Desulfovibrio desulfuricans strain L4 plasmid pDsulf-L4, complete sequence.
Bacteria; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.
Microbial sulfate reduction is an important source of hydrogen sulfide from a large swine finishing facility
Submitted (13-JAN-2021) Department of Molecular Biology of Microorganisms, Institute of Bioengineering, Research Center of Biotechnology of Ras, Prosp. 60-Let Oktyabrya, Bld 7-1, Moscow 117312, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP072609.1.\nBacteria and source DNA available from Dr. Olga V. Karnachuk.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: Flye v. 2.7b\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 302.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/30/2023 04:25:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,029\nCDSs (total) :: 2,959\nGenes (coding) :: 2,941\nCDSs (with protein) :: 2,941\nGenes (RNA) :: 70\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 4 of 18\nPseudo Genes (incomplete) :: 15 of 18\nPseudo Genes (internal stop) :: 2 of 18\nPseudo Genes (multiple problems) :: 2 of 18\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000240539.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
sulfonamide-resistant dihydropteroate synthase Sul2
COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
aminoglycoside O-phosphotransferase APH(3'')-Ib
COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
aminoglycoside O-phosphotransferase APH(6)-Id
COORDINATES: similar to AA sequence:RefSeq:WP_000844627.1
COORDINATES: similar to AA sequence:RefSeq:WP_000164043.1
tetracycline resistance transcriptional repressor TetR(A)
COORDINATES: similar to AA sequence:RefSeq:WP_000804063.1
tetracycline efflux MFS transporter Tet(A)
COORDINATES: similar to AA sequence:RefSeq:WP_001120888.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000238497.1
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: protein motif:HMM:NF036929.2
COORDINATES: protein motif:HMM:NF028103.2
DNA-primase RepB domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007857788.1