Turneriella parva DSM 21527 plasmid pTURPA.01, complete sequence.
type: Entry
definition: Turneriella parva DSM 21527 plasmid pTURPA.01, complete sequence.
sequence version: NC_018021.1
sequence date: 2023-05-02
sequence: sequence
division: CON
label: NC_018021.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02232065
keyword: GSC:MIGS:2.1
keyword: RefSeq
source: Turneriella parva DSM 21527
organism: Turneriella parva DSM 21527
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Leptospirales; Leptospiraceae; Turneriella.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002960.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087667\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Turneriella parva H, DSM 21527\ncollection_date :: 1981\nlat_lon :: 50.452258 -104.605694\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Canada\nenvironment :: Missing\nnum_replicons :: 2\nref_biomaterial :: DSM 21527, ATCC BAA-1111, NCTC 11395\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Aerobe\nisol_growth_condt :: 7197860\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04612\nType Strain :: Yes\nFunding Program :: DOE-GEBA 2007\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: contaminated culture medium\nIsolation Comments :: isolated by by K Hovind-Hougen\nCell Shape :: Spiral-shaped\nMotility :: Motile\nTemperature Range :: Mesophile\nGram Staining :: Gram-\n##MIGS-Data-END##\n\n##Genome-Assembly-D…

sequence
subclass of: SO_0000155
sequence length: 25287
topology: circular
so has quality: SO_0000988
location: 1..25287
location: region:1-25287:1
RO_0002162: 869212

NC_018021
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02232065
type: BioSample
SIO_000068: biosample

1
title: The complete plasmid of genome of Turneriella parva DSM 21527
author: Lucas, S.
author: Han, J.
author: Lapidus, A.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Peters, L.
author: Kyrpides, N.
author: Mavromatis, K.
author: Ivanova, N.
author: Mikhailova, N.
author: Chertkov, O.
author: Detter, J.C.
author: Tapia, R.
author: Han, C.
author: Land, M.
author: Hauser, L.
author: Markowitz, V.
author: Cheng, J.-F.
author: Hugenholtz, P.
author: Woyke, T.
author: Wu, D.
author: Gronow, S.
author: Wellnitz, S.
author: Brambilla, E.
author: Klenk, H.-P.
author: Eisen, J.A.
journal: Unpublished

2
title: Direct Submission
author: Lucas, S.
author: Han, J.
author: Lapidus, A.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Peters, L.
author: Kyrpides, N.
author: Mavromatis, K.
author: Ivanova, N.
author: Mikhailova, N.
author: Chertkov, O.
author: Detter, J.C.
author: Tapia, R.
author: Han, C.
author: Land, M.
author: Hauser, L.
author: Markowitz, V.
author: Cheng, J.-F.
author: Hugenholtz, P.
author: Woyke, T.
author: Wu, D.
author: Gronow, S.
author: Wellnitz, S.
author: Brambilla, E.
author: Klenk, H.-P.
author: Eisen, J.A.
journal: Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25287:1
position: 25287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-25287:1:source
so part of: sequence
organism: Turneriella parva DSM 21527
mol type: genomic DNA
strain: DSM 21527
isolation source: contaminated culture medium
culture collection: DSM:21527
type material: type strain of Turneriella parva
plasmid: pTURPA.01
country: Canada
lat lon: 50.452258 N 104.605694 W
collection date: 1981
collected by: K. Hovind-Hougen

869212
type: Taxonomy
SIO_000068: taxonomy

TURPA_RS20980
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS20980
old locus tag: Turpa_0001
so part of: sequence
location: complement(148..1326)
location: region:148-1326:-1
so has part: feature:148-1326:-1:exon
subclass of: SO_0000010

position:148:-1
position: 148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1326:-1
position: 1326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:148-1326:-1:exon

TURPA_RS20980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS20980
old locus tag: Turpa_0001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004503741.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS481 family transposase
translation: MPWKETNVYEERMKFVVAWKEGGWSMTDLCREFGISRVTGYKYLEQYESQGLDGLKDRSRAPKRQPKAVRPKIVEMIIRARDSHPTWGARKLLALIKRRYPGVSDWPCPSTVGRILSRKGLTRKQKRQRKAVPVYPLSHVTEPNDVWCADFKGHFTVGNGLRCDPVTITDAHSRFLLGCKIVPKTNTENTQAIFAEVFREFGMPHAIRTDNGAPFASTSLAGLSRLSVWWLKLGIGLERIEPGKPQQNGRHERMHKTLKEATALPPKSSLDDQQLAFDLFMEEYNYERPHEALRDKLPSELYKRSPREYPEKLPEIAYATNIETCRVNDAGNIGYAGFRIFLSGALAGELVGLEEISERHARIHFASVALGVIDMFTGKVLQYRNPMPIKPL
SIO_010081: TURPA_RS20980
subclass of: SO_0000673
so part of: TURPA_RS20980
location: complement(148..1326)
location: region:148-1326:-1
so has part: feature:148-1326:-1:exon

WP_014805278.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:148-1326:-1:exon

TURPA_RS20985
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS20985
old locus tag: Turpa_0002
so part of: sequence
location: complement(1454..2704)
location: region:1454-2704:-1
so has part: feature:1454-2704:-1:exon
subclass of: SO_0000010

position:1454:-1
position: 1454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2704:-1
position: 2704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1454-2704:-1:exon

