Vallota speciosa virus, complete genome.
type: Entry
definition: Vallota speciosa virus, complete genome.
sequence version: NC_017977.1
sequence date: 2018-08-13
sequence: sequence
division: VRL
label: NC_017977.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
source: Cyrtanthus elatus virus A
organism: Cyrtanthus elatus virus A
taxonomy: Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus; unclassified Potyvirus.
reference: 1
references: 22569885
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to JQ723475.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000353
sequence length: 9908
topology: linear
so has quality: SO_0000987
location: 1..9908
location: region:1-9908:1
RO_0002162: 861561

NC_017977
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: Complete genome sequences of seven carlavirus and potyvirus isolates from Narcissus and Hippeastrum plants in Australia, and proposals to clarify their naming
author: Wylie, S.J.
author: Jones, M.G.
journal: Arch. Virol.
volume: 157
issue: 8
pages: 1471-1480
year: 2012
pubmed: 22569885

22569885
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (25-MAY-2012) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Wylie, S.J.
author: Jones, M.G.K.
journal: Submitted (28-FEB-2012) Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch University, South Street, Perth, WA 6150, Australia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9908:1
position: 9908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9908:1:source
so part of: sequence
organism: Cyrtanthus elatus virus A
mol type: genomic RNA
isolate: Marijiniup 7
host: Cyrtanthus elatus
country: Australia
collection date: 01-Nov-2011
collected by: S. Wylie

861561
type: Taxonomy
SIO_000068: taxonomy

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 861561
so part of: sequence
location: 1..459
location: region:1-459:1
so has part: feature:1-459:1:region

position:459:1
position: 459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-459:1:region

A325_gp1
type: Gene
subclass of: SO_0000704
RO_0002162: 861561
locus tag: A325_gp1
so part of: sequence
location: 460..9768
location: region:460-9768:1
so has part: feature:460-9768:1:exon
subclass of: SO_0000010

12978859
type: Gene
SIO_000068: ncbigene

position:460:1
position: 460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9768:1
position: 9768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:460-9768:1:exon

