Caballeronia zhejiangensis strain A33_M4_a plasmid p3, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Caballeronia.
Prevalence and functional effects of a genomic island for insect symbiosis within Burkholderiaceae
Submitted (22-SEP-2021) Biology Department, University of Texas at Arlington, 501 S. Nedderman Dr., Arlington, TX 76019, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP084287.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: SPAdes v. 3.13.0; Unicycler v. 2.4.8-beta\nAssembly Name :: A33_M4_a\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 60x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 07:38:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,968\nCDSs (total) :: 6,881\nGenes (coding) :: 6,744\nCDSs (with protein) :: 6,744\nGenes (RNA) :: 87\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 65\nncRNAs :: 4\nPseudo Genes (total) :: 137\nCDSs (without protein) :: 137\nPseudo Genes (ambiguous residues) :: 0 of 137\nPseudo Genes (frameshifted) :: 49 of 137\nPseudo Genes (incomplete) :: 101 of 137\nPseudo Genes (internal stop) :: 15 of 137\nPseudo Genes (multiple problems) :: 25 of 137\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008158673.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF039236.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_007873718.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007582733.1
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007582730.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582728.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016836.2
COORDINATES: similar to AA sequence:RefSeq:WP_007582726.1
COORDINATES: protein motif:HMM:NF024854.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007582724.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007582723.1
GO:0047922 - gentisate 1,2-dioxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006411788.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012338326.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024996.2
COORDINATES: protein motif:HMM:NF020551.2
COORDINATES: protein motif:HMM:NF013706.2
COORDINATES: protein motif:HMM:NF024989.2
COORDINATES: similar to AA sequence:RefSeq:WP_019426803.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_016832647.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018928949.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582720.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024865.2
COORDINATES: protein motif:HMM:NF013166.2
GO:0016787 - hydrolase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012432127.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013338327.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013338328.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338329.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013338330.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338331.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013698035.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008130399.1
COORDINATES: similar to AA sequence:RefSeq:WP_011534713.1
GO:0008824 - cyanate hydratase activity [Evidence IEA]
GO:0009636 - response to toxic substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007745916.1
GO:0004089 - carbonate dehydratase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014190841.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012432150.1
COORDINATES: similar to AA sequence:RefSeq:WP_017735097.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
branched-chain amino acid ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: similar to AA sequence:RefSeq:WP_012827762.1
COORDINATES: protein motif:HMM:NF022447.2
COORDINATES: protein motif:HMM:NF024859.2
COORDINATES: protein motif:HMM:NF014573.2
GO:0010181 - FMN binding [Evidence IEA]; GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]; GO:0008753 - NADPH dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023239.2
COORDINATES: similar to AA sequence:RefSeq:WP_012404184.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_007178953.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008346399.1
COORDINATES: similar to AA sequence:RefSeq:WP_012403015.1
COORDINATES: similar to AA sequence:RefSeq:WP_018424343.1
COORDINATES: similar to AA sequence:RefSeq:WP_019470816.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582716.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007582715.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582714.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_007582713.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007582712.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013062.2
GO:0019439 - aromatic compound catabolic process [Evidence IEA]; GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_011951814.1
non-heme iron oxygenase ferredoxin subunit
COORDINATES: protein motif:HMM:NF016084.2
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
4-methyl-o-phthalate reductase/dehydrogenase
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_007582707.1
COORDINATES: similar to AA sequence:RefSeq:WP_007735981.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582702.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007582700.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011355259.1
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: similar to AA sequence:RefSeq:WP_008053407.1
COORDINATES: similar to AA sequence:RefSeq:WP_019565856.1
COORDINATES: similar to AA sequence:RefSeq:WP_003265228.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016903429.1
COORDINATES: similar to AA sequence:RefSeq:WP_010101359.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007741381.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006491127.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006051531.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338300.1
COORDINATES: protein motif:HMM:NF013231.2
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013338305.1
COORDINATES: similar to AA sequence:RefSeq:WP_006051540.1
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013338307.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_013587663.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013338309.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013338312.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338313.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013338314.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007741141.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338316.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338317.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_013338318.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338319.1
GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013338320.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0006635 - fatty acid beta-oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018456641.1
