIGR00030.1
COORDINATES: protein motif:HMM:NF020977.2
COORDINATES: protein motif:HMM:NF014704.2
COORDINATES: protein motif:HMM:TIGR01069.1
GO:0030983 - mismatched DNA binding [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: protein motif:HMM:NF016924.2
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF025141.2
GO:0015074 - DNA integration [Evidence IEA]
phage integrase N-terminal SAM-like domain-containing protein
COORDINATES: protein motif:HMM:NF012417.2
COORDINATES: protein motif:HMM:NF021253.2
COORDINATES: protein motif:HMM:TIGR00005.1
COORDINATES: protein motif:HMM:TIGR00077.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006927012.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00392.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016959.2
COORDINATES: protein motif:HMM:TIGR00044.1
YggS family pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF023376.2
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: protein motif:HMM:NF016146.2
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013560.2
GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008241 - peptidyl-dipeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013992.2
COORDINATES: protein motif:HMM:NF014228.2
Sir2 family NAD-dependent protein deacetylase
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: similar to AA sequence:RefSeq:WP_020257696.1
COORDINATES: similar to AA sequence:RefSeq:WP_009252629.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00613.1
COORDINATES: protein motif:HMM:TIGR03999.1
GO:0071793 - bacillithiol biosynthetic process [Evidence IEA]
N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
COORDINATES: protein motif:HMM:NF012512.2
COORDINATES: protein motif:HMM:NF003947.0
GO:0004068 - aspartate 1-decarboxylase activity [Evidence IEA]
GO:0006523 - alanine biosynthetic process [Evidence IEA]
GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]
GO:0006821 - chloride transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016293395.1
COORDINATES: protein motif:HMM:NF019317.2
COORDINATES: protein motif:HMM:TIGR00043.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00474.1
GO:0004125 - L-seryl-tRNASec selenium transferase activity [Evidence IEA]
GO:0016260 - selenocysteine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014156.2
COORDINATES: similar to AA sequence:RefSeq:WP_006929770.1
COORDINATES: similar to AA sequence:RefSeq:WP_006929768.1
COORDINATES: protein motif:HMM:NF014312.2
COORDINATES: protein motif:HMM:NF027442.2
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: protein motif:HMM:TIGR00167.1
COORDINATES: protein motif:HMM:NF020069.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF019625.2
class II D-tagatose-bisphosphate aldolase, non-catalytic subunit
COORDINATES: protein motif:HMM:NF013539.2
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF040755.1
COORDINATES: protein motif:HMM:NF015692.2
ADP-ribosylglycohydrolase family protein
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: protein motif:HMM:NF017050.2
GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
carboxypeptidase regulatory-like domain-containing protein
COORDINATES: protein motif:HMM:NF004397.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: protein motif:HMM:NF024753.2
COORDINATES: protein motif:HMM:TIGR03710.1
2-oxoacid:acceptor oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:TIGR02177.1
2-oxoacid:ferredoxin oxidoreductase subunit beta
COORDINATES: protein motif:HMM:NF012621.2
COORDINATES: protein motif:HMM:NF006416.0
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00526.1
GO:0004150 - dihydroneopterin aldolase activity [Evidence IEA]
GO:0006760 - folic acid-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01498.1
GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase
COORDINATES: similar to AA sequence:RefSeq:WP_020054414.1
COORDINATES: protein motif:HMM:NF003015.0
COORDINATES: protein motif:HMM:NF020476.2
COORDINATES: protein motif:HMM:TIGR01141.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008171.0
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0042301 - phosphate ion binding [Evidence IEA]
GO:0035435 - phosphate ion transmembrane transport [Evidence IEA]
phosphate ABC transporter substrate-binding protein PstS
COORDINATES: protein motif:HMM:TIGR02138.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter permease subunit PstC
COORDINATES: protein motif:HMM:TIGR00974.1
COORDINATES: similar to AA sequence:RefSeq:WP_004810563.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: protein motif:HMM:TIGR02135.1
GO:0051049 - regulation of transport [Evidence IEA]
phosphate signaling complex protein PhoU
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: protein motif:HMM:NF012966.2
GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01850.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: protein motif:HMM:NF012899.2
GO:0003991 - acetylglutamate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013696.2
COORDINATES: protein motif:HMM:TIGR00838.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:NF008730.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01317.1
COORDINATES: protein motif:HMM:TIGR00112.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006930951.1
COORDINATES: protein motif:HMM:NF013179.2
COORDINATES: protein motif:HMM:NF013123.2
DPP IV N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013345.2
COORDINATES: protein motif:HMM:NF014598.2
COORDINATES: protein motif:HMM:NF014433.2
COORDINATES: protein motif:HMM:NF001236.0
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003191.0
COORDINATES: similar to AA sequence:RefSeq:WP_006927882.1
COORDINATES: protein motif:HMM:NF024436.2
penicillin-binding protein activator LpoB
COORDINATES: protein motif:HMM:NF014248.2
COORDINATES: protein motif:HMM:NF014443.2
COORDINATES: protein motif:HMM:NF007039.0
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF007825.0
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00178.1
GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039786.1
COORDINATES: protein motif:HMM:TIGR00437.1
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015956.2
GO:0046914 - transition metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014620.2
NifB/NifX family molybdenum-iron cluster-binding protein
COORDINATES: protein motif:HMM:NF025716.2
COORDINATES: protein motif:HMM:NF021485.2
COORDINATES: similar to AA sequence:RefSeq:WP_006927965.1
COORDINATES: protein motif:HMM:NF015715.2
COORDINATES: protein motif:HMM:TIGR00412.2
MTH895/ArsE family thioredoxin-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_011967356.1
COORDINATES: protein motif:HMM:NF006707.0
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024786.2
4Fe-4S cluster-binding domain-containing protein
COORDINATES: protein motif:HMM:NF008865.0
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006928692.1
COORDINATES: protein motif:HMM:NF015237.2
COORDINATES: protein motif:HMM:NF021109.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013237.2
COORDINATES: protein motif:HMM:NF012804.2
class II aldolase/adducin family protein
COORDINATES: protein motif:HMM:NF027716.2
COORDINATES: protein motif:HMM:NF014071.2
hydantoinase/oxoprolinase family protein
COORDINATES: protein motif:HMM:NF011291.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]
glutamine--tRNA ligase/YqeY domain fusion protein
COORDINATES: protein motif:HMM:NF014590.2
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002465978.1
GO:0047348 - glycerol-3-phosphate cytidylyltransferase activity [Evidence IEA]
glycerol-3-phosphate cytidylyltransferase
COORDINATES: protein motif:HMM:NF016357.2
GO:0047355 - CDP-glycerol glycerophosphotransferase activity [Evidence IEA]
CDP-glycerol glycerophosphotransferase family protein
NTP transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006822499.1
COORDINATES: protein motif:HMM:NF024779.2
cytochrome b/b6 domain-containing protein
COORDINATES: protein motif:HMM:NF015588.2
beta-phosphoglucomutase family hydrolase
COORDINATES: protein motif:HMM:NF012697.2
COORDINATES: protein motif:HMM:TIGR03346.1
COORDINATES: similar to AA sequence:RefSeq:WP_014461314.1
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00416.1
COORDINATES: similar to AA sequence:RefSeq:WP_016110865.1
COORDINATES: protein motif:HMM:TIGR00810.1
COORDINATES: protein motif:HMM:NF016115.2
COORDINATES: similar to AA sequence:RefSeq:WP_001573017.1
COORDINATES: protein motif:HMM:TIGR01777.1
COORDINATES: protein motif:HMM:TIGR00368.1
YifB family Mg chelatase-like AAA ATPase
COORDINATES: protein motif:HMM:NF015451.2
COORDINATES: protein motif:HMM:TIGR00100.1
GO:0008901 - ferredoxin hydrogenase activity [Evidence IEA]
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_009567566.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: protein motif:HMM:TIGR00143.1
GO:0003998 - acylphosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018009.2
PDDEXK nuclease domain-containing protein
COORDINATES: protein motif:HMM:TIGR00074.1
HypC/HybG/HupF family hydrogenase formation chaperone
COORDINATES: protein motif:HMM:TIGR00075.1
GO:0016530 - metallochaperone activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02124.1
hydrogenase expression/formation protein HypE
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: similar to AA sequence:RefSeq:WP_006927485.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927484.1
