Halobacillus halophilus DSM 2266 plasmid PL16, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Halobacillus.
Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus
Submitted (01-MAR-2012) Max-Planck Institute of Biochemistry, Dept Membrane Biochemistry, Am Klopferspitz 18, D-82152 Martinsried, GERMANY
REFSEQ INFORMATION: The reference sequence is identical to\nHE717024.1.\nAccession numbers of all replicons in this genome project:\nHE717023, HE717024, HE717025.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:13:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,117\nCDSs (total) :: 4,025\nGenes (coding) :: 3,995\nCDSs (with protein) :: 3,995\nGenes (RNA) :: 92\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 30\nCDSs (without protein) :: 30\nPseudo Genes (ambiguous residues) :: 0 of 30\nPseudo Genes (frameshifted) :: 12 of 30\nPseudo Genes (incomplete) :: 18 of 30\nPseudo Genes (internal stop) :: 2 of 30\nPseudo Genes (multiple problems) :: 2 of 30\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013351558.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010094271.1
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: protein motif:HMM:NF025107.2