Priestia flexa strain SSAI1 plasmid unnamed2, complete sequence.
type: Entry
definition: Priestia flexa strain SSAI1 plasmid unnamed2, complete sequence.
sequence version: NZ_CP060275.1
sequence date: 2023-04-03
sequence: sequence
division: CON
label: NZ_CP060275.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN15599909
keyword: RefSeq
source: Priestia flexa
organism: Priestia flexa
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Priestia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP060275.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.11.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/03/2023 03:16:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,371\nCDSs (total) :: 4,263\nGenes (coding) :: 4,196\nCDSs (with protein) :: 4,196\nGenes (RNA) :: 108\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 98\nncRNAs :: 5\nPseudo Genes (total) :: 67\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 67\nPseudo Genes (frameshifted) :: 15 of 67\nPseudo Genes (incomplete) :: 54 of 67\nPseudo Genes (internal stop) :: 15 of 67\nPseudo Genes (multiple problems) :: 16 of 67\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 9846
topology: circular
so has quality: SO_0000988
location: 1..9846
location: region:1-9846:1
RO_0002162: 86664

NZ_CP060275
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN15599909
type: BioSample
SIO_000068: biosample

1
title: Characterization and genomic analysis of arsenic resistant and arsenite oxidizing Bacillus flexus strain SSAI1
author: Mujawar, S.Y.
author: Dubey, S.K.
journal: Unpublished

2
title: Direct Submission
author: Mujawar, S.Y.
author: Dubey, S.K.
journal: Submitted (24-JUL-2020) Microbiology, Goa University, Taleigao Plateau, Panaji, GOA 403206, India

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9846:1
position: 9846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9846:1:source
so part of: sequence
organism: Priestia flexa
mol type: genomic DNA
strain: SSAI1
isolation source: sediment sample
plasmid: unnamed2
country: India: Tuem, Goa
collection date: 2016-06-01

86664
type: Taxonomy
SIO_000068: taxonomy

H1W68_RS21725
type: Gene
subclass of: SO_0000704
RO_0002162: 86664
locus tag: H1W68_RS21725
so part of: sequence
location: 256..780
location: region:256-780:1
so has part: feature:256-780:1:exon
subclass of: SO_0000010

72446635
type: Gene
SIO_000068: ncbigene

position:256:1
position: 256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:780:1
position: 780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:256-780:1:exon

H1W68_RS21725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 86664
locus tag: H1W68_RS21725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019413165.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2695 domain-containing protein
translation: MDSLLELKDELIKGQKLAMQGSYQRRAPSKKAIPHLLTARKGLKEYVKQYSNDALAWQLLSQAEEYLLNYNAALMALQNAVSLDKKDKKLLKRLALLKEYASKWQELDMTPEQLQSLEIYLQEKLEIYGCDHTLVYTREWLDISTLHSKKSKIVKALQNQGGFCDCEVLMNVID
SIO_010081: H1W68_RS21725
subclass of: SO_0000673
so part of: H1W68_RS21725
location: 256..780
location: region:256-780:1
so has part: feature:256-780:1:exon

WP_138116168.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:256-780:1:exon

H1W68_RS21730
type: Gene
subclass of: SO_0000704
RO_0002162: 86664
locus tag: H1W68_RS21730
so part of: sequence
location: 1155..2384
location: region:1155-2384:1
so has part: feature:1155-2384:1:exon
subclass of: SO_0000010

72446636
type: Gene
SIO_000068: ncbigene

position:1155:1
position: 1155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2384:1
position: 2384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1155-2384:1:exon

H1W68_RS21730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 86664
locus tag: H1W68_RS21730
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012960592.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fic family protein
translation: MNYEKLSKVFYKAPNQYIDEYVKRYNGYGTYRTNLYIMPVLKGKHVDEPVELFIVNTDPLMKLHEEIFVNSFNIREMISRMPRSAVRPYFDKLLINELQSTNEIEGIRSTKKELSEILTIVNENKPTSKNKRFIGLMKTYRYISKIKDFEKIEDFRKLYDDIVADEIPENDQPDGVLFRKNIVNVTDGSRATHVGVYPESSIRDYLNNLLVFLKTSNTPDLYKYMLAHYYYEYIHPFYDGNGRTGRLFVCSYIEKKLDPFTAVSLSYTINQDKQKYYKALEELSNPKNKGEATFYCQSMLEILRDGQESLIEDLSLGLAKVEKIENHLQNLEWADNDTKQLLATLLSVNIFVGHVNVLTNEELQESLSFTRYKVNKILSDLETRGIVMKVKQRPTTYDLEEDYVDAVLS
SIO_010081: H1W68_RS21730
subclass of: SO_0000673
so part of: H1W68_RS21730
location: 1155..2384
location: region:1155-2384:1
so has part: feature:1155-2384:1:exon