COORDINATES: protein motif:HMM:NF024759.2
COORDINATES: similar to AA sequence:RefSeq:WP_006927481.1
COORDINATES: protein motif:HMM:NF024812.2
COORDINATES: protein motif:HMM:NF013933.2
GO:0006865 - amino acid transport [Evidence IEA]
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF025946.2
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: similar to AA sequence:RefSeq:WP_003210962.1
GO:0004049 - anthranilate synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00566.1
aminodeoxychorismate/anthranilate synthase component II
COORDINATES: protein motif:HMM:TIGR01245.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001377.0
GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA]
GO:0006568 - tryptophan metabolic process [Evidence IEA]
indole-3-glycerol phosphate synthase TrpC
COORDINATES: protein motif:HMM:NF012900.2
COORDINATES: similar to AA sequence:RefSeq:WP_018036536.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00262.1
COORDINATES: protein motif:HMM:NF022750.2
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: protein motif:HMM:NF006914.0
GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
2-oxoglutarate dehydrogenase E1 component
COORDINATES: similar to AA sequence:RefSeq:WP_000179874.1
GO:0045252 - oxoglutarate dehydrogenase complex [Evidence IEA]
GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence IEA]
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase
COORDINATES: protein motif:HMM:TIGR00072.1
COORDINATES: similar to AA sequence:RefSeq:WP_012302733.1
COORDINATES: protein motif:HMM:NF013242.2
COORDINATES: similar to AA sequence:RefSeq:WP_013822581.1
COORDINATES: protein motif:HMM:NF014774.2
CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein
COORDINATES: protein motif:HMM:NF024581.2
COORDINATES: protein motif:HMM:NF015746.2
GO:0015558 - secondary active p-aminobenzoyl-glutamate transmembrane transporter activity [Evidence IEA]
GO:1902604 - p-aminobenzoyl-glutamate transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00936.1
GO:0004013 - adenosylhomocysteinase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015941.2
COORDINATES: protein motif:HMM:NF001696.0
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase subunit GcvPA
COORDINATES: protein motif:HMM:NF003346.0
aminomethyl-transferring glycine dehydrogenase subunit GcvPB
COORDINATES: similar to AA sequence:RefSeq:WP_011303857.1
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
pyridoxal 5'-phosphate synthase lyase subunit PdxS
COORDINATES: protein motif:HMM:TIGR03800.1
pyridoxal 5'-phosphate synthase glutaminase subunit PdxT
COORDINATES: protein motif:HMM:NF012428.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF041095.1
GO:0005507 - copper ion binding [Evidence IEA]
GO:0010038 - response to metal ion [Evidence IEA]
COORDINATES: protein motif:HMM:NF013197.2
COORDINATES: protein motif:HMM:TIGR01439.1
COORDINATES: protein motif:HMM:TIGR00835.1
COORDINATES: protein motif:HMM:NF014062.2
COORDINATES: protein motif:HMM:NF014850.2
COORDINATES: protein motif:HMM:NF012961.2
COORDINATES: protein motif:HMM:NF012907.2
COORDINATES: protein motif:HMM:NF018190.2
COORDINATES: protein motif:HMM:NF013126.2
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012377.2
COORDINATES: protein motif:HMM:NF024240.2
GDSL-type esterase/lipase family protein
COORDINATES: protein motif:HMM:NF013961.2
transglutaminase-like domain-containing protein
COORDINATES: protein motif:HMM:NF014516.2
COORDINATES: protein motif:HMM:NF014442.2
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: protein motif:HMM:TIGR03527.1
sulfurtransferase-like selenium metabolism protein YedF
COORDINATES: protein motif:HMM:NF015078.2
COORDINATES: protein motif:HMM:TIGR02669.1
COORDINATES: protein motif:HMM:TIGR00007.1
GO:0003949 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase activity [Evidence IEA]
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase
COORDINATES: protein motif:HMM:NF013168.2
GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisF
COORDINATES: similar to AA sequence:RefSeq:WP_002494590.1
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]; GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: protein motif:HMM:NF003543.0
GO:0008676 - 3-deoxy-8-phosphooctulonate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014068.2
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: protein motif:HMM:TIGR01670.1
COORDINATES: protein motif:HMM:TIGR00393.1
GO:0016853 - isomerase activity [Evidence IEA]
KpsF/GutQ family sugar-phosphate isomerase
COORDINATES: protein motif:HMM:TIGR04409.1
LPS export ABC transporter periplasmic protein LptC
COORDINATES: protein motif:HMM:NF015901.2
COORDINATES: similar to AA sequence:RefSeq:WP_004091254.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
LPS export ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013319.2
COORDINATES: protein motif:HMM:NF014058.2
COORDINATES: protein motif:HMM:NF040164.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01055
molybdenum cofactor riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR02666.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF002947.1
bifunctional molybdenum cofactor biosynthesis protein MoaC/MoaB
COORDINATES: protein motif:HMM:NF015418.2
COORDINATES: protein motif:HMM:NF015438.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014101.2
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF036294.2
COORDINATES: protein motif:HMM:NF020400.2
COORDINATES: protein motif:HMM:TIGR01536.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: protein motif:HMM:NF002048.0
GO:0008795 - NAD+ synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00342.1
GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF021551.2
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: protein motif:HMM:NF015728.2
RAMP superfamily CRISPR-associated protein
COORDINATES: protein motif:HMM:TIGR04423.1
TIGR04423 family type III CRISPR-associated protein
COORDINATES: protein motif:HMM:TIGR03986.1
TIGR03986 family CRISPR-associated RAMP protein
COORDINATES: protein motif:HMM:NF021006.2
COORDINATES: protein motif:HMM:NF025181.2
COORDINATES: protein motif:HMM:NF012348.2
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019845.2
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF021619.2
PocR ligand-binding domain-containing protein
COORDINATES: protein motif:HMM:NF015316.2
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: protein motif:HMM:TIGR00738.1
COORDINATES: protein motif:HMM:NF008773.0
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002514361.1
COORDINATES: protein motif:HMM:TIGR01981.1
COORDINATES: protein motif:HMM:TIGR01994.1
SUF system NifU family Fe-S cluster assembly protein
COORDINATES: protein motif:HMM:TIGR02945.1
SUF system Fe-S cluster assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_020359689.1
COORDINATES: protein motif:HMM:NF019850.2
COORDINATES: protein motif:HMM:TIGR00653.1
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012725.2
COORDINATES: protein motif:HMM:NF018004.2
COORDINATES: protein motif:HMM:NF012492.2
COORDINATES: protein motif:HMM:NF024873.2
ribonuclease H-like domain-containing protein
COORDINATES: protein motif:HMM:NF025743.2
COORDINATES: protein motif:HMM:TIGR00023.1
GO:0008374 - O-acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsY
COORDINATES: similar to AA sequence:RefSeq:WP_016290911.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0047952 - glycerol-3-phosphate dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0046168 - glycerol-3-phosphate catabolic process [Evidence IEA]
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF012791.2
GO:0008797 - aspartate ammonia-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003673.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF014026.2
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015239.2
GO:0017111 - ribonucleoside triphosphate phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006930177.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
Most members of this family contain a selenocysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR02436.1
COORDINATES: protein motif:HMM:NF014049.2
COORDINATES: protein motif:HMM:TIGR00396.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012925.2
COORDINATES: protein motif:HMM:NF009555.0
YgeY family selenium metabolism-linked hydrolase
COORDINATES: protein motif:HMM:NF012412.2
COORDINATES: protein motif:HMM:TIGR00857.1
GO:0004151 - dihydroorotase activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017953226.1
COORDINATES: protein motif:HMM:TIGR03315.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
putative selenate reductase subunit YgfK
COORDINATES: similar to AA sequence:RefSeq:YP_499390.1
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
COORDINATES: protein motif:HMM:NF006367.0
COORDINATES: protein motif:HMM:TIGR00531.1
acetyl-CoA carboxylase biotin carboxyl carrier protein
COORDINATES: protein motif:HMM:NF012993.2
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_009256459.1
COORDINATES: protein motif:HMM:NF001220.0
COORDINATES: protein motif:HMM:NF015289.2
EutN/CcmL family microcompartment protein
COORDINATES: protein motif:HMM:TIGR00836.1
COORDINATES: protein motif:HMM:NF012753.2
COORDINATES: protein motif:HMM:TIGR00080.1
COORDINATES: protein motif:HMM:NF025715.2
COORDINATES: protein motif:HMM:NF014200.2
GO:0004175 - endopeptidase activity [Evidence IEA]; GO:0009002 - serine-type D-Ala-D-Ala carboxypeptidase activity [Evidence IEA]