COORDINATES: similar to AA sequence:RefSeq:WP_016842784.1
COORDINATES: similar to AA sequence:RefSeq:WP_018456644.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343443.1
COORDINATES: protein motif:HMM:NF012382.2
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_013338052.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_003808128.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012314466.1
COORDINATES: protein motif:HMM:NF015682.2
COORDINATES: similar to AA sequence:RefSeq:WP_008345191.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345192.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345193.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008344835.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344837.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
thiamine pyrophosphate-requiring protein
COORDINATES: similar to AA sequence:RefSeq:WP_020070489.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338246.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590524.1
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007582585.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344847.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344848.1
COORDINATES: similar to AA sequence:RefSeq:WP_014250533.1
low affinity iron permease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008344852.1
COORDINATES: similar to AA sequence:RefSeq:WP_006397821.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344858.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344860.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_014192792.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_086558362.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344565.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558082.1
COORDINATES: similar to AA sequence:RefSeq:WP_012492245.1
COORDINATES: protein motif:HMM:NF025731.2
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: similar to AA sequence:RefSeq:WP_014973124.1
ParB/Srx family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009240117.1
COORDINATES: similar to AA sequence:RefSeq:WP_017775276.1
COORDINATES: similar to AA sequence:RefSeq:WP_018441931.1
COORDINATES: similar to AA sequence:RefSeq:WP_008352536.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
flagellar biosynthesis anti-sigma factor FlgM
COORDINATES: similar to AA sequence:RefSeq:WP_014253396.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253395.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012354629.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488770.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590946.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343588.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343585.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343582.1
COORDINATES: similar to AA sequence:RefSeq:WP_004525719.1
COORDINATES: similar to AA sequence:RefSeq:WP_007580115.1
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_008346786.1
COORDINATES: similar to AA sequence:RefSeq:WP_009523842.1
COORDINATES: similar to AA sequence:RefSeq:WP_014086591.1
COORDINATES: similar to AA sequence:RefSeq:WP_006156687.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017235543.1
COORDINATES: similar to AA sequence:RefSeq:WP_006156685.1
COORDINATES: similar to AA sequence:RefSeq:WP_006576205.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016833224.1
COORDINATES: protein motif:HMM:NF024140.2
COORDINATES: similar to AA sequence:RefSeq:WP_016344050.1
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018420294.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343340.1
COORDINATES: similar to AA sequence:RefSeq:WP_010108377.1
GO:0004359 - glutaminase activity [Evidence IEA]
GO:0006541 - glutamine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016347451.1
COORDINATES: similar to AA sequence:RefSeq:WP_013342937.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193965.1
COORDINATES: protein motif:HMM:TIGR01187.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012738.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF024808.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012766.2
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612300.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000829080.1
COORDINATES: similar to AA sequence:RefSeq:WP_020191365.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253378.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343335.1
COORDINATES: protein motif:HMM:NF012862.2
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014193239.1
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
flagellar transcriptional regulator FlhC
COORDINATES: similar to AA sequence:RefSeq:WP_014193240.1
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]; GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
flagellar transcriptional regulator FlhD
COORDINATES: similar to AA sequence:RefSeq:WP_014253373.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_014253372.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253371.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630491.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343306.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345060.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345062.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008345064.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343297.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014194253.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008343294.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343291.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194251.1
COORDINATES: similar to AA sequence:RefSeq:WP_006052112.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253109.1
COORDINATES: similar to AA sequence:RefSeq:WP_007362925.1
COORDINATES: protein motif:HMM:NF016876.2
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008343281.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067680.1
sensor domain-containing diguanylate cyclase
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_008343270.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343269.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343258.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343257.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343256.1