TURPA_RS20985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS20985
old locus tag: Turpa_0002
inference: COORDINATES: protein motif:HMM:NF019310.2
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MARPNLKVVYLIVFLDMLGFGVIIPVLRDLTAYLVQNGTSASWPPEVFMGVLMASYSGAQMLSAPFIGRLSDIYGRRPVFLFSAIGNLASYVIWILSSSYWVFLFGRIVSGITGGNIAIAQSILADNTSADERPRAMGLLGAAIGMGFVLGPFLGVVMIKIKHHINLDMPEINHFWFIGIVPLLLSVLPPIMIMFNRGDIWGRASGSDGCSALVAVVQSLARVGDRAIYVAHLLTQLSFVAFEVLFAWILQHQYGFDLKDTYYYFGAQGLILAIVQGGIYRRVEKRRPPEYWVRAGFLASAMGMLLLPWIGYMPATLIFGLTIKTVLLTMLIVFMTLALGFSAPSIQAYASLRAATTTQGQTMGNLQALASMARFVAPLVATSLYAAWLPLPFVFGGIACFVAWIVFRRQTSIQAG
SIO_010081: TURPA_RS20985
subclass of: SO_0000673
so part of: TURPA_RS20985
location: complement(1454..2704)
location: region:1454-2704:-1
so has part: feature:1454-2704:-1:exon

WP_014805279.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1454-2704:-1:exon

TURPA_RS20990
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS20990
old locus tag: Turpa_0003
so part of: sequence
location: 2797..3291
location: region:2797-3291:1
so has part: feature:2797-3291:1:exon
subclass of: SO_0000010

position:2797:1
position: 2797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3291:1
position: 3291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2797-3291:1:exon

TURPA_RS20990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS20990
old locus tag: Turpa_0003
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSFNPLRTLLLAYLQSVPDGTVSRYEAMTNINLFFSRIDKPYSPGAIYHETGKLEHERMIEIKRDKIQVSDASLNWLQNQLTTSPLPGSILGKLTFLVAASLLADKRARQSAMKRLEIDMININPNDAVNASSLGGVELATSICLSNLLLATKRSVLEIGAQY
SIO_010081: TURPA_RS20990
subclass of: SO_0000673
so part of: TURPA_RS20990
location: 2797..3291
location: region:2797-3291:1
so has part: feature:2797-3291:1:exon

WP_014805280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2797-3291:1:exon

TURPA_RS20995
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS20995
old locus tag: Turpa_0004
so part of: sequence
location: complement(3333..4211)
location: region:3333-4211:-1
so has part: feature:3333-4211:-1:exon
subclass of: SO_0000010

position:3333:-1
position: 3333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4211:-1
position: 4211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3333-4211:-1:exon

TURPA_RS20995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS20995
old locus tag: Turpa_0004
inference: COORDINATES: protein motif:HMM:TIGR00573.1
GO function: GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3'-5' exonuclease
translation: MVRDGSTPVEQWALDMRFLAIDLETTGLNPYKHEIIEIGAVAFTIEGLREDFSVLIRPERKMDPKARAIHQISAAELEEKAVSLADGLAAFQKFMPEGSWVFHNAPFDLSFLKQSFAAAKLPWLNRSYYDHLQLSRKLRSERLSHSLDSIKKELGIDTGQAHRALADARATALAFIHLLQTEPDIFASKTRFQKIRRWQRKTEKFEILFPKNFDQIEQYFQGKIRQEAMLKVDFFDKNGYPQRALVQPLELMIFSHNIYIRSRIHPGGQDILIPLARATVHDQELGAINFVQ
SIO_010081: TURPA_RS20995
subclass of: SO_0000673
so part of: TURPA_RS20995
location: complement(3333..4211)
location: region:3333-4211:-1
so has part: feature:3333-4211:-1:exon

WP_014805281.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3333-4211:-1:exon

TURPA_RS21005
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21005
old locus tag: Turpa_0006
so part of: sequence
location: complement(5203..6201)
location: region:5203-6201:-1
so has part: feature:5203-6201:-1:exon
subclass of: SO_0000010

position:5203:-1
position: 5203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6201:-1
position: 6201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5203-6201:-1:exon

TURPA_RS21005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21005
old locus tag: Turpa_0006
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKFDDYVEHHTPVGFLLRVNMRNGTFLAFRGGKPQGWTTAGVDTQIHPMLHVIFLGDEFRVQTRPDSPLQFFPMERSFVKIPFEYGEESGIRHMRIPQEFEGLDLLPGLAFHFNGYWPNVLPAIGDGRRYFISDQKIPRQNIMRIKGKYPRSRLIIFKPEDFMKVKVERERIEEQGKARAVDLVETMTDESISQNAVFAARYFLRNLEWRKMYSIPMFTRIKVSEVEIITSFMEKMYKSAPGNSELEPFADTILDLIDFYDGVVAVLAADFSRVKSWQRKHQTYKRAVLSNLIAACEFQRKFALLEKNLTFAGFLRDVVQVLKDIPAAQIAA
SIO_010081: TURPA_RS21005
subclass of: SO_0000673
so part of: TURPA_RS21005
location: complement(5203..6201)
location: region:5203-6201:-1
so has part: feature:5203-6201:-1:exon