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_016535194.1
COORDINATES: protein motif:HMM:NF028290.2
COORDINATES: protein motif:HMM:NF013607.2
COORDINATES: protein motif:HMM:NF012257.2
cyclic nucleotide-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00728.1
GO:0035673 - oligopeptide transmembrane transporter activity [Evidence IEA]
GO:0006857 - oligopeptide transport [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF018058.2
COORDINATES: protein motif:HMM:TIGR00332.1
COORDINATES: protein motif:HMM:NF014345.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family glutamic-type intramembrane protease
COORDINATES: protein motif:HMM:NF005314.0
COORDINATES: protein motif:HMM:NF012385.2
COORDINATES: protein motif:HMM:TIGR00585.2
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00174.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: protein motif:HMM:TIGR01891.1
aspartate/glutamate racemase family protein
COORDINATES: protein motif:HMM:NF001908.0
GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]
GO:0006165 - nucleoside diphosphate phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00475.1
GO:0001514 - selenocysteine incorporation [Evidence IEA]; GO:0006414 - translational elongation [Evidence IEA]
selenocysteine-specific translation elongation factor
COORDINATES: protein motif:HMM:NF024839.2
COORDINATES: protein motif:HMM:NF015863.2
PepSY-associated TM helix domain-containing protein
COORDINATES: protein motif:HMM:NF020553.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012699.2
COORDINATES: protein motif:HMM:TIGR01511.1
COORDINATES: protein motif:HMM:NF021378.2
COORDINATES: protein motif:HMM:NF016060.2
COORDINATES: protein motif:HMM:TIGR01293.1
COORDINATES: protein motif:HMM:NF004051.0
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: protein motif:HMM:NF013594.2
heavy metal-associated domain-containing protein
COORDINATES: protein motif:HMM:TIGR00545.1
biotin/lipoate A/B protein ligase family protein
COORDINATES: protein motif:HMM:NF015530.2
COORDINATES: protein motif:HMM:NF021021.2
COORDINATES: protein motif:HMM:NF012470.2
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: protein motif:HMM:NF021141.2
COORDINATES: protein motif:HMM:NF020337.2
COORDINATES: protein motif:HMM:NF014965.2
GO:0030412 - formimidoyltetrahydrofolate cyclodeaminase activity [Evidence IEA]; GO:0030409 - glutamate formimidoyltransferase activity [Evidence IEA]
GO:0019556 - histidine catabolic process to glutamate and formamide [Evidence IEA]
COORDINATES: protein motif:HMM:NF019242.2
COORDINATES: protein motif:HMM:NF024627.2
COORDINATES: protein motif:HMM:NF006628.0
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF037962.1
COORDINATES: protein motif:HMM:NF020489.2
threonyl-tRNA synthetase editing domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002387688.1
COORDINATES: protein motif:HMM:NF027675.2
COORDINATES: protein motif:HMM:NF027592.2
COORDINATES: protein motif:HMM:NF019292.2
nucleoside recognition domain-containing protein
COORDINATES: protein motif:HMM:NF033768.1
AgmX/PglI C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00152.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016290.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]
Ni/Fe-hydrogenase, b-type cytochrome subunit
COORDINATES: protein motif:HMM:NF012592.2
nickel-dependent hydrogenase large subunit
COORDINATES: protein motif:HMM:TIGR00391.1
COORDINATES: protein motif:HMM:TIGR04315.1
tetrathionate reductase family octaheme c-type cytochrome
COORDINATES: protein motif:HMM:NF013767.2
COORDINATES: protein motif:HMM:NF014608.2
COORDINATES: protein motif:HMM:NF002834.0
GO:0047761 - butyrate kinase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]
COORDINATES: protein motif:HMM:NF006045.0
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: protein motif:HMM:NF007233.1
COORDINATES: similar to AA sequence:RefSeq:WP_002443355.1
NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF026177.2
COORDINATES: protein motif:HMM:NF024827.2
COORDINATES: protein motif:HMM:TIGR03723.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: protein motif:HMM:NF019561.2
COORDINATES: protein motif:HMM:NF014003.2
COORDINATES: protein motif:HMM:NF002211.1
GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020801803.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012503.2
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012931.2
COORDINATES: protein motif:HMM:NF014670.2
COORDINATES: protein motif:HMM:NF024877.2
reductive dehalogenase domain-containing protein
COORDINATES: protein motif:HMM:NF017007.2
COORDINATES: protein motif:HMM:NF016107.2
COORDINATES: protein motif:HMM:TIGR00594.1
glycosyl hydrolase family 28-related protein
COORDINATES: protein motif:HMM:TIGR01855.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisH
COORDINATES: protein motif:HMM:NF003937.0
GO:0004401 - histidinol-phosphatase activity [Evidence IEA]; GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IEA]
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB
COORDINATES: protein motif:HMM:NF013013.2
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00070.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013384.2
COORDINATES: similar to AA sequence:RefSeq:WP_000207596.1
COORDINATES: protein motif:HMM:NF013920.2
Zn-ribbon domain-containing OB-fold protein
COORDINATES: protein motif:HMM:NF004720.0
COORDINATES: protein motif:HMM:TIGR00748.1
COORDINATES: protein motif:HMM:NF013995.2
COORDINATES: protein motif:HMM:NF022812.2
COORDINATES: protein motif:HMM:NF011412.0
COORDINATES: protein motif:HMM:NF012698.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001774971.1
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006109 - regulation of carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013225.2
COORDINATES: protein motif:HMM:TIGR03598.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: similar to AA sequence:RefSeq:WP_020808024.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00413.1
septal ring lytic transglycosylase RlpA family protein
COORDINATES: protein motif:HMM:NF021492.2
COORDINATES: protein motif:HMM:NF009709.0
COORDINATES: similar to AA sequence:RefSeq:WP_019292901.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: protein motif:HMM:NF002325.0
GO:0008483 - transaminase activity [Evidence IEA]
acetylornithine/succinylornithine family transaminase
COORDINATES: protein motif:HMM:NF016811.2
COORDINATES: protein motif:HMM:NF002634.0
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012911.2
COORDINATES: protein motif:HMM:NF037785.2
COORDINATES: protein motif:HMM:TIGR00457.1
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF006778.0
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00401.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: protein motif:HMM:NF023857.2
COORDINATES: protein motif:HMM:NF016268.2
COORDINATES: protein motif:HMM:TIGR00551.1
GO:0008734 - L-aspartate oxidase activity [Evidence IEA]
GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006879.0
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008987 - quinolinate synthetase A activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00078.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
carboxylating nicotinate-nucleotide diphosphorylase
COORDINATES: protein motif:HMM:NF013292.2
prolyl oligopeptidase family serine peptidase
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0016052 - carbohydrate catabolic process [Evidence IEA]
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015557.2
COORDINATES: protein motif:HMM:NF033644.1
UpxY family transcription antiterminator
COORDINATES: protein motif:HMM:NF027475.2
COORDINATES: protein motif:HMM:NF027540.2
COORDINATES: protein motif:HMM:NF027232.2
COORDINATES: protein motif:HMM:NF014826.2
COORDINATES: protein motif:HMM:TIGR03026.1
UDP-glucose/GDP-mannose dehydrogenase family protein
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: protein motif:HMM:NF039343.1
COORDINATES: protein motif:HMM:NF015510.2
outer membrane lipoprotein carrier protein LolA
COORDINATES: protein motif:HMM:NF013727.2
COORDINATES: protein motif:HMM:NF015962.2
COORDINATES: protein motif:HMM:NF001567.0
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: protein motif:HMM:NF014690.2
GO:0043772 - acyl-phosphate glycerol-3-phosphate acyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001503.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00362.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
chromosomal replication initiator protein DnaA
COORDINATES: protein motif:HMM:TIGR00587.1
COORDINATES: protein motif:HMM:NF013430.2
COORDINATES: similar to AA sequence:RefSeq:WP_009567342.1
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA]
polyribonucleotide nucleotidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011275926.1
COORDINATES: protein motif:HMM:NF004160.0
GO:0003919 - FMN adenylyltransferase activity [Evidence IEA]
bifunctional riboflavin kinase/FAD synthetase
COORDINATES: protein motif:HMM:TIGR00431.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014130.2
GO:0019843 - rRNA binding [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF016351.2
COORDINATES: protein motif:HMM:TIGR00487.1
COORDINATES: protein motif:HMM:TIGR01953.1
COORDINATES: protein motif:HMM:NF014617.2
COORDINATES: protein motif:HMM:NF015251.2
COORDINATES: protein motif:HMM:NF014713.2