COORDINATES: similar to AA sequence:RefSeq:WP_002622894.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343252.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432949.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343240.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343235.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343231.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008343229.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343227.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343225.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343223.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435618.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems.; Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_008343214.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585071.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008343211.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343209.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585076.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343204.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875532.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193870.1
COORDINATES: similar to AA sequence:RefSeq:WP_013591560.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343197.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343195.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700032.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343187.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582531.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343177.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343176.1
COORDINATES: similar to AA sequence:RefSeq:WP_006412423.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343174.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582516.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343170.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582512.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094759.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343165.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343163.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343161.1
COORDINATES: similar to AA sequence:RefSeq:WP_006156725.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343155.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585606.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008343151.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585616.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343144.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343143.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343141.1
COORDINATES: protein motif:HMM:NF025712.2
Lar family restriction alleviation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007585626.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343135.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343128.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343126.1
GO:0003896 - DNA primase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
primase-helicase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018432872.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343122.1
COORDINATES: similar to AA sequence:RefSeq:WP_007588668.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343118.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343114.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343112.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699990.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343102.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343100.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343098.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343094.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875484.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432853.1
toxin co-regulated pilus biosynthesis Q family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242050.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343087.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343086.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343084.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343082.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343080.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_018422861.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018433661.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013958495.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071131.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014253207.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498986.1
GO:0008643 - carbohydrate transport [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011286949.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006481465.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590976.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067782.1
COORDINATES: similar to AA sequence:RefSeq:WP_013689964.1
COORDINATES: similar to AA sequence:RefSeq:WP_007742963.1
COORDINATES: similar to AA sequence:RefSeq:WP_013689340.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007182796.1
COORDINATES: similar to AA sequence:RefSeq:WP_014973181.1
GO:0019867 - outer membrane [Evidence IEA]
glycine zipper 2TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008344537.1
COORDINATES: similar to AA sequence:RefSeq:WP_016355348.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016355349.1
COORDINATES: similar to AA sequence:RefSeq:WP_006406677.1
COORDINATES: similar to AA sequence:RefSeq:WP_006412131.1
COORDINATES: protein motif:HMM:NF019016.2
COORDINATES: similar to AA sequence:RefSeq:WP_008344757.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020702077.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344814.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252075.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008344812.1
COORDINATES: similar to AA sequence:RefSeq:WP_008347256.1
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024736.2
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094374.1
COORDINATES: similar to AA sequence:RefSeq:WP_013591858.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585673.1
COORDINATES: protein motif:HMM:NF016101.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF013014.2
COORDINATES: similar to AA sequence:RefSeq:WP_014006057.1
COORDINATES: similar to AA sequence:RefSeq:WP_003541094.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007736303.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590943.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590942.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013590941.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011812552.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700246.1
COORDINATES: similar to AA sequence:RefSeq:WP_007179252.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516042.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516041.1
COORDINATES: similar to AA sequence:RefSeq:WP_007291430.1
COORDINATES: similar to AA sequence:RefSeq:WP_017772334.1
COORDINATES: similar to AA sequence:RefSeq:WP_018421941.1
COORDINATES: similar to AA sequence:RefSeq:WP_014191411.1
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024871.2