WP_014805283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5203-6201:-1:exon

TURPA_RS21010
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21010
old locus tag: Turpa_0007
so part of: sequence
location: complement(6213..7247)
location: region:6213-7247:-1
so has part: feature:6213-7247:-1:exon
subclass of: SO_0000010

position:6213:-1
position: 6213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7247:-1
position: 7247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6213-7247:-1:exon

TURPA_RS21010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21010
old locus tag: Turpa_0007
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: Fis family transcriptional regulator
translation: MQIWSEYQSRGLWGLWRAHFFAAGSGFEVALIFDGAERVVEVSEAAVAFRPAASLPQVFEWQSGNGLTVKLFAPSPVSDAAGAVWGLLLQLEKTGPEIRPTFFPFMPDAPGLAATLNAALLSPPPVLLLNGQPGVGKRFVLQSLALLHTGQLPDLNRSPVCQIEQADRTTWLVPEIALLELKEQQELWKNARSGDALRVASVYDVGMLSDRKIVHQSLAAMLEPQKLVMPALAKRDAAELQSLGQFWQAFYGPRSDAAANLAFLKKQVLGGAGLSVESILEEGRGLRGVVAEFEKEAIRRAHARVGRSQHKIARLLKVSRGSLQHKLRKYQLESYTSSDADNDE
SIO_010081: TURPA_RS21010
subclass of: SO_0000673
so part of: TURPA_RS21010
location: complement(6213..7247)
location: region:6213-7247:-1
so has part: feature:6213-7247:-1:exon

WP_014805284.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6213-7247:-1:exon

TURPA_RS21015
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21015
old locus tag: Turpa_0008
so part of: sequence
location: 7491..8294
location: region:7491-8294:1
so has part: feature:7491-8294:1:exon
subclass of: SO_0000010

position:7491:1
position: 7491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8294:1
position: 8294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7491-8294:1:exon

TURPA_RS21015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21015
old locus tag: Turpa_0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000637633.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MNALDAWSNRAHLNKVGADVIAIANQKGGEGKTTTSINLAHGLSLAGKRTLLVDMDPQGNSSGIFTDIDSLTKTVADLFTKKYTAQEIIVSTRYEKLDILPAKISLAEVELSTLNVDAPYVMRDALESVKDKYDAVVIDCPPSLSIFTINALGSAGFVVIPLQAEKFSIDGIKGLQGTIEGIKRRINPELKILGALITQLKSNTVLTKTILPVIQNYFPVFNTSISTGVAVGESHLSRRSLLDYNSGVKQAKEYMAFVKEVLDGIKK
SIO_010081: TURPA_RS21015
subclass of: SO_0000673
so part of: TURPA_RS21015
location: 7491..8294
location: region:7491-8294:1
so has part: feature:7491-8294:1:exon

WP_157210654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7491-8294:1:exon

TURPA_RS21020
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21020
old locus tag: Turpa_0009
so part of: sequence
location: 8278..9114
location: region:8278-9114:1
so has part: feature:8278-9114:1:exon
subclass of: SO_0000010

position:8278:1
position: 8278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9114:1
position: 9114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8278-9114:1:exon

TURPA_RS21020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21020
old locus tag: Turpa_0009
inference: COORDINATES: protein motif:HMM:TIGR00180.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MASKSKKLGFAADIFEQDIEGIIRKIRLGEIQPSAEQPRTRFDETITALAESIKTEGLLQPIVVTKEGTHYKIIAGERRYRAAKLLGLEEIECRILRKNAKDTYRLAVIENLQRENLDPIDESRAFRRLKTEYGHTDAELAQIVGKSRNYVSEILSVAEIPSSWIDRAKNAGIESKNLFIQFAQAVKSGSAEQFITAFSSGNLTTVASAKQFNRANKPDVQPKRPAATGAPAEVSCSSEQSGRTAKFTITVQAGQALPSGKVKALESALVEIIKRQLK
SIO_010081: TURPA_RS21020
subclass of: SO_0000673
so part of: TURPA_RS21020
location: 8278..9114
location: region:8278-9114:1
so has part: feature:8278-9114:1:exon

WP_014805286.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8278-9114:1:exon

TURPA_RS21025
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21025
old locus tag: Turpa_0010
so part of: sequence
location: 9406..10296
location: region:9406-10296:1
so has part: feature:9406-10296:1:exon
subclass of: SO_0000010

position:9406:1
position: 9406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10296:1
position: 10296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9406-10296:1:exon

TURPA_RS21025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21025
old locus tag: Turpa_0010
inference: COORDINATES: protein motif:HMM:NF025107.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MYLAIMSDILDSGTWAQLGPAAKALYPVLCKFSNHTFKPVWPGTDELLRLTGFKTKKSLQEAKRELIKTGLIHVVAGTGRTPSHYYFRFDYRGSRVDIEAHRANTASRRGIQESPPERYIDTPQGAAAVAPNHINIHINKLTQTTTNNNPDLSSLLNEFFGSGQKRGDYKERLVQEMLEKYGSLEVGEAVRIAISRGKDGDIRFLEGILKNRDAKKPVAAPGGDGDFSFNALPPALKIWQDHLEPMGRFGSTWYFKALSEVSATFVEEQFKRAGLQIKILKGSSPAASEQGFAAAN
SIO_010081: TURPA_RS21025
subclass of: SO_0000673
so part of: TURPA_RS21025
location: 9406..10296
location: region:9406-10296:1
so has part: feature:9406-10296:1:exon