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:NF013698.2
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: protein motif:HMM:TIGR00196.1
bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase
COORDINATES: protein motif:HMM:NF017534.2
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF020967.2
COORDINATES: protein motif:HMM:NF013335.2
COORDINATES: similar to AA sequence:RefSeq:WP_013804409.1
COORDINATES: protein motif:HMM:NF018178.2
COORDINATES: similar to AA sequence:RefSeq:WP_006928042.1
carbohydrate binding family 9 domain-containing protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: protein motif:HMM:NF016056.2
COORDINATES: protein motif:HMM:TIGR01460.1
COORDINATES: protein motif:HMM:NF001899.0
GO:0004373 - glycogen (starch) synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004953.0
COORDINATES: protein motif:HMM:TIGR00017.1
GO:0004127 - cytidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00093.1
COORDINATES: protein motif:HMM:TIGR00281.1
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014654.2
COORDINATES: protein motif:HMM:TIGR00233.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025637.2
COORDINATES: protein motif:HMM:NF006886.1
COORDINATES: protein motif:HMM:NF015629.2
COORDINATES: protein motif:HMM:NF018649.2
COORDINATES: protein motif:HMM:TIGR00557.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: protein motif:HMM:TIGR02395.1
GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025615.2
COORDINATES: protein motif:HMM:NF013132.2
COORDINATES: protein motif:HMM:NF012263.2
cytochrome bc complex cytochrome b subunit
ubiquinol-cytochrome c reductase iron-sulfur subunit
COORDINATES: protein motif:HMM:NF026048.2
COORDINATES: protein motif:HMM:NF015861.2
COORDINATES: protein motif:HMM:NF012267.2
COORDINATES: protein motif:HMM:NF024765.2
COORDINATES: protein motif:HMM:NF023273.2
COORDINATES: protein motif:HMM:NF002231.0
N-acetylmannosamine-6-phosphate 2-epimerase
COORDINATES: protein motif:HMM:NF028476.2
COORDINATES: protein motif:HMM:NF014877.2
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
COORDINATES: protein motif:HMM:NF038128.1
choice-of-anchor J domain-containing protein
COORDINATES: protein motif:HMM:TIGR01420.1
type IV pilus twitching motility protein PilT
COORDINATES: protein motif:HMM:NF012485.2
secretin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016253.2
GO:0043683 - type IV pilus assembly [Evidence IEA]; GO:0043107 - type IV pilus-dependent motility [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02532.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:NF019575.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF013632.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF013461.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: protein motif:HMM:NF015000.2
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
LysM peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR02199.1
D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase
COORDINATES: protein motif:HMM:TIGR02198.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
D-glycero-beta-D-manno-heptose-7-phosphate kinase
COORDINATES: protein motif:HMM:TIGR00066.1
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024855.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
COORDINATES: protein motif:HMM:NF014630.2
C4-type zinc ribbon domain-containing protein
COORDINATES: protein motif:HMM:TIGR00054.1
COORDINATES: protein motif:HMM:NF015084.2
COORDINATES: protein motif:HMM:NF003657.0
GO:0008780 - acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity [Evidence IEA]
acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase
COORDINATES: protein motif:HMM:NF009667.0
GO:0016836 - hydro-lyase activity [Evidence IEA]; GO:0008759 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO:0009245 - lipid A biosynthetic process [Evidence IEA]
bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase
COORDINATES: protein motif:HMM:NF002060.0
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0009245 - lipid A biosynthetic process [Evidence IEA]
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
COORDINATES: protein motif:HMM:NF015871.2
COORDINATES: protein motif:HMM:TIGR03303.1
outer membrane protein assembly factor BamA
COORDINATES: protein motif:HMM:NF002074.0
GO:0070006 - metalloaminopeptidase activity [Evidence IEA]
GO:0019538 - protein metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001159.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03319.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022135.2
COORDINATES: protein motif:HMM:NF004905.0
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0032778 - P-type cobalt transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01584.1
GO:0009346 - ATP-independent citrate lyase complex [Evidence IEA]
GO:0008815 - citrate (pro-3S)-lyase activity [Evidence IEA]; GO:0008814 - citrate CoA-transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015297.2
COORDINATES: protein motif:HMM:NF001614.1
aconitase/3-isopropylmalate dehydratase large subunit family protein
COORDINATES: protein motif:HMM:NF012407.2
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
isocitrate/isopropylmalate family dehydrogenase
COORDINATES: protein motif:HMM:NF022932.2
COORDINATES: protein motif:HMM:NF016156.2
COORDINATES: similar to AA sequence:RefSeq:WP_010645784.1
COORDINATES: similar to AA sequence:RefSeq:WP_004627468.1
COORDINATES: protein motif:HMM:NF017239.2
COORDINATES: similar to AA sequence:RefSeq:WP_006930864.1
COORDINATES: similar to AA sequence:RefSeq:WP_016291047.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_012726479.1
COORDINATES: protein motif:HMM:NF017016.2
COORDINATES: protein motif:HMM:NF017786.2
COORDINATES: protein motif:HMM:TIGR00472.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016279474.1
phenylalanine--tRNA ligase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_005786577.1
COORDINATES: similar to AA sequence:RefSeq:YP_500290.1
COORDINATES: protein motif:HMM:TIGR00168.2
COORDINATES: protein motif:HMM:TIGR00418.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025038.2
COORDINATES: protein motif:HMM:NF026253.2
COORDINATES: protein motif:HMM:NF013682.2
COORDINATES: protein motif:HMM:NF000818.0
GO:0042286 - glutamate-1-semialdehyde 2,1-aminomutase activity [Evidence IEA]
glutamate-1-semialdehyde 2,1-aminomutase
COORDINATES: protein motif:HMM:NF006762.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004655 - porphobilinogen synthase activity [Evidence IEA]
GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00562.1
GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00109.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00538.1
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: protein motif:HMM:TIGR01464.1
COORDINATES: protein motif:HMM:NF014641.2
COORDINATES: protein motif:HMM:TIGR00212.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01035.1
GO:0008883 - glutamyl-tRNA reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00460.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00739.1
COORDINATES: protein motif:HMM:TIGR00449.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015597.2
COORDINATES: protein motif:HMM:NF039482.1
GO:0003951 - NAD+ kinase activity [Evidence IEA]
GO:0006741 - NADP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01280.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00237.1
COORDINATES: protein motif:HMM:NF001824.0
GO:0009381 - excinuclease ABC activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013247.2
COORDINATES: protein motif:HMM:NF012640.2
anthranilate synthase component I family protein
COORDINATES: protein motif:HMM:TIGR02168.1
GO:0030261 - chromosome condensation [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: protein motif:HMM:NF015685.2
COORDINATES: protein motif:HMM:NF005932.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006929847.1
COORDINATES: protein motif:HMM:NF019334.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013595.2
COORDINATES: protein motif:HMM:NF013222.2
GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: protein motif:HMM:TIGR00252.1
GO:0009166 - nucleotide catabolic process [Evidence IEA]
5'-nucleotidase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014896.2
COORDINATES: protein motif:HMM:NF024371.2
COORDINATES: protein motif:HMM:NF014841.2
COORDINATES: protein motif:HMM:TIGR00089.1
tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
COORDINATES: protein motif:HMM:NF019159.2
MBL fold metallo-hydrolase RNA specificity domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003498915.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006930993.1
COORDINATES: similar to AA sequence:RefSeq:WP_005877559.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF005557.0
COORDINATES: protein motif:HMM:NF014041.2
COORDINATES: protein motif:HMM:TIGR03998.1
bacillithiol biosynthesis cysteine-adding enzyme BshC
COORDINATES: protein motif:HMM:NF025217.2
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:NF016400.2
rhomboid family intramembrane serine protease
COORDINATES: similar to AA sequence:RefSeq:WP_001040954.1
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
two-component regulator propeller domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006928254.1
COORDINATES: similar to AA sequence:RefSeq:WP_006928253.1
COORDINATES: protein motif:HMM:NF013955.2