WP_138116150.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1155-2384:1:exon

H1W68_RS21735
type: Gene
subclass of: SO_0000704
RO_0002162: 86664
locus tag: H1W68_RS21735
so part of: sequence
location: 2973..3914
location: region:2973-3914:1
so has part: feature:2973-3914:1:exon
subclass of: SO_0000010

72446637
type: Gene
SIO_000068: ncbigene

position:2973:1
position: 2973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3914:1
position: 3914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2973-3914:1:exon

H1W68_RS21735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 86664
locus tag: H1W68_RS21735
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLITGKKRIRKCGKYIKHLSESKKAYIGLPITEDVSSRLKEIGFKELSLGESLVPSPKLGPISRFNANGKEVAQRHLPKETVYRQQHWEWEDWNGKSYSRTVDIPYQRYPRKLIPAPWLALTIIQSKDKKFVIAGDVIVKGETTEENITHQINLMLELFKSAEILQENLESYQIPKIERLNWELLPAGNMPWEKFKQKLTPILDKKSKGKKMIIAERLEKVSSHNPDFHAIGTNGYHGYIVFGFTDINLYIFETAEYGNATYVFEGDWKTVSSRTKSEIIQGNLHKHRFVHLEGWNEKIDNLFSSNDENKMIS
SIO_010081: H1W68_RS21735
subclass of: SO_0000673
so part of: H1W68_RS21735
location: 2973..3914
location: region:2973-3914:1
so has part: feature:2973-3914:1:exon

WP_138116148.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2973-3914:1:exon

H1W68_RS21740
type: Gene
subclass of: SO_0000704
RO_0002162: 86664
gene: mobQ
locus tag: H1W68_RS21740
so part of: sequence
location: complement(4247..6229)
location: region:4247-6229:-1
so has part: feature:4247-6229:-1:exon
subclass of: SO_0000010

72446638
type: Gene
SIO_000068: ncbigene

position:4247:-1
position: 4247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6229:-1
position: 6229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4247-6229:-1:exon

H1W68_RS21740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 86664
gene: mobQ
locus tag: H1W68_RS21740
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012209801.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIYHLSMQIISRSKGQSAVAAAAYRSGQKLYDERTDEQKFYARDVQPETMILTPSNAPEWMKDRNRLWNEVEKVEKRKDSQLARELNIALPIELNQDQQKELIQSFAQNEFVQKGMVADIAIHRDDANNPHAHIMLTMRNIDENGFGKKNRDWNADFANAKENNRGYVKNSEGCLSIREQWANYANQALEQAKSKERITHLSHENRGLEVLPTIHLGHVAHDMEKKGKKSDRGQINRERQEYNKVVIDLQTYRLQKEAHAQKIKEKEKQFSFSTDIEKTHIQKAASLLNQKIVSLDDISKRQAELRKMSDRHDPIERHFHVQQQQFLNVSNYYDRVKALEREIKQNEEKVNELKGSLNPFKLKENNMMKRRHLDKISDLESNKANYENSIGSYKESLRFSTEEEFYSRYQEFSQQKENRLHQIKYEKKQIQVETKVLLQAEEAIKMAKIREVSSHYPDLKTAGKHLTYDNALKLEKHVDMAKKTPVTLEVIEKAIKNQQDDLYKLKKDLKIFQTEKDHLDKIKSQVTSLEKTEKELDTLSNSPSEAAKRLVSKKSRQHYEELQHEANHYRDNLKEKGYKGLDDLNKRQGEIRELEQNVIPDIEKNIKVKEHVIETISGIFDAIQQATRSQEQAQQRHQLRRMRSTNINRAKDQGPDFSR
SIO_010081: H1W68_RS21740
subclass of: SO_0000673
so part of: H1W68_RS21740
location: complement(4247..6229)
location: region:4247-6229:-1
so has part: feature:4247-6229:-1:exon

WP_241475661.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4247-6229:-1:exon

H1W68_RS21745
type: Gene
subclass of: SO_0000704
RO_0002162: 86664
locus tag: H1W68_RS21745
so part of: sequence
location: 6606..6917
location: region:6606-6917:1
so has part: feature:6606-6917:1:exon
subclass of: SO_0000010

72446639
type: Gene
SIO_000068: ncbigene

position:6606:1
position: 6606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6917:1
position: 6917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6606-6917:1:exon

H1W68_RS21745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 86664
locus tag: H1W68_RS21745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012209802.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPKKRTDEEILQELEEKIEKMKAKKQQVESRKKEKERKVRTRRLIQVGAIFEKYFEIQSEEEAEKIAKALQAYVGKNKEKILNHDMVVKEKKKAAAEVAVSEE
SIO_010081: H1W68_RS21745
subclass of: SO_0000673
so part of: H1W68_RS21745
location: 6606..6917
location: region:6606-6917:1
so has part: feature:6606-6917:1:exon

