Desulfovibrio desulfuricans strain L4 plasmid pDsulf-L4, complete sequence.
type: Entry
definition: Desulfovibrio desulfuricans strain L4 plasmid pDsulf-L4, complete sequence.
sequence version: NZ_CP072609.1
sequence date: 2023-04-30
sequence: sequence
division: CON
label: NZ_CP072609.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN17304468
keyword: RefSeq
source: Desulfovibrio desulfuricans
organism: Desulfovibrio desulfuricans
taxonomy: Bacteria; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP072609.1.\nBacteria and source DNA available from Dr. Olga V. Karnachuk.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: Flye v. 2.7b\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 302.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/30/2023 04:25:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,029\nCDSs (total) :: 2,959\nGenes (coding) :: 2,941\nCDSs (with protein) :: 2,941\nGenes (RNA) :: 70\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 4 of 18\nPseudo Genes (incomplete) :: 15 of 18\nPseudo Genes (internal stop) :: 2 of 18\nPseudo Genes (multiple problems) :: 2 of 18\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 10867
topology: circular
so has quality: SO_0000988
location: 1..10867
location: region:1-10867:1
RO_0002162: 876

NZ_CP072609
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN17304468
type: BioSample
SIO_000068: biosample

1
title: Microbial sulfate reduction is an important source of hydrogen sulfide from a large swine finishing facility
author: Karnachuk, O.V.
author: Rusanov, I.
author: Panova, I.A.
author: Zyusman, V.S.
author: Grigoriev, M.A.
author: Kadyrbaev, M.
author: Pimenov, N.V.
author: Gruzdev, E.V.
author: Beletsky, A.V.
author: Mardanov, A.V.
author: Ravin, N.V.
journal: Unpublished

2
title: Direct Submission
author: Karnachuk, O.V.
author: Rusanov, I.
author: Panova, I.A.
author: Zyusman, V.S.
author: Grigoriev, M.A.
author: Kadyrbaev, M.
author: Pimenov, N.V.
author: Gruzdev, E.V.
author: Beletsky, A.V.
author: Mardanov, A.V.
author: Ravin, N.V.
journal: Submitted (13-JAN-2021) Department of Molecular Biology of Microorganisms, Institute of Bioengineering, Research Center of Biotechnology of Ras, Prosp. 60-Let Oktyabrya, Bld 7-1, Moscow 117312, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10867:1
position: 10867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10867:1:source
so part of: sequence
organism: Desulfovibrio desulfuricans
mol type: genomic DNA
strain: L4
plasmid: pDsulf-L4
collection date: 2020

876
type: Taxonomy
SIO_000068: taxonomy

J8J02_RS15060
type: Gene
subclass of: SO_0000704
RO_0002162: 876
locus tag: J8J02_RS15060
old locus tag: J8J02_15060
so part of: sequence
location: join(10536..10867,1..508)
location: region:1-10867:1
so has part: feature:10536-10867:1:exon
so has part: feature:1-508:1:exon
subclass of: SO_0000010

72384065
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:10536-10867:1:exon

position:10536:1
position: 10536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-508:1:exon

position:508:1
position: 508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

J8J02_RS15060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
locus tag: J8J02_RS15060
old locus tag: J8J02_15060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helicase RepA family protein
translation: MATHKPINILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADRWFRRHDGGVLKPAVLERQRKSKGVPRGEA
SIO_010081: J8J02_RS15060
subclass of: SO_0000673
so part of: J8J02_RS15060
location: join(10536..10867,1..508)
location: region:1-10867:1
so has part: feature:10536-10867:1:exon
so has part: feature:1-508:1:exon

WP_000190708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10536-10867:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-508:1:exon

J8J02_RS15065
type: Gene
subclass of: SO_0000704
RO_0002162: 876
gene: repC
locus tag: J8J02_RS15065
old locus tag: J8J02_15065
so part of: sequence
location: 495..1346
location: region:495-1346:1
so has part: feature:495-1346:1:exon
subclass of: SO_0000010

72384066
type: Gene
SIO_000068: ncbigene

position:495:1
position: 495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1346:1
position: 1346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:495-1346:1:exon