A325_gp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 861561
locus tag: A325_gp1
codon start: 1
product: polyprotein
translation: MKFEEVVAAKPLLPVVMGNEVEAHITNASTQVSALVAGRKPAIKKEWRPVKKVISMEETLINKEVEEVIYPRVKFNMKEIKHEEEYDFHFIMGPQLEGDDKGPSDEMLAQQRMDFANSRRAEDEHLSTEKLKYNQAVHEFDPKEQISYGRLKGLRVKNKETLVHNTKVRKPIRSTRAIESLIAFVAKRASRQGFSMDIIERKKRVNKLTFKRIGDSKHLKVMTRHETGRFYCTDLYAGEFFDHALHCMRSVIKHERPTHDDIGPGWSGVVLKSRNLQLSGLYVKDPYFVIRGRFGPDVVDARQPMEWSQVKQIEHYSDDFKNRFWKSFEETFIMLRKSKVHECVRDVPVEKFGQAVALFTQMLVPIFKTTCSQCIKLATNRSVEQIHFDASRKVIADYYEKVKEDVDFSHFITAFELLSGIEKDSQLGLENFSKTNEIVMLAQTSQIKQMKDLNEIMVKRHRISDEEFDKASTIVLELARWFKNRTDSRKAGALETFRNKISAKTHLNMALLCDNQLNVNGVFQWGERGYHAKRLFANFFDEIDESTSYEKYAIRKHIRGERHLAIKNLMVTTNLEKMRESMRGIEENRHQLTQNCVVKIEGNFVYSCCCVTLDDGKPFESRVRMPTKHHLVLGNNLDEKVVKLPERVTNNMFIAKDGYCYIIIFLAILINIQEADAKEYTQMVRDKVIKTLGKWPTARDVATMLVYMRAFYPEIETAELPKILIDHTHKTMHVMDAFGSMSTNYHVLKANTVAQFIQFAYNEIEGEMQNYNVGGDYTVSYDDSDGEFTVEELNSEEHTDVVGGDASTKLEFATHSEKLSNFKVLIGAMFSASKFRSLLMANPYYILFSLLSPTVVIRMYRDGLFDQAINIAMADNMEVGEMMIRLKCLAQTVSMSESLIIQSFAIGSNCESLLEYLPSVRMADRVTNIARMHLEVLIKAIEVDMKLSDSGFVVTTANFMKKKEDLYVQIYDEALCASGLRNRLRLSIYRLKQSKPLHSQIARAKRNVSLDAWKQFTHERLADTRCIAKKVQYHTVGRVTRCYTSICKQIVVYMFNKLYTFLSEIFKVVNLLILVSLLLQIYYLCVRICRERYALKNQVKQMEYANNSKLVLQVYDEFYELNKGCPTKQEFLDHIINTRPELVEFVRMQMIDVEFQHKRKSENDLERIVAVIAMIMMVFDSSRSDAVFKILNKLKAVFGTFNERVQFQSLDDEVNIDKGLTVDFDIVELNTPVAVTFDVTFEDYWRTQLNSNRLCEHYRTTGAFIEYTRSRTEEVVREIAENPVSNNFLIRGPVGSGKSTGFPVALSAKGKVLILEPTRPLTENVTRQLSGAPFFQSVSMCMRGVHEYGSGNITVMTTGYALHYFANNRDQLNKFSFVLLDECHVMDASAMAFYCLCKDMKYVGKILKTSATPPGRETDIDKSQKKIKLLKESSLSFEDFVAAQGTRSNACVISHGANILVYVASYNEVDQLSALLIARGYRVTKIDGRTMKTGGADIEMKGSRDLPHFAVATNIIENGVTLDIDVVVDFGMKVVANLDADLRMVNYSKVGVSFGERVQRLGRVGRIRDGVALRIGHTERGIQEVPEAIATEAALLCFAYGLPIMPHNVVVSALAKCTSQQARVIHSFELPPLFLLELVKEDGSMHPEIYRHLSKYILRDTEIKLLKTSLPNANTSRWFKVKDYRKFGARVALDDECKIPFYVNNVPDKLYEDIWNACVQFKEDVKPARITTACAQKIAYTLQTDSSSIARTIGIIDHLLAEERIKQAHFRSAFSDTVSTSSFTIAGITKYLRSRYMHDHSDENIETLQRVRAQIMEFRNLSVPFSDVEAIRDYGHMSTVLFQSKEDIVKQLQLKEKFDMRTAVHDGLICSAVFIGGLCMIANAFYEGINETVEFQGKRERQKLKFQRERSEKMNRGVFDDCEDNHDNFAKEYLKKKKSKGRSGGSDTKARRFVHMYGFDPQEYSIVKFLDPLTGIVYDQNDFKSTWELSDKIVKDRFDD…
SIO_010081: A325_gp1
subclass of: SO_0000673
so part of: A325_gp1
location: 460..9768
location: region:460-9768:1
so has part: feature:460-9768:1:exon

YP_006383504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:460-9768:1:exon

A325_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 861561
locus tag: A325_gp1
product: P1
SIO_010081: A325_gp1
subclass of: SO_0000673
so part of: A325_gp1
location: 460..1410
location: region:460-1410:1
so has part: feature:460-1410:1:exon

YP_006390067.1
type: Protein
SIO_000068: ncbiprotein

position:1410:1
position: 1410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:460-1410:1:exon

A325_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 861561
locus tag: A325_gp1
product: HC-Pro
SIO_010081: A325_gp1
subclass of: SO_0000673
so part of: A325_gp1
location: 1411..2781
location: region:1411-2781:1
so has part: feature:1411-2781:1:exon

YP_006390068.1
type: Protein
SIO_000068: ncbiprotein

position:1411:1
position: 1411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2781:1
position: 2781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1411-2781:1:exon

A325_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 861561
locus tag: A325_gp1
product: P3
SIO_010081: A325_gp1
subclass of: SO_0000673
so part of: A325_gp1
location: 2782..3927
location: region:2782-3927:1
so has part: feature:2782-3927:1:exon

YP_006390069.1
type: Protein
SIO_000068: ncbiprotein

position:2782:1
position: 2782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3927:1
position: 3927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2782-3927:1:exon

