Pseudomonas lundensis strain 2T.2.5.2 plasmid pPL-38ph, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Comprehensive characterization of bacterial community isolated from the temporary meltwater ponds of the coastal area of East Antarctica
Submitted (21-OCT-2020) Center of analytical and genetic engineering research, Institute of Microbiology, National Academy of Sciences of Belarus, Kuprevich 2, Minsk 220141, Belarus
Nucleotide sequence updated by submitter
Submitted (24-SEP-2020) Center of analytical and genetic engineering research, Institute of Microbiology, National Academy of Sciences of Belarus, Kuprevich 2, Minsk 220141, Belarus
REFSEQ INFORMATION: The reference sequence is identical to\nCP062157.2.\n\nOn Dec 1, 2020 this sequence version replaced NZ_CP062157.1.\nBacteria and source DNA available from Belarus National Academy of\nSciences, Institute of microbiology, Belarusian collection of\nnon-pathogenic microorganisms.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 24-SEP-2020\nAssembly Method :: Barapost v. 2020-09-21 edition; SPAdes v.\n 3.14.1; Flye v. 2.8-b1674\nAssembly Name :: 2T-2-5-2v4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 125.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 16:14:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,580\nCDSs (total) :: 4,475\nGenes (coding) :: 4,406\nCDSs (with protein) :: 4,406\nGenes (RNA) :: 105\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 76\nncRNAs :: 4\nPseudo Genes (total) :: 69\nCDSs (without protein) :: 69\nPseudo Genes (ambiguous residues) :: 0 of 69\nPseudo Genes (frameshifted) :: 23 of 69\nPseudo Genes (incomplete) :: 56 of 69\nPseudo Genes (internal stop) :: 15 of 69\nPseudo Genes (multiple problems) :: 19 of 69\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Antarctica: Vecherniy district of the Tala Hills oasis, Enderby Land
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017685030.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005745047.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016359324.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010204988.1
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_010567857.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015855.1
COORDINATES: similar to AA sequence:RefSeq:WP_016781330.1
COORDINATES: similar to AA sequence:RefSeq:WP_020798955.1
phage terminase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016781328.1
primosomal replication protein PriB/PriC domain protein
COORDINATES: similar to AA sequence:RefSeq:WP_016781327.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013813815.1
COORDINATES: similar to AA sequence:RefSeq:WP_016781325.1
COORDINATES: similar to AA sequence:RefSeq:WP_016781324.1
COORDINATES: similar to AA sequence:RefSeq:WP_016781323.1
COORDINATES: similar to AA sequence:RefSeq:WP_020296588.1
COORDINATES: similar to AA sequence:RefSeq:WP_008036072.1
COORDINATES: similar to AA sequence:RefSeq:WP_005896802.1
COORDINATES: similar to AA sequence:RefSeq:WP_010449549.1
COORDINATES: similar to AA sequence:RefSeq:WP_019411208.1
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003207638.1
COORDINATES: protein motif:HMM:NF028088.2
COORDINATES: similar to AA sequence:RefSeq:WP_010462349.1
COORDINATES: similar to AA sequence:RefSeq:WP_008048923.1
COORDINATES: similar to AA sequence:RefSeq:WP_019093187.1
COORDINATES: similar to AA sequence:RefSeq:WP_010462344.1
COORDINATES: similar to AA sequence:RefSeq:WP_005896820.1
COORDINATES: similar to AA sequence:RefSeq:WP_015634359.1
COORDINATES: similar to AA sequence:RefSeq:WP_009047533.1
contractile injection system protein, VgrG/Pvc8 family
COORDINATES: similar to AA sequence:RefSeq:WP_017698620.1
COORDINATES: similar to AA sequence:RefSeq:WP_016781306.1
GO:0019835 - cytolysis [Evidence IEA]; GO:0019076 - viral release from host cell [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017698627.1