J8J02_RS15065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
gene: repC
locus tag: J8J02_RS15065
old locus tag: J8J02_15065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000240539.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein C, IncQ-type
translation: MVKPKNKHSLSHVRHDPAHCLAPGLFRALKRGERKRSKLDVTYDYGDGKRIEFSGPEPLGADDLRILQGLVAMAGPNGLVLGPEPKTEGGRQLRLFLEPKWEAVTADAMVVKGSYRALAKEIGAEVDSGGALKHIQDCIERLWKVSIIAQNGRKRQGFRLLSEYASDEADGRLYVALNPLIAQAVMGGGQHVRISMDEVRALDSETARLLHQRLCGWIDPGKTGKASIDTLCGYVWPSEASGSTMRKRRQRVREALPELVALGWTVTEFAAGKYDITRPKAAG
SIO_010081: J8J02_RS15065
subclass of: SO_0000673
so part of: J8J02_RS15065
location: 495..1346
location: region:495-1346:1
so has part: feature:495-1346:1:exon

WP_000240536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:495-1346:1:exon

J8J02_RS15070
type: Gene
subclass of: SO_0000704
RO_0002162: 876
gene: sul2
locus tag: J8J02_RS15070
old locus tag: J8J02_15070
so part of: sequence
location: 1654..2469
location: region:1654-2469:1
so has part: feature:1654-2469:1:exon
subclass of: SO_0000010

72384067
type: Gene
SIO_000068: ncbigene

position:1654:1
position: 1654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2469:1
position: 2469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1654-2469:1:exon

J8J02_RS15070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
gene: sul2
locus tag: J8J02_RS15070
old locus tag: J8J02_15070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfonamide-resistant dihydropteroate synthase Sul2
translation: MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADVIDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAYLNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAALTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRALTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR
SIO_010081: J8J02_RS15070
subclass of: SO_0000673
so part of: J8J02_RS15070
location: 1654..2469
location: region:1654-2469:1
so has part: feature:1654-2469:1:exon

WP_001043260.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1654-2469:1:exon

J8J02_RS15075
type: Gene
subclass of: SO_0000704
RO_0002162: 876
gene: aph(3'')-Ib
locus tag: J8J02_RS15075
old locus tag: J8J02_15075
so part of: sequence
location: 2530..3333
location: region:2530-3333:1
so has part: feature:2530-3333:1:exon
subclass of: SO_0000010

72384068
type: Gene
SIO_000068: ncbigene

position:2530:1
position: 2530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3333:1
position: 3333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2530-3333:1:exon

J8J02_RS15075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
gene: aph(3'')-Ib
locus tag: J8J02_RS15075
old locus tag: J8J02_15075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminoglycoside O-phosphotransferase APH(3'')-Ib
translation: MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG
SIO_010081: J8J02_RS15075
subclass of: SO_0000673
so part of: J8J02_RS15075
location: 2530..3333
location: region:2530-3333:1
so has part: feature:2530-3333:1:exon

WP_001082319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2530-3333:1:exon

J8J02_RS15080
type: Gene
subclass of: SO_0000704
RO_0002162: 876
locus tag: J8J02_RS15080
old locus tag: J8J02_15080
so part of: sequence
location: 3333..4169
location: region:3333-4169:1
so has part: feature:3333-4169:1:exon
subclass of: SO_0000010

72384069
type: Gene
SIO_000068: ncbigene

position:4169:1
position: 4169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3333-4169:1:exon

J8J02_RS15080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
locus tag: J8J02_RS15080
old locus tag: J8J02_15080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminoglycoside O-phosphotransferase APH(6)-Id
translation: MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLKPIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATEIAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMMSNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPRRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY
SIO_010081: J8J02_RS15080
subclass of: SO_0000673
so part of: J8J02_RS15080
location: 3333..4169
location: region:3333-4169:1
so has part: feature:3333-4169:1:exon

WP_000480968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3333-4169:1:exon

J8J02_RS15085
type: Gene
subclass of: SO_0000704
RO_0002162: 876
locus tag: J8J02_RS15085
old locus tag: J8J02_15085
so part of: sequence
location: 4475..4717
location: region:4475-4717:1
so has part: feature:4475-4717:1:exon
subclass of: SO_0000010

72384070
type: Gene
SIO_000068: ncbigene

position:4475:1
position: 4475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4717:1
position: 4717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4475-4717:1:exon

J8J02_RS15085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
locus tag: J8J02_RS15085
old locus tag: J8J02_15085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000844627.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MKTAALDLARERQAHEAGARTRATAHERTPQQERQKAAREAERGREAWTLGQGMKKPVAGCYGRLTRWKGGGDVVYMALL
SIO_010081: J8J02_RS15085
subclass of: SO_0000673
so part of: J8J02_RS15085
location: 4475..4717
location: region:4475-4717:1
so has part: feature:4475-4717:1:exon

WP_000844627.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4475-4717:1:exon

J8J02_RS15090
type: Gene
subclass of: SO_0000704
RO_0002162: 876
gene: tetR(A)
locus tag: J8J02_RS15090
old locus tag: J8J02_15090
so part of: sequence
location: complement(4749..5399)
location: region:4749-5399:-1
so has part: feature:4749-5399:-1:exon
subclass of: SO_0000010