WP_157210652.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9406-10296:1:exon

TURPA_RS21030
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21030
old locus tag: Turpa_0011
so part of: sequence
location: 10395..11003
location: region:10395-11003:1
so has part: feature:10395-11003:1:exon
subclass of: SO_0000010

position:10395:1
position: 10395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11003:1
position: 11003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10395-11003:1:exon

TURPA_RS21030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21030
old locus tag: Turpa_0011
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLMLYTVVFFFLLCLFGLFWYLQSGSPVRDAYVSPLFGDHEKNLTTEDLSLLLGLKRIEHLADRGRWLLFISVLLLVIEFFAVLAMLIESRGQMYVVSAVNHGYVIGGFIYLLVSVLAVIFSVRLVSAEKSLSIANPFERIEAWEHKVIQADAEQKKRIVLYLNQESGRLEGYFAFVFGLVGCGVTLLMIWVASWLTQFVR
SIO_010081: TURPA_RS21030
subclass of: SO_0000673
so part of: TURPA_RS21030
location: 10395..11003
location: region:10395-11003:1
so has part: feature:10395-11003:1:exon

WP_014805288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10395-11003:1:exon

TURPA_RS21035
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21035
old locus tag: Turpa_0012
so part of: sequence
location: 11014..13407
location: region:11014-13407:1
so has part: feature:11014-13407:1:exon
subclass of: SO_0000010

position:11014:1
position: 11014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13407:1
position: 13407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11014-13407:1:exon

TURPA_RS21035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21035
old locus tag: Turpa_0012
inference: COORDINATES: protein motif:HMM:NF012956.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: discoidin domain-containing protein
translation: MDITRSRSATAAQVRSLSPSLKVLSQGGSVSFQIERTAPHCSAVVEYDSPAWLNRLQFESSLHVLADIAWSDDGVHFFRVHGVRHESRGDTREFYFPLTVAKFLQVHFYQEGGPVHASELRNFQTKFHSQVQLKASSESDRLWTAANLVDRREDYGWASVIREKNEPEEVQLDFGGLYFIDGVQMKAVADELNYFPSAFQIQLSEDGNLWQTLHSEDHFFTASACWNAWSFNPTRARWVKIAINKSAHYKKGEYQSKILDIAVSGVAARWIQNDQQAPASLRMASENVPGAVLLAGNGIAAPSRVIQSDDSRLRNASTEYRGIMQFARDNEVSQEKAVQANDSRLKAATTLAPGIVQLAKNGEVRAGAAVQADDTRLARTSTEAPGIVQLANDRESRSGVAVQGSDSRLKGASTDAAGIVTLAQDGEVAAGKAVQANDSRLRLATQAWPGIVLLAQAGEIASAKAVAADDPRLIEADESHKGRVQLARHGEVIEKRAVQANDPRLATATEENRGIVQFSRNGVATPGQAVQATDSRLTDARRPLAHAHEEYAKTIHEFSQHTGNLQVKRSGKTALPEGFNAIADINIPLVIENTEGVAASFNGGSVHAAETTASFHVSQTDSAIQAASRDKAAATLVSANAYALHLPRSALGVKSSEKALHAEGRVLVEGAVTIQGAQSVVVSLPRASNEAFVEGDLLTIENGVAAKMRQDAQVCVGVFTKTAGLSLESANATVRAAVSGIVSLRVFGQVKAGDRLVLNSGQPGTCRVAQGQEKIVAIALEAVQQDREKPVMSILVR
SIO_010081: TURPA_RS21035
subclass of: SO_0000673
so part of: TURPA_RS21035
location: 11014..13407
location: region:11014-13407:1
so has part: feature:11014-13407:1:exon

WP_014805289.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11014-13407:1:exon

TURPA_RS21040
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
gene: mtnB
locus tag: TURPA_RS21040
old locus tag: Turpa_0013
so part of: sequence
location: 13404..14042
location: region:13404-14042:1
so has part: feature:13404-14042:1:exon
subclass of: SO_0000010

position:13404:1
position: 13404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14042:1
position: 14042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13404-14042:1:exon

TURPA_RS21040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
gene: mtnB
locus tag: TURPA_RS21040
old locus tag: Turpa_0013
EC number: 4.2.1.109
inference: COORDINATES: protein motif:HMM:TIGR03328.1
GO function: GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
GO process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methylthioribulose 1-phosphate dehydratase
translation: MNQADLASTVVARQLAECGNLFHRWQWSLSTSSNYSALLPDSVVAISRSGVDKQFMTANDFLAVDLHGAPLANFKEIRPSAETELHCHIYRKAQGQALPIASVLHTHSKFAVYFSRRFAAEGVVRFSGFEMQKIFDGIDTHDSSIEVPIFANSQKMSDITEKFDAYLAKNAWPAAYLIEGHGVYAWGKSVYHAKQKLEALEHLFEQKYMEEK
SIO_010081: TURPA_RS21040
subclass of: SO_0000673
so part of: TURPA_RS21040
location: 13404..14042
location: region:13404-14042:1
so has part: feature:13404-14042:1:exon