A325_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 861561
locus tag: A325_gp1
product: 6K1
SIO_010081: A325_gp1
subclass of: SO_0000673
so part of: A325_gp1
location: 3928..4083
location: region:3928-4083:1
so has part: feature:3928-4083:1:exon

YP_006390070.1
type: Protein
SIO_000068: ncbiprotein

position:3928:1
position: 3928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4083:1
position: 4083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3928-4083:1:exon

A325_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 861561
locus tag: A325_gp1
product: CI
SIO_010081: A325_gp1
subclass of: SO_0000673
so part of: A325_gp1
location: 4084..5988
location: region:4084-5988:1
so has part: feature:4084-5988:1:exon

YP_006390071.1
type: Protein
SIO_000068: ncbiprotein

position:4084:1
position: 4084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5988:1
position: 5988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4084-5988:1:exon

A325_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 861561
locus tag: A325_gp1
product: 6K2
SIO_010081: A325_gp1
subclass of: SO_0000673
so part of: A325_gp1
location: 5989..6147
location: region:5989-6147:1
so has part: feature:5989-6147:1:exon

YP_006390072.1
type: Protein
SIO_000068: ncbiprotein

position:5989:1
position: 5989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6147:1
position: 6147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5989-6147:1:exon

A325_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 861561
locus tag: A325_gp1
product: VPg
SIO_010081: A325_gp1
subclass of: SO_0000673
so part of: A325_gp1
location: 6148..6705
location: region:6148-6705:1
so has part: feature:6148-6705:1:exon

YP_006390073.1
type: Protein
SIO_000068: ncbiprotein

position:6148:1
position: 6148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6705:1
position: 6705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6148-6705:1:exon

A325_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 861561
locus tag: A325_gp1
product: Nia-Pro
SIO_010081: A325_gp1
subclass of: SO_0000673
so part of: A325_gp1
location: 6706..7428
location: region:6706-7428:1
so has part: feature:6706-7428:1:exon

YP_006390074.1
type: Protein
SIO_000068: ncbiprotein

position:6706:1
position: 6706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7428:1
position: 7428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6706-7428:1:exon

A325_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 861561
locus tag: A325_gp1
product: NIb
SIO_010081: A325_gp1
subclass of: SO_0000673
so part of: A325_gp1
location: 7429..8988
location: region:7429-8988:1
so has part: feature:7429-8988:1:exon

YP_006390075.1
type: Protein
SIO_000068: ncbiprotein

position:7429:1
position: 7429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8988:1
position: 8988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7429-8988:1:exon

A325_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 861561
locus tag: A325_gp1
product: CP
SIO_010081: A325_gp1
subclass of: SO_0000673
so part of: A325_gp1
location: 8989..9765
location: region:8989-9765:1
so has part: feature:8989-9765:1:exon

YP_006390076.1
type: Protein
SIO_000068: ncbiprotein

position:8989:1
position: 8989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9765:1
position: 9765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8989-9765:1:exon

A325_gp2
type: Gene
subclass of: SO_0000704
RO_0002162: 861561
locus tag: A325_gp2
so part of: sequence
location: <3348..3545
location: region:3348-3545:1
so has part: feature:3348-3545:1:exon
subclass of: SO_0000010

13036850
type: Gene
SIO_000068: ncbigene

position:3348:1
position: 3348
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:3545:1
position: 3545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3348-3545:1:exon

A325_gp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 861561
locus tag: A325_gp2
codon start: 1
product: PIPO
translation: RRFVCANLRRSIVRFRVAKQIAVIYLSIKAIKAFTFTNRKSKKKRFARRMETVYTRTFGGHKVYC
SIO_010081: A325_gp2
subclass of: SO_0000673
so part of: A325_gp2
location: <3348..3545
location: region:3348-3545:1
so has part: feature:3348-3545:1:exon

YP_006438198.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3348-3545:1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 861561
so part of: sequence
location: 9769..9908
location: region:9769-9908:1
so has part: feature:9769-9908:1:region

position:9769:1
position: 9769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9769-9908:1:region