COORDINATES: similar to AA sequence:RefSeq:WP_014250862.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347639.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343776.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435818.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_014252684.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770831.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545522.1
COORDINATES: similar to AA sequence:RefSeq:WP_007849492.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047063.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093213.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193674.1
COORDINATES: similar to AA sequence:RefSeq:WP_011490125.1
COORDINATES: similar to AA sequence:RefSeq:WP_004545839.1
COORDINATES: similar to AA sequence:RefSeq:WP_020379691.1
GO:0070403 - NAD+ binding [Evidence IEA]
Sir2 family NAD-dependent protein deacetylase
COORDINATES: protein motif:HMM:NF028518.2
COORDINATES: similar to AA sequence:RefSeq:WP_007577962.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007739169.1
COORDINATES: protein motif:HMM:NF023197.2
COORDINATES: similar to AA sequence:RefSeq:WP_016354434.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196837.1
COORDINATES: similar to AA sequence:RefSeq:WP_011352787.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611266.1
COORDINATES: similar to AA sequence:RefSeq:WP_011235976.1
COORDINATES: similar to AA sequence:RefSeq:WP_011881631.1
COORDINATES: similar to AA sequence:RefSeq:WP_012426198.1
COORDINATES: similar to AA sequence:RefSeq:WP_010809969.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432978.1
GO:0015103 - inorganic anion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021524.2
COORDINATES: similar to AA sequence:RefSeq:WP_012428382.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007182523.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428380.1
COORDINATES: similar to AA sequence:RefSeq:WP_011153965.1
COORDINATES: similar to AA sequence:RefSeq:WP_011518583.1
COORDINATES: similar to AA sequence:RefSeq:WP_012400488.1
COORDINATES: similar to AA sequence:RefSeq:WP_086557970.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006050709.1
COORDINATES: similar to AA sequence:RefSeq:WP_012401776.1
COORDINATES: protein motif:HMM:NF013109.2
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011880351.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008344493.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344491.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338260.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008344487.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338262.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182830.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093313.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper homeostasis periplasmic binding protein CopC
COORDINATES: similar to AA sequence:RefSeq:WP_020067670.1
COORDINATES: similar to AA sequence:RefSeq:WP_012401425.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589569.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020067667.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093318.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432700.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012401429.1
COORDINATES: similar to AA sequence:RefSeq:WP_012211084.1
COORDINATES: similar to AA sequence:RefSeq:WP_007602728.1
COORDINATES: similar to AA sequence:RefSeq:WP_014972570.1
GO:0008168 - methyltransferase activity [Evidence IEA]
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011798153.1
COORDINATES: similar to AA sequence:RefSeq:WP_004812270.1
COORDINATES: similar to AA sequence:RefSeq:WP_014192549.1
COORDINATES: protein motif:HMM:NF016424.2
COORDINATES: similar to AA sequence:RefSeq:WP_007740894.1
COORDINATES: similar to AA sequence:RefSeq:WP_008923916.1
COORDINATES: similar to AA sequence:RefSeq:WP_008923915.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017518698.1
type VI secretion system tube protein Hcp
COORDINATES: protein motif:HMM:TIGR03363.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193148.1
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008923646.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007580069.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_008923648.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_008923649.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_007580075.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008923651.1
COORDINATES: similar to AA sequence:RefSeq:WP_008923652.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_018422987.1
type VI secretion system-associated FHA domain protein TagH
COORDINATES: similar to AA sequence:RefSeq:WP_008924325.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_008924326.1
type VI secretion system protein TssL, long form
COORDINATES: similar to AA sequence:RefSeq:WP_007580086.1
type VI secretion system membrane subunit TssM
COORDINATES: protein motif:HMM:TIGR03373.1
type VI secretion system-associated protein TagF
COORDINATES: protein motif:HMM:NF025053.2
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013689193.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008920447.1
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: similar to AA sequence:RefSeq:WP_014192938.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738079.1
COORDINATES: similar to AA sequence:RefSeq:WP_018422964.1
COORDINATES: similar to AA sequence:RefSeq:WP_007181785.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
hopanoid biosynthesis associated radical SAM protein HpnJ
COORDINATES: similar to AA sequence:RefSeq:WP_012405730.1
COORDINATES: similar to AA sequence:RefSeq:WP_007732795.1
lysylphosphatidylglycerol synthase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018434626.1
bacteriohopanetetrol glucosamine biosynthesis glycosyltransferase HpnI
COORDINATES: similar to AA sequence:RefSeq:WP_006050718.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345101.1
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
hopanoid biosynthesis-associated protein HpnK
COORDINATES: similar to AA sequence:RefSeq:WP_008345099.1
COORDINATES: similar to AA sequence:RefSeq:WP_016138710.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002938.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013542655.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577394.1
GO:0006112 - energy reserve metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011881069.1
GO:0042314 - bacteriochlorophyll binding [Evidence IEA]
GO:0019684 - photosynthesis, light reaction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007737745.1
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: similar to AA sequence:RefSeq:WP_005669393.1
COORDINATES: protein motif:HMM:NF013867.2
COORDINATES: protein motif:HMM:NF022062.2