WP_014805290.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13404-14042:1:exon

TURPA_RS21045
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21045
old locus tag: Turpa_0014
so part of: sequence
location: 14043..14582
location: region:14043-14582:1
so has part: feature:14043-14582:1:exon
subclass of: SO_0000010

position:14043:1
position: 14043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14582:1
position: 14582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14043-14582:1:exon

TURPA_RS21045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21045
old locus tag: Turpa_0014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007192929.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acireductone dioxygenase
translation: MQSQLTICPEGNSSQKEVYSDFETIKKHLAAVGIGYERWVAEQPLAADASPEEVAKAYKTSIDKIMQQGYKTYDVVSLHPDAPQASEARKKFIDEHTHGEDEVRFFVDGSGMFYIHKAGKVFMMLCTKGDFINLPAGTTHWFDMGPKPFFKAIRVFNNPEGWVATFTGSDISQKFPKYE
SIO_010081: TURPA_RS21045
subclass of: SO_0000673
so part of: TURPA_RS21045
location: 14043..14582
location: region:14043-14582:1
so has part: feature:14043-14582:1:exon

WP_014805291.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14043-14582:1:exon

TURPA_RS21050
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
gene: mtnC
locus tag: TURPA_RS21050
old locus tag: Turpa_0015
so part of: sequence
location: 14583..15290
location: region:14583-15290:1
so has part: feature:14583-15290:1:exon
subclass of: SO_0000010

position:14583:1
position: 14583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15290:1
position: 15290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14583-15290:1:exon

TURPA_RS21050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
gene: mtnC
locus tag: TURPA_RS21050
old locus tag: Turpa_0015
EC number: 3.1.3.77
inference: COORDINATES: protein motif:HMM:TIGR01691.1
GO function: GO:0016862 - intramolecular oxidoreductase activity, interconverting keto- and enol-groups [Evidence IEA]; GO:0016791 - phosphatase activity [Evidence IEA]
GO process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acireductone synthase
translation: MKIQAVVCDIEGTTSSISFVHRVLFPLSLERMHDYLRENAADRELKAQLAELWVRLFPGQPQSADMPEILERKLVEFIQNDVKDTTLKWVQGKIWKQAFESGVVKGHVYPEVAGFFERWISQGMSLYIYSSGSVEAQQLLFRHSQAGDLTRFLRGYFDTTTGPKRETDSYRSIAKSIGVEPASILFLSDITAELDAAQTAGFKTCLLLRGAAATPAGYTGPTAADFAGVHQQFFL
SIO_010081: TURPA_RS21050
subclass of: SO_0000673
so part of: TURPA_RS21050
location: 14583..15290
location: region:14583-15290:1
so has part: feature:14583-15290:1:exon

WP_014805292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14583-15290:1:exon

TURPA_RS21055
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
gene: glpK
locus tag: TURPA_RS21055
old locus tag: Turpa_0016
so part of: sequence
location: 15349..16821
location: region:15349-16821:1
so has part: feature:15349-16821:1:exon
subclass of: SO_0000010

position:15349:1
position: 15349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16821:1
position: 16821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15349-16821:1:exon

TURPA_RS21055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
gene: glpK
locus tag: TURPA_RS21055
old locus tag: Turpa_0016
EC number: 2.7.1.30
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001286753.1
GO function: GO:0004370 - glycerol kinase activity [Evidence IEA]
GO process: GO:0006071 - glycerol metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycerol kinase GlpK
translation: MAKPYIVTIDQGTTGSRVFLISERGEVISSAYEEFTQHFPRPGWVEHDAEEIWASVEKLLARAIEASDAAAIGITNQRETTVVWEKSTGKPIHPAIVWQCRRTADYCEQLKKEGRAELFRKKTGLVLDAYFSGTKIKYILDNVGGARSRAENGELLFGTIDTFLLNRLTGEHKTDFTNASRTLIFNIHERKWDAELCEILKIPQKILPSAQASSSLFGKTKGLKALPDGVPVYSLIGDQQSALYGQLCHNPGEAKNTYGTGCFVVMNLGDKFLESKNGLITTLACDAHGNPVYALEGSIFIGGAVVQWLRDKMHFFDDSGKSESLAKSANDESEVVFVPAFAGLGAPYWDQNARGAILGLTRDTTSAQITQAALKAIALQSYDVIAAMQADSGLKLPVLKVDGGATRNNYLMEFQAGVLGASVVAPRNAETTVLGAAYLAGLGAKIWSSPEDLASLNPPAATFHPVMTAAQRERELKLWKDAIGRVLTTR
SIO_010081: TURPA_RS21055
subclass of: SO_0000673
so part of: TURPA_RS21055
location: 15349..16821
location: region:15349-16821:1
so has part: feature:15349-16821:1:exon

WP_014805293.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15349-16821:1:exon

TURPA_RS21060
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
gene: bcp
locus tag: TURPA_RS21060
old locus tag: Turpa_0017
so part of: sequence
location: complement(16831..17304)
location: region:16831-17304:-1
so has part: feature:16831-17304:-1:exon
subclass of: SO_0000010

position:16831:-1
position: 16831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17304:-1
position: 17304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16831-17304:-1:exon