WP_241475655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6606-6917:1:exon

H1W68_RS21750
type: Gene
subclass of: SO_0000704
RO_0002162: 86664
locus tag: H1W68_RS21750
so part of: sequence
location: 6937..7350
location: region:6937-7350:1
so has part: feature:6937-7350:1:exon
subclass of: SO_0000010

72446640
type: Gene
SIO_000068: ncbigene

position:6937:1
position: 6937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7350:1
position: 7350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6937-7350:1:exon

H1W68_RS21750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 86664
locus tag: H1W68_RS21750
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019380319.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKCLYCDSENNSIDQACSVCGAPLYTKRPQLKEYVSLEDSALSFQELQRFHTYDLLVLLRLVREERSKSYNLMRTVQKAPEGAEIDKSVIEFGESEYRLYTARMKLIEGLLVDRMGYKPKRVDDKLLAALQHRMESK
SIO_010081: H1W68_RS21750
subclass of: SO_0000673
so part of: H1W68_RS21750
location: 6937..7350
location: region:6937-7350:1
so has part: feature:6937-7350:1:exon

WP_241475656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6937-7350:1:exon

H1W68_RS21755
type: Gene
subclass of: SO_0000704
RO_0002162: 86664
locus tag: H1W68_RS21755
so part of: sequence
location: 7540..8232
location: region:7540-8232:1
so has part: feature:7540-8232:1:exon
subclass of: SO_0000010

72446641
type: Gene
SIO_000068: ncbigene

position:7540:1
position: 7540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8232:1
position: 8232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7540-8232:1:exon

H1W68_RS21755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 86664
locus tag: H1W68_RS21755
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016205421.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rep protein
translation: MKKVSDLQNSLDKAEQKARLRDFEKDHNSFQKAEDLKKSMLEQLKELTGEDYFVGTSKDPFAGEPFNQTMHRNLDLLNQIDYLTQAEGDFLFRIQPYLEFKSNAIIKREDKFKRTKKNPIDLEDDYELVQSATVSDIAEMIGKTRANTSKIMQSLKEKEILLNPEGAGQVIENGRTVSPRTWIVNPYIMICAPRKNKVQLDRLTMRLFQNSLKNLKDQNGKKVKLPTRFF
SIO_010081: H1W68_RS21755
subclass of: SO_0000673
so part of: H1W68_RS21755
location: 7540..8232
location: region:7540-8232:1
so has part: feature:7540-8232:1:exon

WP_138116140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7540-8232:1:exon

H1W68_RS21760
type: Gene
subclass of: SO_0000704
RO_0002162: 86664
locus tag: H1W68_RS21760
so part of: sequence
location: complement(8537..8695)
location: region:8537-8695:-1
so has part: feature:8537-8695:-1:exon
subclass of: SO_0000010

72446642
type: Gene
SIO_000068: ncbigene

position:8537:-1
position: 8537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8695:-1
position: 8695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8537-8695:-1:exon

H1W68_RS21760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 86664
locus tag: H1W68_RS21760
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKFPGSKKEEMKKIHALTFKFSNEKVCEYCYLREMAKLTTIMRIKVMESTKP
SIO_010081: H1W68_RS21760
subclass of: SO_0000673
so part of: H1W68_RS21760
location: complement(8537..8695)
location: region:8537-8695:-1
so has part: feature:8537-8695:-1:exon

WP_241475657.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8537-8695:-1:exon

H1W68_RS21765
type: Gene
subclass of: SO_0000704
RO_0002162: 86664
locus tag: H1W68_RS21765
so part of: sequence
location: complement(8753..9316)
location: region:8753-9316:-1
so has part: feature:8753-9316:-1:exon
subclass of: SO_0000010

72446643
type: Gene
SIO_000068: ncbigene

position:8753:-1
position: 8753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9316:-1
position: 9316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8753-9316:-1:exon

H1W68_RS21765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 86664
locus tag: H1W68_RS21765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016205415.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3967 domain-containing protein
translation: MSNASEYGYFAKDVAADLEVTTSTLRRWSIELEKAGYKFERNEKDQRIYYDRDFKAFRELKKLINNSVVLIDAINAVVSMDVEGLNASQTPSVYREETRLTRQFLEEVLDKKINKAIQQAFEEGRQQGQKEIKEMMKKIEKRSEERDDNLMSVIRSIQEEKEEVKQLIAASQEQTKKTFWQRLFNKI
SIO_010081: H1W68_RS21765
subclass of: SO_0000673
so part of: H1W68_RS21765
location: complement(8753..9316)
location: region:8753-9316:-1
so has part: feature:8753-9316:-1:exon

WP_241475659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8753-9316:-1:exon