COORDINATES: similar to AA sequence:RefSeq:WP_014253339.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344754.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253198.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344750.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008917950.1
GO:0005515 - protein binding [Evidence IEA]; GO:0016279 - protein-lysine N-methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01840.1
COORDINATES: similar to AA sequence:RefSeq:WP_006163598.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012328667.1
COORDINATES: similar to AA sequence:RefSeq:WP_017776738.1
COORDINATES: similar to AA sequence:RefSeq:WP_016345217.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007176153.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008352404.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007181784.1
COORDINATES: similar to AA sequence:RefSeq:WP_014250361.1
COORDINATES: protein motif:HMM:NF015857.2
COORDINATES: similar to AA sequence:RefSeq:WP_009045018.1
iron-containing redox enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011103691.1
COORDINATES: protein motif:HMM:NF015650.2
COORDINATES: protein motif:HMM:NF013502.2
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0008984 - protein-glutamate methylesterase activity [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008344483.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344603.1
COORDINATES: similar to AA sequence:RefSeq:WP_006051424.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007584088.1
COORDINATES: similar to AA sequence:RefSeq:WP_011872576.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_086558169.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611281.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611313.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699837.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611314.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070962.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070961.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006047399.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047398.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070959.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006047396.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047395.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003403629.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094083.1
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018856437.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217396.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004194983.1
GO:0018193 - peptidyl-amino acid modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016348367.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252242.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348365.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253102.1
COORDINATES: similar to AA sequence:RefSeq:WP_007176691.1
COORDINATES: similar to AA sequence:RefSeq:WP_012432714.1
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016348545.1
COORDINATES: similar to AA sequence:RefSeq:WP_012433125.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348543.1
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014250446.1
COORDINATES: similar to AA sequence:RefSeq:WP_012433122.1
GO:0000700 - mismatch base pair DNA N-glycosylase activity [Evidence IEA]
GO:0006285 - base-excision repair, AP site formation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014250448.1
COORDINATES: similar to AA sequence:RefSeq:WP_009524171.1
GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
2-oxoglutarate dehydrogenase E1 component
COORDINATES: similar to AA sequence:RefSeq:WP_007742076.1
GO:0005948 - acetolactate synthase complex [Evidence IEA]
GO:0003984 - acetolactate synthase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
biosynthetic-type acetolactate synthase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014250451.1
COORDINATES: similar to AA sequence:RefSeq:WP_007742628.1
COORDINATES: protein motif:HMM:NF013246.2
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_014253200.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344746.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253202.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253203.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253204.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875462.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420160.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769989.1
COORDINATES: similar to AA sequence:RefSeq:WP_003382746.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009769987.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733652.1
COORDINATES: similar to AA sequence:RefSeq:WP_015933828.1
COORDINATES: similar to AA sequence:RefSeq:WP_017332064.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769986.1
GO:0015293 - symporter activity [Evidence IEA]
GO:0006835 - dicarboxylic acid transport [Evidence IEA]
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_013742245.1
COORDINATES: similar to AA sequence:RefSeq:WP_007732119.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013699609.1
COORDINATES: protein motif:HMM:NF014376.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006050952.1
COORDINATES: similar to AA sequence:RefSeq:WP_012426075.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018438765.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002915.1
COORDINATES: similar to AA sequence:RefSeq:WP_006050957.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018438768.1
COORDINATES: similar to AA sequence:RefSeq:WP_006050960.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00504
glycine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_014193193.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193194.1
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014193197.1
COORDINATES: similar to AA sequence:RefSeq:WP_011882659.1
GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011882660.1
COORDINATES: similar to AA sequence:RefSeq:WP_018928339.1
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011882662.1
COORDINATES: similar to AA sequence:RefSeq:WP_008146599.1
COORDINATES: similar to AA sequence:RefSeq:WP_007731526.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481451.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767528.1
COORDINATES: similar to AA sequence:RefSeq:WP_013640705.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582753.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582752.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582750.1
COORDINATES: similar to AA sequence:RefSeq:WP_019470822.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582746.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007736079.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582742.1
NAD-dependent succinate-semialdehyde dehydrogenase