TURPA_RS21060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
gene: bcp
locus tag: TURPA_RS21060
old locus tag: Turpa_0017
EC number: 1.11.1.24
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020776520.1
GO function: GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin-dependent thiol peroxidase
translation: MLAAGKKVPASLTGILVGEGEPKKIKLAELWQKKPLILYFYPKDSTPGCTTEAQCFRDNSAALKKAGYTVVGCSRDNEKAHKKFIDAQELNFPLLFDDTGKITEGFGVWAEKSMYGRKYMGILRATFVIDTTGKITHVFDKVSVKTHALDILQAVNA
SIO_010081: TURPA_RS21060
subclass of: SO_0000673
so part of: TURPA_RS21060
location: complement(16831..17304)
location: region:16831-17304:-1
so has part: feature:16831-17304:-1:exon

WP_014805294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16831-17304:-1:exon

TURPA_RS21065
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21065
old locus tag: Turpa_0018
so part of: sequence
location: complement(17304..18155)
location: region:17304-18155:-1
so has part: feature:17304-18155:-1:exon
subclass of: SO_0000010

position:18155:-1
position: 18155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17304-18155:-1:exon

TURPA_RS21065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21065
old locus tag: Turpa_0018
inference: COORDINATES: protein motif:HMM:NF013624.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAAFEPFGGRSCNTSADLLQALISSKMPPGIRLAESAILPVDFATAWQILQPQVLKTKPDLVLLMGEKQGGSLTIESHARNLRRHGSATRKIAADKARFYTSKIVSEQLLAELPLATRQLFMLSENAGDYLCNFVYFMMLSVEPAINALFLHVPARSPQQFRKGAADDVKAVCDLIFSVKRILSGAGNNSDTKAIDGSGTNGMPRENQRRLLMADKHLVACEQEHEMITVLKHFKKGSSKENVDKMQNACRSWKKDSGAKYKPKNRDNFYKYLQEKGVLGKLS
SIO_010081: TURPA_RS21065
subclass of: SO_0000673
so part of: TURPA_RS21065
location: complement(17304..18155)
location: region:17304-18155:-1
so has part: feature:17304-18155:-1:exon

WP_041949676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17304-18155:-1:exon

TURPA_RS21070
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21070
old locus tag: Turpa_0019
so part of: sequence
location: 18222..19193
location: region:18222-19193:1
so has part: feature:18222-19193:1:exon
subclass of: SO_0000010

position:18222:1
position: 18222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19193:1
position: 19193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18222-19193:1:exon

TURPA_RS21070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21070
old locus tag: Turpa_0019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002773010.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome-c peroxidase
translation: MKKYLIYFIAAVAALQCGPKVDYAELRTRAKSAFGTLPAKMPGSEKDTPELIALGKMLYNDRRLSINDTQSCASCHILEGKKGGVDNTKFSPGAKGSLGGRNAPTTLNAGFHFVQFWDGRAANLTEQAKGPVLNPVEMGMPSEKAVVDKISQVAEYKEAFPKAFPGSKNAITYQNIAEAIAAFERTLITRDRFDDFINGDDKAMTKEELLGMQTFMNQGCTTCHIGQLLGGNSYRKMGQARPYETKDLGRFDVTKKEEDKFMFKVPSLRNVALTEPYFHDGSAATLSEAVAKMAYHQLGKELGEKDVASIVTFLKALTDKQRQ
SIO_010081: TURPA_RS21070
subclass of: SO_0000673
so part of: TURPA_RS21070
location: 18222..19193
location: region:18222-19193:1
so has part: feature:18222-19193:1:exon

WP_014805296.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18222-19193:1:exon

TURPA_RS21075
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21075
old locus tag: Turpa_0020
so part of: sequence
location: 19271..20050
location: region:19271-20050:1
so has part: feature:19271-20050:1:exon
subclass of: SO_0000010

position:19271:1
position: 19271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20050:1
position: 20050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19271-20050:1:exon

TURPA_RS21075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21075
old locus tag: Turpa_0020
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGRQLLEIAGRFLIYSILLSLINFLSAAHALNPDNDYRDAAQTFAQRDMASTQKAISMLEKVLEQKPDHLDSQALIAYAYAHEAFILSQLGESGSDYQNSAEAFIKAVQTQQPQNASAKKASVFLLMSSGKVADARKILEKDLNDKEADADIWYMYALAGDADKTVNHLNRALTLNPDHVWIYTDMAFRALKMGDAVVAEKWIKALEGRRPAVAEVPLLYAVLAAQKKDKKRAQEQWAEFVRRSPESPLVAKFSPAKKK
SIO_010081: TURPA_RS21075
subclass of: SO_0000673
so part of: TURPA_RS21075
location: 19271..20050
location: region:19271-20050:1
so has part: feature:19271-20050:1:exon

WP_014805297.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19271-20050:1:exon

TURPA_RS21080
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21080
old locus tag: Turpa_0021
so part of: sequence
location: complement(20051..20566)
location: region:20051-20566:-1
so has part: feature:20051-20566:-1:exon
subclass of: SO_0000010

position:20051:-1
position: 20051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20566:-1
position: 20566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20051-20566:-1:exon