COORDINATES: protein motif:HMM:TIGR00507.1
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01356.1
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:NF015957.2
COORDINATES: protein motif:HMM:NF001263.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00691.1
bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_002506230.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00758.1
COORDINATES: protein motif:HMM:NF016051.2
phosphopantothenoylcysteine decarboxylase
COORDINATES: protein motif:HMM:NF012832.2
GO:0004385 - guanylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00255.1
COORDINATES: protein motif:HMM:NF017633.2
NFACT RNA binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR01163.1
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015734.2
COORDINATES: similar to AA sequence:RefSeq:WP_002324241.1
COORDINATES: protein motif:HMM:NF005298.0
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024915.2
COORDINATES: protein motif:HMM:TIGR00247.1
GO:0008932 - lytic endotransglycosylase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013939.2
COORDINATES: protein motif:HMM:TIGR00966.2
GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01129.1
COORDINATES: protein motif:HMM:NF012509.2
COORDINATES: protein motif:HMM:NF027814.2
COORDINATES: protein motif:HMM:NF019556.2
COORDINATES: protein motif:HMM:NF015177.2
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01573.1
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00287.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01899.1
type III-A CRISPR-associated RAMP protein Csm5
COORDINATES: protein motif:HMM:TIGR01903.1
type III-A CRISPR-associated RAMP protein Csm4
COORDINATES: protein motif:HMM:TIGR02582.1
type III-A CRISPR-associated RAMP protein Csm3
COORDINATES: protein motif:HMM:NF015695.2
type III-A CRISPR-associated protein Csm2
COORDINATES: protein motif:HMM:TIGR02578.1
type III-A CRISPR-associated protein Cas10/Csm1
COORDINATES: protein motif:HMM:TIGR00482.1
nicotinate-nucleotide adenylyltransferase
COORDINATES: protein motif:HMM:TIGR03302.1
GO:0065003 - protein-containing complex assembly [Evidence IEA]
outer membrane protein assembly factor BamD
COORDINATES: protein motif:HMM:NF014234.2
GO:0008977 - prephenate dehydrogenase (NAD+) activity [Evidence IEA]; GO:0004665 - prephenate dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006571 - tyrosine biosynthetic process [Evidence IEA]
prephenate dehydrogenase/arogenate dehydrogenase family protein
COORDINATES: protein motif:HMM:NF006421.0
COORDINATES: protein motif:HMM:NF015607.2
COORDINATES: protein motif:HMM:NF012442.2
COORDINATES: protein motif:HMM:TIGR01070.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0030983 - mismatched DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF009855.0
COORDINATES: protein motif:HMM:TIGR00121.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04191.1
COORDINATES: protein motif:HMM:TIGR00104.1
tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: protein motif:HMM:NF025925.2
COORDINATES: protein motif:HMM:NF013250.2
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: protein motif:HMM:NF015506.2
COORDINATES: protein motif:HMM:NF014019.2
COORDINATES: similar to AA sequence:RefSeq:WP_011001079.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016839.2
septum formation initiator family protein
COORDINATES: protein motif:HMM:TIGR01236.1
GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]
GO:0006562 - proline catabolic process [Evidence IEA]
L-glutamate gamma-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF040057.1
COORDINATES: protein motif:HMM:NF024572.2
COORDINATES: protein motif:HMM:NF039970.1
COORDINATES: protein motif:HMM:TIGR03594.1
COORDINATES: protein motif:HMM:NF016354.2
thioredoxin-like domain-containing protein
COORDINATES: protein motif:HMM:NF013528.2
bifunctional oligoribonuclease/PAP phosphatase NrnA
COORDINATES: protein motif:HMM:NF014305.2
COORDINATES: protein motif:HMM:TIGR00038.1
COORDINATES: protein motif:HMM:NF012913.2
COORDINATES: protein motif:HMM:TIGR04001.1
GO:0019213 - deacetylase activity [Evidence IEA]
bacillithiol biosynthesis deacetylase BshB1
GO:0015379 - potassium:chloride symporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039201.1
COORDINATES: protein motif:HMM:NF012366.2
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: protein motif:HMM:NF017482.2
COORDINATES: similar to AA sequence:RefSeq:WP_006927290.1
COORDINATES: protein motif:HMM:TIGR00052.1
COORDINATES: protein motif:HMM:NF013714.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006873.0
GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO:0018339 - peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid [Evidence IEA]
30S ribosomal protein S12 methylthiotransferase RimO
COORDINATES: protein motif:HMM:TIGR00064.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: similar to AA sequence:RefSeq:WP_002508740.1
COORDINATES: protein motif:HMM:NF013231.2
COORDINATES: protein motif:HMM:NF004198.0
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: protein motif:HMM:NF006829.0
COORDINATES: protein motif:HMM:TIGR01923.1
GO:0008756 - o-succinylbenzoate-CoA ligase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015365078.1
GO:0004298 - threonine-type endopeptidase activity [Evidence IEA]
GO:0051603 - proteolysis involved in protein catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016448039.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
ATP-dependent protease ATPase subunit HslU
COORDINATES: protein motif:HMM:NF017026.2
COORDINATES: protein motif:HMM:NF020086.2
COORDINATES: protein motif:HMM:TIGR03904.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF023583.2
type I restriction-modification system subunit M N-terminal domain-containing protein
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF015210.2
GO:0006304 - DNA modification [Evidence IEA]
four helix bundle suffix domain-containing protein
COORDINATES: protein motif:HMM:NF037510.2
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF015535.2
COORDINATES: protein motif:HMM:NF001986.0
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014587.2
COORDINATES: protein motif:HMM:NF001785.0
GO:0008276 - protein methyltransferase activity [Evidence IEA]
GO:0006479 - protein methylation [Evidence IEA]
50S ribosomal protein L11 methyltransferase
COORDINATES: protein motif:HMM:TIGR04189.1
COORDINATES: protein motif:HMM:NF014046.2
COORDINATES: protein motif:HMM:NF001886.0
COORDINATES: protein motif:HMM:NF001753.0
COORDINATES: protein motif:HMM:NF013180.2
COORDINATES: protein motif:HMM:NF018513.2
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: protein motif:HMM:NF023580.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
helicase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF006871.0
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014627.2
COORDINATES: protein motif:HMM:NF024883.2
COORDINATES: protein motif:HMM:NF013422.2
COORDINATES: protein motif:HMM:NF013832.2
COORDINATES: protein motif:HMM:TIGR00963.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01951.1
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_016293396.1
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002389231.1
COORDINATES: protein motif:HMM:NF013630.2
COORDINATES: similar to AA sequence:RefSeq:WP_002307075.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF009980.0
COORDINATES: similar to AA sequence:RefSeq:WP_020045332.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01146.1
COORDINATES: protein motif:HMM:TIGR00962.1
COORDINATES: protein motif:HMM:NF004402.0
COORDINATES: protein motif:HMM:TIGR01144.1
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
COORDINATES: protein motif:HMM:NF012365.2
COORDINATES: protein motif:HMM:TIGR01131.1
COORDINATES: protein motif:HMM:NF021073.2
COORDINATES: protein motif:HMM:NF016408.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_016293132.1
COORDINATES: protein motif:HMM:NF033484.1
GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]
GO:0006470 - protein dephosphorylation [Evidence IEA]
Stp1/IreP family PP2C-type Ser/Thr phosphatase
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: protein motif:HMM:NF028007.2
dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF025010.2
COORDINATES: protein motif:HMM:NF027964.2
saccharopine dehydrogenase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR01893.1
COORDINATES: protein motif:HMM:NF033539.1
COORDINATES: protein motif:HMM:TIGR02100.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020459.2
COORDINATES: protein motif:HMM:TIGR00046.1
histidine triad nucleotide-binding protein
COORDINATES: protein motif:HMM:NF014173.2
COORDINATES: protein motif:HMM:NF014386.2
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: protein motif:HMM:TIGR02857.1
GO:0055051 - ATP-binding cassette (ABC) transporter complex, integrated substrate binding [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0033230 - ABC-type cysteine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0033228 - cysteine export across plasma membrane [Evidence IEA]
thiol reductant ABC exporter subunit CydD
COORDINATES: protein motif:HMM:TIGR02868.1
thiol reductant ABC exporter subunit CydC
COORDINATES: similar to AA sequence:RefSeq:WP_006926946.1
COORDINATES: protein motif:HMM:NF022007.2
COORDINATES: protein motif:HMM:NF016153.2
COORDINATES: protein motif:HMM:NF014667.2
COORDINATES: protein motif:HMM:NF014665.2