72384071
type: Gene
SIO_000068: ncbigene

position:4749:-1
position: 4749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5399:-1
position: 5399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4749-5399:-1:exon

J8J02_RS15090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
gene: tetR(A)
locus tag: J8J02_RS15090
old locus tag: J8J02_15090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000164043.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline resistance transcriptional repressor TetR(A)
translation: MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAGTRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGGTVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD
SIO_010081: J8J02_RS15090
subclass of: SO_0000673
so part of: J8J02_RS15090
location: complement(4749..5399)
location: region:4749-5399:-1
so has part: feature:4749-5399:-1:exon

WP_000164043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4749-5399:-1:exon

J8J02_RS15095
type: Gene
subclass of: SO_0000704
RO_0002162: 876
gene: tet(A)
locus tag: J8J02_RS15095
old locus tag: J8J02_15095
so part of: sequence
location: 5505..6704
location: region:5505-6704:1
so has part: feature:5505-6704:1:exon
subclass of: SO_0000010

72384072
type: Gene
SIO_000068: ncbigene

position:5505:1
position: 5505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6704:1
position: 6704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5505-6704:1:exon

J8J02_RS15095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
gene: tet(A)
locus tag: J8J02_RS15095
old locus tag: J8J02_15095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000804063.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline efflux MFS transporter Tet(A)
translation: MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATASFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWRNSSNSRCT
SIO_010081: J8J02_RS15095
subclass of: SO_0000673
so part of: J8J02_RS15095
location: 5505..6704
location: region:5505-6704:1
so has part: feature:5505-6704:1:exon

WP_209819503.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5505-6704:1:exon

J8J02_RS15100
type: Gene
subclass of: SO_0000704
RO_0002162: 876
locus tag: J8J02_RS15100
old locus tag: J8J02_15100
pseudo: true
so part of: sequence
location: complement(<6671..6859)
location: region:6671-6859:-1
so has part: feature:6671-6859:-1:exon
subclass of: SO_0000010

72384073
type: Gene
SIO_000068: ncbigene

position:6671:-1
position: 6671
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:6859:-1
position: 6859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6671-6859:-1:exon

J8J02_RS15100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
locus tag: J8J02_RS15100
old locus tag: J8J02_15100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001120888.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS91 family transposase
SIO_010081: J8J02_RS15100
subclass of: SO_0000673
so part of: J8J02_RS15100
location: complement(<6671..6859)
location: region:6671-6859:-1
so has part: feature:6671-6859:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6671-6859:-1:exon

J8J02_RS15105
type: Gene
subclass of: SO_0000704
RO_0002162: 876
locus tag: J8J02_RS15105
old locus tag: J8J02_15105
so part of: sequence
location: complement(7413..7697)
location: region:7413-7697:-1
so has part: feature:7413-7697:-1:exon
subclass of: SO_0000010

72384074
type: Gene
SIO_000068: ncbigene

position:7413:-1
position: 7413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7697:-1
position: 7697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7413-7697:-1:exon

J8J02_RS15105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
locus tag: J8J02_RS15105
old locus tag: J8J02_15105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000238497.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein C
translation: MVKGSNKAADRLAKLEEQRARINAEIQRVRAREQQQERKNETRRKVLVGAMILAKVNSSEWPEDRLMAAMDAYLERDHDRALFGLPPRQKDEPG
SIO_010081: J8J02_RS15105
subclass of: SO_0000673
so part of: J8J02_RS15105
location: complement(7413..7697)
location: region:7413-7697:-1
so has part: feature:7413-7697:-1:exon

WP_000238497.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7413-7697:-1:exon

J8J02_RS15205
type: Gene
subclass of: SO_0000704
RO_0002162: 876
locus tag: J8J02_RS15205
pseudo: true
so part of: sequence
location: 8034..>8486
location: region:8034-8486:1
so has part: feature:8034-8486:1:exon
subclass of: SO_0000010

72384093
type: Gene
SIO_000068: ncbigene

position:8034:1
position: 8034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8486:1
position: 8486
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8034-8486:1:exon

J8J02_RS15205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
locus tag: J8J02_RS15205
inference: COORDINATES: protein motif:HMM:NF015354.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: MobA/MobL family protein
SIO_010081: J8J02_RS15205
subclass of: SO_0000673
so part of: J8J02_RS15205
location: 8034..>8486
location: region:8034-8486:1
so has part: feature:8034-8486:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8034-8486:1:exon