TURPA_RS21080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21080
old locus tag: Turpa_0021
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKPAIVLIFSLLMAGGLAAECEKLERSPESRRIWSEFAARYAPTVYPAEVRLCIGKKYFYEVKGGARMASVLDRQRARILLRQRNASQLRHELAHLYLDLAWRVLPYTISEPLANVMQAPPKCNTVLSKKPAASIPERWQARGGASACEIESLVSDLLKAPKEMRDSLPLN
SIO_010081: TURPA_RS21080
subclass of: SO_0000673
so part of: TURPA_RS21080
location: complement(20051..20566)
location: region:20051-20566:-1
so has part: feature:20051-20566:-1:exon

WP_157210653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20051-20566:-1:exon

TURPA_RS21085
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21085
old locus tag: Turpa_0022
so part of: sequence
location: complement(20538..20756)
location: region:20538-20756:-1
so has part: feature:20538-20756:-1:exon
subclass of: SO_0000010

position:20538:-1
position: 20538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20756:-1
position: 20756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20538-20756:-1:exon

TURPA_RS21085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21085
old locus tag: Turpa_0022
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010572574.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAEKIRLKVKCHACGYVMEGTSKYGKGNYHPEGLDFQFTAVGKLVDKAGNSRVKGEVTILCPNCETRNRFDI
SIO_010081: TURPA_RS21085
subclass of: SO_0000673
so part of: TURPA_RS21085
location: complement(20538..20756)
location: region:20538-20756:-1
so has part: feature:20538-20756:-1:exon

WP_014805299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20538-20756:-1:exon

TURPA_RS21090
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21090
old locus tag: Turpa_0023
so part of: sequence
location: complement(20756..21685)
location: region:20756-21685:-1
so has part: feature:20756-21685:-1:exon
subclass of: SO_0000010

position:21685:-1
position: 21685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20756-21685:-1:exon

TURPA_RS21090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21090
old locus tag: Turpa_0023
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTAEIRTSTAEWLSFWDTIRNPDRMTLLIGFVILMFFVVFLGYFGTRSLVRSLDFYRMTFSSEFVEDVRPGTKIRYQGALEIGEVEYLVSGTSGHRIYAKIRKDFPIPRAASRASLSSWGYFGAKFINIEVVPSSADDAVYSLEHSMPLEKIVNSSIMFQQYYDAIRSDNGNLSVLETRLKQLRKTVVDLKRIPYVQRVAARNVVRNTTRMMNGFFSMVNSTSSDLYGMLLKVNGASEFLVYDLNKNLPKIKANMLKLEQSVAYGGESFSARLLHEETLYLLLLDYARYANEKLNDMASAPYRIFFNN
SIO_010081: TURPA_RS21090
subclass of: SO_0000673
so part of: TURPA_RS21090
location: complement(20756..21685)
location: region:20756-21685:-1
so has part: feature:20756-21685:-1:exon

WP_014805300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20756-21685:-1:exon

TURPA_RS21095
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21095
old locus tag: Turpa_0024
so part of: sequence
location: complement(21682..22503)
location: region:21682-22503:-1
so has part: feature:21682-22503:-1:exon
subclass of: SO_0000010

position:21682:-1
position: 21682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22503:-1
position: 22503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21682-22503:-1:exon

TURPA_RS21095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21095
old locus tag: Turpa_0024
inference: COORDINATES: protein motif:HMM:NF013100.2
GO function: GO:0008658 - penicillin binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: penicillin-binding transpeptidase domain-containing protein
translation: MRISKGAVNRILLSAFCLGCGLGAAGAAKKPRAAFVVVEVGSGEPRTLAESGTEELAPVGSLLKPFAAWYLLEKGLDARQTILCPAERKREADLRCWTPEGHGAVNLGEALVHSCNYFFLSLFRGQSIPQFEIWMRERFQWPENLRIEKPVHVYGYDLDSGIAVSRLVTMYARLLEASAVKNPHAALITDSLAGTWRGTLRDFCRLLGNQKKYTFLWGKTGTVREGKHQYGIAVLHLKNNSTGKKLLLLCYERRKTGSQAALNALAVLQKYHP
SIO_010081: TURPA_RS21095
subclass of: SO_0000673
so part of: TURPA_RS21095
location: complement(21682..22503)
location: region:21682-22503:-1
so has part: feature:21682-22503:-1:exon

WP_014805301.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21682-22503:-1:exon

TURPA_RS21100
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21100
old locus tag: Turpa_0025
so part of: sequence
location: 22525..23199
location: region:22525-23199:1
so has part: feature:22525-23199:1:exon
subclass of: SO_0000010

position:22525:1
position: 22525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23199:1
position: 23199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22525-23199:1:exon

TURPA_RS21100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21100
old locus tag: Turpa_0025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015745647.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: radical SAM protein
translation: MDVTAKREDLKLTVNEIFYSIQGEGSYALHPCVFVRLTGCNLRCTWCDTTYSFYEGEPQTITQILQTVTGYAAKNVEITGGEPLLQKNVYPLMHALHESGHKVLLETSGSVKVNQVPQFVHTILDMKAPGSGEHKKNRYENLQLLKSSDDLKIVIANHEDFQFAEDLIREHKVEALLQNPVIIQPVFGELNLAEAGEWLKNSPLNLRLGMQLHKYIYEPTLRAV
SIO_010081: TURPA_RS21100
subclass of: SO_0000673
so part of: TURPA_RS21100
location: 22525..23199
location: region:22525-23199:1
so has part: feature:22525-23199:1:exon