GO:0006784 - heme A biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02229.1
cytochrome C oxidase subunit IV family protein
COORDINATES: protein motif:HMM:NF012720.2
cytochrome c oxidase subunit 3 family protein
COORDINATES: protein motif:HMM:TIGR02891.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02866.1
COORDINATES: protein motif:HMM:NF023249.2
COORDINATES: protein motif:HMM:NF015851.2
TAT-variant-translocated molybdopterin oxidoreductase
COORDINATES: protein motif:HMM:NF003349.0
GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]
GO:0048034 - heme O biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025330.2
COORDINATES: protein motif:HMM:TIGR00636.1
GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024585.2
COORDINATES: protein motif:HMM:NF005507.0
3-methyl-2-oxobutanoate dehydrogenase subunit VorB
COORDINATES: protein motif:HMM:NF013707.2
GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]
2-oxoacid:acceptor oxidoreductase family protein
COORDINATES: protein motif:HMM:NF016160.2
SoxR reducing system RseC family protein
RnfABCDGE type electron transport complex subunit B
COORDINATES: protein motif:HMM:TIGR01945.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015100.2
RnfABCDGE type electron transport complex subunit D
COORDINATES: protein motif:HMM:TIGR01947.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
RnfABCDGE type electron transport complex subunit G
COORDINATES: protein motif:HMM:TIGR01948.1
COORDINATES: protein motif:HMM:NF003481.0
COORDINATES: protein motif:HMM:NF024110.2
COORDINATES: similar to AA sequence:RefSeq:WP_006930458.1
COORDINATES: protein motif:HMM:TIGR01206.1
GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]
COORDINATES: protein motif:HMM:NF012885.2
COORDINATES: protein motif:HMM:TIGR02144.1
COORDINATES: protein motif:HMM:TIGR00707.1
aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:NF033543.1
COORDINATES: protein motif:HMM:NF000796.0
dihydroorotate dehydrogenase electron transfer subunit
COORDINATES: protein motif:HMM:NF013355.2
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014055.2
aspartate carbamoyltransferase regulatory subunit
COORDINATES: protein motif:HMM:TIGR00670.1
GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012441.2
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00336.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01134.1
GO:0004044 - amidophosphoribosyltransferase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00639.1
GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IEA]
phosphoribosylglycinamide formyltransferase
COORDINATES: protein motif:HMM:TIGR00877.1
GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006764.0
GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA]
GO:0006188 - IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF010568.0
GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
phosphoribosylaminoimidazolesuccinocarboxamide synthase
COORDINATES: similar to AA sequence:RefSeq:WP_006929439.1
COORDINATES: protein motif:HMM:NF002049.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003937 - IMP cyclohydrolase activity [Evidence IEA]; GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
COORDINATES: protein motif:HMM:NF024897.2
phosphoribosylformylglycinamidine synthase subunit PurQ
COORDINATES: protein motif:HMM:NF012345.2
COORDINATES: protein motif:HMM:NF014788.2
COORDINATES: protein motif:HMM:TIGR00878.1
GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence IEA]
phosphoribosylformylglycinamidine cyclo-ligase
COORDINATES: protein motif:HMM:NF002223.0
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF005493.0
GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016089.2
COORDINATES: protein motif:HMM:NF021364.2
putative DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF003818.1
COORDINATES: similar to AA sequence:RefSeq:WP_006926835.1
COORDINATES: protein motif:HMM:NF038123.1
COORDINATES: protein motif:HMM:NF009920.0
GO:0045148 - tripeptide aminopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017922.2
COORDINATES: protein motif:HMM:TIGR00977.1
GO:0043714 - (R)-citramalate synthase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02087.1
COORDINATES: protein motif:HMM:TIGR02086.1
3-isopropylmalate dehydratase large subunit
COORDINATES: protein motif:HMM:NF002086.0
GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00169.1
GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004017.0
COORDINATES: protein motif:HMM:NF008864.0
GO:1990610 - acetolactate synthase regulator activity [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00118.1
GO:0005948 - acetolactate synthase complex [Evidence IEA]
GO:0003984 - acetolactate synthase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
biosynthetic-type acetolactate synthase large subunit
COORDINATES: protein motif:HMM:NF002068.0
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03990.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000667286.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013540.2
outer membrane beta-barrel family protein
COORDINATES: protein motif:HMM:NF028488.2
COORDINATES: protein motif:HMM:NF012402.2
COORDINATES: protein motif:HMM:NF013962.2
choice-of-anchor D domain-containing protein
COORDINATES: protein motif:HMM:TIGR02197.1
GO:0008712 - ADP-glyceromanno-heptose 6-epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002010.0
GO:0035438 - cyclic-di-GMP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012308.2
COORDINATES: protein motif:HMM:NF004976.0
GO:0004412 - homoserine dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006930031.1
COORDINATES: similar to AA sequence:RefSeq:WP_006929685.1
TraR/DksA family transcriptional regulator
COORDINATES: protein motif:HMM:NF012945.2
COORDINATES: similar to AA sequence:RefSeq:WP_016290567.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
3-phosphoserine/phosphohydroxythreonine transaminase
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
COORDINATES: protein motif:HMM:NF004046.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00103.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: protein motif:HMM:TIGR00615.1
COORDINATES: protein motif:HMM:NF014618.2
COORDINATES: similar to AA sequence:RefSeq:WP_013821630.1
COORDINATES: protein motif:HMM:NF001244.0
GO:0052624 - 2-phytyl-1,4-naphthoquinone methyltransferase activity [Evidence IEA]
GO:0042372 - phylloquinone biosynthetic process [Evidence IEA]
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE
COORDINATES: protein motif:HMM:TIGR00421.1
COORDINATES: protein motif:HMM:TIGR01475.1
GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence IEA]
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03699.1
cyclic dehypoxanthinyl futalosine synthase
COORDINATES: protein motif:HMM:TIGR03700.1
COORDINATES: protein motif:HMM:TIGR00479.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
COORDINATES: protein motif:HMM:NF017936.2
COORDINATES: protein motif:HMM:NF014088.2
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009485198.1
COORDINATES: protein motif:HMM:NF009544.0
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016992 - lipoate synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009107 - lipoate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014037.2
COORDINATES: protein motif:HMM:NF013340.2
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: protein motif:HMM:NF002288.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004413 - homoserine kinase activity [Evidence IEA]
GO:0006566 - threonine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00260.1
GO:0004795 - threonine synthase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01241.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF011996.0
tRNA 5-hydroxyuridine modification protein YegQ
COORDINATES: protein motif:HMM:TIGR01885.1
GO:0004587 - ornithine-oxo-acid transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024743.2
COORDINATES: protein motif:HMM:NF022137.2
COORDINATES: protein motif:HMM:NF012705.2
squalene/phytoene synthase family protein
COORDINATES: protein motif:HMM:TIGR00446.1
RsmB/NOP family class I SAM-dependent RNA methyltransferase
COORDINATES: protein motif:HMM:TIGR01068.1
COORDINATES: protein motif:HMM:NF037144.2
COORDINATES: protein motif:HMM:NF037007.2
COORDINATES: protein motif:HMM:NF039709.1
COORDINATES: protein motif:HMM:TIGR01208.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019456581.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00234.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00494.1
GO:1903425 - fluoride transmembrane transporter activity [Evidence IEA]
GO:1903424 - fluoride transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014677.2
COORDINATES: similar to AA sequence:RefSeq:WP_012222082.1
COORDINATES: protein motif:HMM:NF025418.2
COORDINATES: protein motif:HMM:NF033590.1
COORDINATES: protein motif:HMM:NF015940.2
GO:0016755 - aminoacyltransferase activity [Evidence IEA]
GO:0044038 - cell wall macromolecule biosynthetic process [Evidence IEA]
peptidoglycan bridge formation glycyltransferase FemA/FemB family protein
COORDINATES: protein motif:HMM:TIGR00236.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: protein motif:HMM:NF013530.2
COORDINATES: protein motif:HMM:NF017345.2
dTDP-4-dehydrorhamnose 3,5-epimerase family protein
COORDINATES: protein motif:HMM:NF016908.2
polysaccharide biosynthesis C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006927155.1