J8J02_RS15210
type: Gene
subclass of: SO_0000704
RO_0002162: 876
locus tag: J8J02_RS15210
so part of: sequence
location: 8644..9057
location: region:8644-9057:1
so has part: feature:8644-9057:1:exon
subclass of: SO_0000010

72384094
type: Gene
SIO_000068: ncbigene

position:8644:1
position: 8644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9057:1
position: 9057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8644-9057:1:exon

J8J02_RS15210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
locus tag: J8J02_RS15210
inference: COORDINATES: protein motif:HMM:NF036929.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IncQ-type mobilization protein MobB
translation: MNAIDRVKKSRGINELAEQIEPLAQSMATLADEARQVMSQTQQASEAQAAEWLKAQRQTGAAWVELAKELREVAAEVSSAAQSARSASRGWHWKLWLTVMLASMMPTVVLLIASLLLLDLTPLTTEDGSIWLRLVAR
SIO_010081: J8J02_RS15210
subclass of: SO_0000673
so part of: J8J02_RS15210
location: 8644..9057
location: region:8644-9057:1
so has part: feature:8644-9057:1:exon

WP_010890157.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8644-9057:1:exon

J8J02_RS15215
type: Gene
subclass of: SO_0000704
RO_0002162: 876
locus tag: J8J02_RS15215
so part of: sequence
location: 9156..10025
location: region:9156-10025:1
so has part: feature:9156-10025:1:exon
subclass of: SO_0000010

72384095
type: Gene
SIO_000068: ncbigene

position:9156:1
position: 9156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10025:1
position: 10025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9156-10025:1:exon

J8J02_RS15215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
locus tag: J8J02_RS15215
inference: COORDINATES: protein motif:HMM:NF028103.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-primase RepB domain-containing protein
translation: MNREWSAAEVLQNTPWLKRMNAQGNDVYIRPAEQERHGLVLVDDLSEFDLDDMKAEGREPALVVETSPKNYQAWVKVADAAGGELRGQIARTLASEYDADPASADSRHYGRLAGFTNRKDKHTTRAGYQPWVLLRESKGKTATAGPALVQQAGQQIEQAQRQQEKARRLASLELPERQLSRHRRTALDEYRSEMAGLVKRFGDDLSKCDFIAAQKLASRGRSAEEIGKAMAEASPALAERKPGHEADYIERTVSKVMGLPSVQLARAELARAPAPRQRGMDRGGPDFSM
SIO_010081: J8J02_RS15215
subclass of: SO_0000673
so part of: J8J02_RS15215
location: 9156..10025
location: region:9156-10025:1
so has part: feature:9156-10025:1:exon

WP_229382459.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9156-10025:1:exon

J8J02_RS15115
type: Gene
subclass of: SO_0000704
RO_0002162: 876
locus tag: J8J02_RS15115
old locus tag: J8J02_15115
so part of: sequence
location: 10086..10298
location: region:10086-10298:1
so has part: feature:10086-10298:1:exon
subclass of: SO_0000010

72384075
type: Gene
SIO_000068: ncbigene

position:10086:1
position: 10086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10298:1
position: 10298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10086-10298:1:exon

J8J02_RS15115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
locus tag: J8J02_RS15115
old locus tag: J8J02_15115
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEYEKSASGSVYLIKSDKGYWLPGGFGYTSNKAEAGRFSVADMASLNLDGCTLSLFREDKPFGPGKFLGD
SIO_010081: J8J02_RS15115
subclass of: SO_0000673
so part of: J8J02_RS15115
location: 10086..10298
location: region:10086-10298:1
so has part: feature:10086-10298:1:exon

WP_000455501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10086-10298:1:exon

J8J02_RS15120
type: Gene
subclass of: SO_0000704
RO_0002162: 876
gene: urfF
locus tag: J8J02_RS15120
old locus tag: J8J02_15120
so part of: sequence
location: 10300..10506
location: region:10300-10506:1
so has part: feature:10300-10506:1:exon
subclass of: SO_0000010

72384076
type: Gene
SIO_000068: ncbigene

position:10300:1
position: 10300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10506:1
position: 10506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10300-10506:1:exon

J8J02_RS15120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 876
gene: urfF
locus tag: J8J02_RS15120
old locus tag: J8J02_15120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007857788.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid repression protein F
translation: MKDQKDKQTGDLLASPDAVRQARYAERMKAKGMRQRKFWLTDDEYEALRECLEELRAAQGGGSDPASA
SIO_010081: J8J02_RS15120
subclass of: SO_0000673
so part of: J8J02_RS15120
location: 10300..10506
location: region:10300-10506:1
so has part: feature:10300-10506:1:exon

WP_007857788.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10300-10506:1:exon