WP_014805302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22525-23199:1:exon

TURPA_RS21105
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
gene: queD
locus tag: TURPA_RS21105
old locus tag: Turpa_0026
so part of: sequence
location: 23199..23555
location: region:23199-23555:1
so has part: feature:23199-23555:1:exon
subclass of: SO_0000010

position:23555:1
position: 23555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23199-23555:1:exon

TURPA_RS21105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
gene: queD
locus tag: TURPA_RS21105
old locus tag: Turpa_0026
EC number: 4.1.2.50
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014034208.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]
GO process: GO:0008616 - queuosine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 6-carboxytetrahydropterin synthase QueD
translation: MQIEKEFIFDSAHFLPLVPENHKCRKLHGHTYRVTIAVSGEINPQGWIMDFADIGDIVKPIVRSIDHTLLNSVEGLENPTAENIARWLFDRIKEKLPELAFVIVQEGESSRVIYPQRQ
SIO_010081: TURPA_RS21105
subclass of: SO_0000673
so part of: TURPA_RS21105
location: 23199..23555
location: region:23199-23555:1
so has part: feature:23199-23555:1:exon

WP_014805303.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23199-23555:1:exon

TURPA_RS21110
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
gene: queC
locus tag: TURPA_RS21110
old locus tag: Turpa_0027
so part of: sequence
location: 23555..24268
location: region:23555-24268:1
so has part: feature:23555-24268:1:exon
subclass of: SO_0000010

position:24268:1
position: 24268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23555-24268:1:exon

TURPA_RS21110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
gene: queC
locus tag: TURPA_RS21110
old locus tag: Turpa_0027
EC number: 6.3.4.20
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005221664.1
GO process: GO:0008616 - queuosine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 7-cyano-7-deazaguanine synthase QueC
translation: MAPRAVVLLSGGLDSATCMYLAREHGFEVEAISFNYQQRHSVELTAAQRLAATCGANHTIIDVNLRAIGASALTSDIAVPKGGTHLQGEAVIPSTYVPVRNLVFLSLAYALAEAKDCSAIFTGVNAIDYSGYPDCRPDFIASFAQTAALASKSGREGRAPEILTPLIAMTKSDIATEALRLAVPIHLTWSCYDPQTAGDMLKPCEQCDACLLRAQGFAALALQLSKEVIFGSPVKVA
SIO_010081: TURPA_RS21110
subclass of: SO_0000673
so part of: TURPA_RS21110
location: 23555..24268
location: region:23555-24268:1
so has part: feature:23555-24268:1:exon

WP_014805304.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23555-24268:1:exon

TURPA_RS21115
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21115
old locus tag: Turpa_0028
so part of: sequence
location: complement(24228..24815)
location: region:24228-24815:-1
so has part: feature:24228-24815:-1:exon
subclass of: SO_0000010

position:24228:-1
position: 24228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24815:-1
position: 24815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24228-24815:-1:exon

TURPA_RS21115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21115
old locus tag: Turpa_0028
EC number: 3.6.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012844006.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Maf family protein
translation: MSNEFASVQIVLASASPRRREILEKLGFRCEVRPANIDELAIRDADAEKQTLRIAHEKARVIAAPGVLTVAADTIVVLDGLVLEKPQDRPEAISMLSRLSGRPHLVHTAVSLVFPRGEKAEIIETTRVFFAELPASVIEAYADTPSPYDKAGGYGVQDAFGMQNIERIEGCYFNVMGFPSSRFMRLLRENRKLLL
SIO_010081: TURPA_RS21115
subclass of: SO_0000673
so part of: TURPA_RS21115
location: complement(24228..24815)
location: region:24228-24815:-1
so has part: feature:24228-24815:-1:exon

WP_014805305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24228-24815:-1:exon

TURPA_RS21120
type: Gene
subclass of: SO_0000704
RO_0002162: 869212
locus tag: TURPA_RS21120
old locus tag: Turpa_0029
so part of: sequence
location: 24858..25244
location: region:24858-25244:1
so has part: feature:24858-25244:1:exon
subclass of: SO_0000010

position:24858:1
position: 24858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25244:1
position: 25244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24858-25244:1:exon

TURPA_RS21120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 869212
locus tag: TURPA_RS21120
old locus tag: Turpa_0029
inference: COORDINATES: protein motif:HMM:NF016156.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF423 domain-containing protein
translation: MRFILTAGISGFLAVFFGAFGSHVLKASLGEKFFSVFQTANQYHFWHTLALLAVALVRIDRPQKFFTAACWAYLAGLLLFSGNLYLYAVYQQRIFAMLAPLGGAAYMLGWLFLTLGAVRVFAPASKPD
SIO_010081: TURPA_RS21120
subclass of: SO_0000673
so part of: TURPA_RS21120
location: 24858..25244
location: region:24858-25244:1
so has part: feature:24858-25244:1:exon

WP_014805306.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24858-25244:1:exon