FdtA/QdtA family cupin domain-containing protein
COORDINATES: protein motif:HMM:NF027249.2
type II toxin-antitoxin system HicA family toxin
COORDINATES: protein motif:HMM:NF016167.2
COORDINATES: protein motif:HMM:NF025953.2
COORDINATES: protein motif:HMM:NF025017.2
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: protein motif:HMM:NF015527.2
sulfotransferase family 2 domain-containing protein
COORDINATES: protein motif:HMM:TIGR02191.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004970.0
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005779510.1
COORDINATES: similar to AA sequence:RefSeq:WP_002442508.1
COORDINATES: protein motif:HMM:TIGR00128.1
GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00747.1
COORDINATES: protein motif:HMM:TIGR01031.1
COORDINATES: protein motif:HMM:NF014657.2
COORDINATES: similar to AA sequence:RefSeq:WP_016292440.1
COORDINATES: similar to AA sequence:RefSeq:WP_006926763.1
GO:0070403 - NAD+ binding [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018287377.1
COORDINATES: similar to AA sequence:RefSeq:WP_019902207.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
ADP-forming succinate--CoA ligase subunit beta
COORDINATES: protein motif:HMM:NF009007.0
COORDINATES: protein motif:HMM:NF014542.2
COORDINATES: protein motif:HMM:NF013592.2
aminoglycoside phosphotransferase family protein
COORDINATES: protein motif:HMM:NF014214.2
COORDINATES: protein motif:HMM:NF024770.2
COORDINATES: protein motif:HMM:NF025681.2
GxGYxYP family putative glycoside hydrolase
COORDINATES: protein motif:HMM:NF027541.2
COORDINATES: protein motif:HMM:TIGR01180.1
medium chain dehydrogenase/reductase family protein
COORDINATES: protein motif:HMM:NF014691.2
Fic/DOC family N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00737.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021486.2
COORDINATES: protein motif:HMM:NF012424.2
dihydrolipoamide acetyltransferase family protein
COORDINATES: protein motif:HMM:NF012880.2
dehydrogenase E1 component subunit alpha/beta
COORDINATES: protein motif:HMM:NF019533.2
COORDINATES: protein motif:HMM:NF019430.2
Spy/CpxP family protein refolding chaperone
formylglycine-generating enzyme family protein
COORDINATES: protein motif:HMM:TIGR01084.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF025086.2
COORDINATES: protein motif:HMM:NF016213.2
This anti-anti-sigma factor, or anti-sigma factor antagonist, belongs to a family that includes characterized members SpoIIAA, RsbV, RsfA, and RsfB; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014428.2
COORDINATES: protein motif:HMM:TIGR00580.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006926673.1
COORDINATES: protein motif:HMM:NF012027.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
type III restriction-modification system endonuclease
COORDINATES: protein motif:HMM:NF037081.2
COORDINATES: protein motif:HMM:TIGR02094.1
COORDINATES: similar to AA sequence:RefSeq:WP_006928229.1
COORDINATES: similar to AA sequence:RefSeq:WP_006928226.1
COORDINATES: protein motif:HMM:NF027224.2
COORDINATES: similar to AA sequence:RefSeq:WP_006927331.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927333.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927368.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927369.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006929259.1
COORDINATES: protein motif:HMM:TIGR00157.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: protein motif:HMM:NF004490.0
GO:0006206 - pyrimidine nucleobase metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021384.2
COORDINATES: protein motif:HMM:TIGR00276.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0052693 - epoxyqueuosine reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006928216.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927367.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927363.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927362.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927361.1
COORDINATES: protein motif:HMM:NF024422.2
COORDINATES: protein motif:HMM:TIGR01630.1
COORDINATES: protein motif:HMM:NF016732.2
COORDINATES: protein motif:HMM:NF025901.2
XkdF-like putative serine protease domain-containing protein
COORDINATES: protein motif:HMM:NF016754.2
COORDINATES: similar to AA sequence:RefSeq:WP_006927330.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927318.1
COORDINATES: protein motif:HMM:NF040129.1
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF015534.2
Type 1 glutamine amidotransferase-like domain-containing protein
COORDINATES: protein motif:HMM:TIGR00331.1
GO:0009408 - response to heat [Evidence IEA]
heat-inducible transcriptional repressor HrcA
COORDINATES: protein motif:HMM:NF010738.0
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008035.0
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00426.1
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:NF003995.0
COORDINATES: protein motif:HMM:NF005722.0
NADH-quinone oxidoreductase subunit NuoE
NADH-quinone oxidoreductase subunit NuoF
COORDINATES: protein motif:HMM:NF040763.1
NADH-dependent [FeFe] hydrogenase, group A6
COORDINATES: protein motif:HMM:TIGR00369.1
COORDINATES: protein motif:HMM:TIGR03956.1
[FeFe] hydrogenase H-cluster radical SAM maturase HydE
COORDINATES: protein motif:HMM:TIGR03955.1
[FeFe] hydrogenase H-cluster radical SAM maturase HydG
COORDINATES: similar to AA sequence:RefSeq:WP_008810228.1
[FeFe] hydrogenase H-cluster maturation GTPase HydF
COORDINATES: protein motif:HMM:NF021873.2
COORDINATES: protein motif:HMM:NF025088.2
COORDINATES: protein motif:HMM:NF024603.2
COORDINATES: protein motif:HMM:NF016228.2
COORDINATES: protein motif:HMM:NF015899.2
COORDINATES: protein motif:HMM:NF004344.0
acetyl-CoA carboxylase carboxyltransferase subunit alpha
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027451.2
COORDINATES: protein motif:HMM:NF022481.2
COORDINATES: protein motif:HMM:NF008168.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002436798.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006928084.1
GO:0003747 - translation release factor activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00159.1
GO:0004016 - adenylate cyclase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01496.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01203.1
GO:0006166 - purine ribonucleoside salvage [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF014645.2
GO:0009029 - tetraacyldisaccharide 4'-kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003805.0
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01357.1
GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013375.2
COORDINATES: protein motif:HMM:NF000594.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016169.2
COORDINATES: protein motif:HMM:NF016952.2
GO:0016603 - glutaminyl-peptide cyclotransferase activity [Evidence IEA]
GO:0017186 - peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002506138.1
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003166.0
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013705.2
COORDINATES: protein motif:HMM:NF012451.2
COORDINATES: protein motif:HMM:NF013232.2
COORDINATES: protein motif:HMM:NF033559.1
COORDINATES: protein motif:HMM:NF021758.2
COORDINATES: protein motif:HMM:TIGR00033.1
GO:0004107 - chorismate synthase activity [Evidence IEA]
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
isocitrate/isopropylmalate dehydrogenase family protein
COORDINATES: protein motif:HMM:NF014296.2
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
methylenetetrahydrofolate reductase [NAD(P)H]
COORDINATES: protein motif:HMM:NF013702.2
COORDINATES: protein motif:HMM:NF014582.2
COORDINATES: protein motif:HMM:TIGR00357.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: protein motif:HMM:TIGR01932.1
GO:0045861 - negative regulation of proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01933.1
COORDINATES: protein motif:HMM:NF013827.2
COORDINATES: similar to AA sequence:RefSeq:WP_001738005.1
COORDINATES: similar to AA sequence:RefSeq:WP_008814576.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004738 - pyruvate dehydrogenase activity [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring), homodimeric type
COORDINATES: protein motif:HMM:TIGR03641.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: protein motif:HMM:TIGR00372.1
COORDINATES: protein motif:HMM:TIGR01587.1
CRISPR-associated helicase/endonuclease Cas3
COORDINATES: protein motif:HMM:TIGR02592.1
type I-B CRISPR-associated protein Cas5b
COORDINATES: protein motif:HMM:NF016963.2
COORDINATES: protein motif:HMM:TIGR01877.1
COORDINATES: protein motif:HMM:TIGR01212.1
This family includes YhcC from E. coli K-12, an uncharacterized radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014052.2
COORDINATES: protein motif:HMM:NF009455.0
GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IEA]
GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]
carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
COORDINATES: protein motif:HMM:TIGR01368.1
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
COORDINATES: protein motif:HMM:TIGR02032.1
COORDINATES: protein motif:HMM:NF033707.0
COORDINATES: protein motif:HMM:NF002995.0
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00532.1
GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IEA]
GO:0016054 - organic acid catabolic process [Evidence IEA]
hydroxymethylglutaryl-CoA reductase, degradative
COORDINATES: protein motif:HMM:TIGR01240.1
GO:0004163 - diphosphomevalonate decarboxylase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]
COORDINATES: protein motif:HMM:NF011397.0
GO:0047429 - nucleoside triphosphate diphosphatase activity [Evidence IEA]
GO:0009143 - nucleoside triphosphate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004863.0
COORDINATES: protein motif:HMM:NF001911.0
COORDINATES: similar to AA sequence:RefSeq:WP_006927956.1
COORDINATES: protein motif:HMM:TIGR01905.1
COORDINATES: protein motif:HMM:NF021235.2
COORDINATES: similar to AA sequence:RefSeq:WP_006927961.1
COORDINATES: protein motif:HMM:TIGR01525.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00326.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]; GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
COORDINATES: protein motif:HMM:TIGR00187.1
COORDINATES: protein motif:HMM:NF006803.0
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]; GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
COORDINATES: protein motif:HMM:NF000812.0
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019135.2
COORDINATES: protein motif:HMM:TIGR00634.1
COORDINATES: protein motif:HMM:NF015566.2
COORDINATES: protein motif:HMM:NF015570.2
PTS system mannose/fructose/sorbose family transporter subunit IID
COORDINATES: similar to AA sequence:RefSeq:WP_003422895.1
COORDINATES: protein motif:HMM:TIGR01417.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: protein motif:HMM:NF006426.0
bifunctional phosphoglucose/phosphomannose isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_017370549.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016292883.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013494678.1
COORDINATES: similar to AA sequence:RefSeq:WP_019183509.1
COORDINATES: protein motif:HMM:NF015905.2
COORDINATES: protein motif:HMM:TIGR00186.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: protein motif:HMM:NF020249.2
bifunctional response regulator/alkaline phosphatase family protein
GO:0004412 - homoserine dehydrogenase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF007967.0
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF007113.1
nucleoside triphosphate pyrophosphohydrolase
COORDINATES: protein motif:HMM:NF014871.2
bifunctional UDP-sugar hydrolase/5'-nucleotidase
COORDINATES: protein motif:HMM:NF024245.2
COORDINATES: protein motif:HMM:NF013499.2
OB-fold nucleic acid binding domain-containing protein
COORDINATES: protein motif:HMM:NF040146.1
COORDINATES: protein motif:HMM:NF003555.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021788.2
COORDINATES: protein motif:HMM:TIGR00215.1
GO:0008915 - lipid-A-disaccharide synthase activity [Evidence IEA]
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00560.1
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: protein motif:HMM:NF016489.2
COORDINATES: protein motif:HMM:TIGR00200.1
COORDINATES: protein motif:HMM:TIGR02258.1
GO:0008664 - 2'-5'-RNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02012.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:NF014668.2
GO:0006282 - regulation of DNA repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF022596.2
COORDINATES: protein motif:HMM:TIGR00344.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01179.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017072.2
bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase family protein
COORDINATES: protein motif:HMM:NF010587.0
COORDINATES: protein motif:HMM:TIGR00096.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0000451 - rRNA 2'-O-methylation [Evidence IEA]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:NF019606.2
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025112.2
COORDINATES: protein motif:HMM:NF015147.2
COORDINATES: protein motif:HMM:NF015047.2
COORDINATES: protein motif:HMM:NF016764.2
COORDINATES: similar to AA sequence:RefSeq:WP_017953234.1
COORDINATES: protein motif:HMM:TIGR01378.1
GO:0004788 - thiamine diphosphokinase activity [Evidence IEA]
GO:0006772 - thiamine metabolic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_004912347.1
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013531.2
COORDINATES: protein motif:HMM:NF009057.0
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]; GO:0006568 - tryptophan metabolic process [Evidence IEA]
TrpB-like pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:TIGR00181.1
COORDINATES: protein motif:HMM:NF012862.2
COORDINATES: protein motif:HMM:NF023043.2
COORDINATES: protein motif:HMM:NF039587.1
COORDINATES: protein motif:HMM:NF012783.2
COORDINATES: protein motif:HMM:NF028121.2
TRAP transporter TatT component family protein
COORDINATES: protein motif:HMM:NF015445.2
TRAP transporter substrate-binding protein DctP
COORDINATES: protein motif:HMM:TIGR00486.1
GO:0051540 - metal cluster binding [Evidence IEA]
Nif3-like dinuclear metal center hexameric protein
COORDINATES: protein motif:HMM:TIGR00586.1
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01251.1
COORDINATES: protein motif:HMM:NF012673.2
GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039629.1
COORDINATES: protein motif:HMM:NF037667.2
GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024869.2
COORDINATES: protein motif:HMM:NF013923.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: protein motif:HMM:NF001808.0
GO:0016684 - oxidoreductase activity, acting on peroxide as acceptor [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004498.0
COORDINATES: similar to AA sequence:RefSeq:WP_004881318.1
COORDINATES: protein motif:HMM:NF005162.0
COORDINATES: similar to AA sequence:RefSeq:WP_017402052.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoI
COORDINATES: similar to AA sequence:RefSeq:WP_005151242.1
COORDINATES: protein motif:HMM:TIGR01973.1
GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]
GO:0006120 - mitochondrial electron transport, NADH to ubiquinone [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoG
COORDINATES: protein motif:HMM:TIGR01959.1
COORDINATES: protein motif:HMM:NF008728.0
GO:0030964 - NADH dehydrogenase complex [Evidence IEA]
GO:0051287 - NAD binding [Evidence IEA]; GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00257.1
MlaE family lipid ABC transporter permease subunit
COORDINATES: protein motif:HMM:NF015823.2
ABC-type transport auxiliary lipoprotein family protein
COORDINATES: protein motif:HMM:TIGR02046.1
succinate dehydrogenase cytochrome b subunit
COORDINATES: protein motif:HMM:NF005749.0
fumarate reductase/succinate dehydrogenase flavoprotein subunit
COORDINATES: protein motif:HMM:NF005746.0
succinate dehydrogenase/fumarate reductase iron-sulfur subunit
RHS repeat-associated core domain-containing protein
COORDINATES: protein motif:HMM:TIGR03696.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927552.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927711.1
COORDINATES: similar to AA sequence:RefSeq:WP_006927712.1
COORDINATES: protein motif:HMM:NF033679.1
COORDINATES: protein motif:HMM:NF028004.2
COORDINATES: protein motif:HMM:NF040196.1
COORDINATES: protein motif:HMM:NF016176.2
COORDINATES: protein motif:HMM:NF019262.2
COORDINATES: protein motif:HMM:NF037959.1
COORDINATES: similar to AA sequence:RefSeq:WP_012077405.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: protein motif:HMM:NF014643.2
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: protein motif:HMM:TIGR02385.1
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
GO:0005384 - manganese ion transmembrane transporter activity [Evidence IEA]
GO:0030026 - cellular manganese ion homeostasis [Evidence IEA]
COORDINATES: protein motif:HMM:NF019351.2
multicopper oxidase domain-containing protein
COORDINATES: protein motif:HMM:NF019352.2
COORDINATES: protein motif:HMM:NF015581.2
COORDINATES: protein motif:HMM:NF021505.2
COORDINATES: similar to AA sequence:RefSeq:WP_006930327.1
COORDINATES: protein motif:HMM:NF012593.2
dicarboxylate/amino acid:cation symporter
COORDINATES: protein motif:HMM:NF019468.2
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF007388.0
GO:0047834 - D-threo-aldose 1-dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020341.2
COORDINATES: protein motif:HMM:NF024578.2
COORDINATES: protein motif:HMM:TIGR00106.1
COORDINATES: protein motif:HMM:NF016311.2
glycosyltransferase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013257.2
COORDINATES: protein motif:HMM:TIGR00945.1
COORDINATES: protein motif:HMM:NF000586.1
COORDINATES: similar to AA sequence:RefSeq:WP_012951241.1
COORDINATES: protein motif:HMM:TIGR01662.1
COORDINATES: protein motif:HMM:NF003915.0
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: protein motif:HMM:NF014575.2
GO:0046118 - 7-methylguanosine biosynthetic process [Evidence IEA]; GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
COORDINATES: protein motif:HMM:TIGR00136.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]; GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
COORDINATES: protein motif:HMM:NF003661.0
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: protein motif:HMM:TIGR03593.1
GO:0051205 - protein insertion into membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002452125.1
membrane protein insertion efficiency factor YidD
COORDINATES: protein motif:HMM:NF013022.2
GO:0004526 - ribonuclease P activity [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002558970.1