Gemmatirosa kalamazoonensis strain KBS708 plasmid 2, complete sequence.
Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatirosa.
Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum
Submitted (23-DEC-2013) Department of Biosystems Engineering & Soil Science, University of Tennessee, 2506 EJ Chapman Drive, Knoxville, TN 37996, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP007130.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: Hierarchical Genome Assembly Process v.\n 2013\nCoverage :: 118\nSequencing Technology :: 454; Illumina; PacBio\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/18/2022 14:48:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,447\nCDSs (total) :: 6,388\nGenes (coding) :: 6,323\nCDSs (with protein) :: 6,323\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 65\nCDSs (without protein) :: 65\nPseudo Genes (ambiguous residues) :: 0 of 65\nPseudo Genes (frameshifted) :: 9 of 65\nPseudo Genes (incomplete) :: 59 of 65\nPseudo Genes (internal stop) :: 0 of 65\nPseudo Genes (multiple problems) :: 3 of 65\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Gemmatirosa kalamazoonensis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013014364.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008387038.1
COORDINATES: similar to AA sequence:RefSeq:WP_013209156.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011003358.1
COORDINATES: similar to AA sequence:RefSeq:WP_013652604.1
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: similar to AA sequence:RefSeq:WP_002638629.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012853854.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: protein motif:HMM:NF024214.2
COORDINATES: protein motif:HMM:NF024488.2
COORDINATES: similar to AA sequence:RefSeq:WP_012314112.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01051.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015735389.1
COORDINATES: similar to AA sequence:RefSeq:WP_019534353.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019382297.1
COORDINATES: similar to AA sequence:RefSeq:WP_013766130.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
LytR C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018618412.1
COORDINATES: protein motif:HMM:TIGR04056.1
COORDINATES: protein motif:HMM:NF019592.2
RagB/SusD family nutrient uptake outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_020148155.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019668274.1
COORDINATES: similar to AA sequence:RefSeq:WP_020529192.1
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: similar to AA sequence:RefSeq:WP_020722596.1
COORDINATES: similar to AA sequence:RefSeq:WP_012121055.1
COORDINATES: similar to AA sequence:RefSeq:WP_020526237.1
COORDINATES: protein motif:HMM:NF019845.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012235953.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012376129.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008099883.1
COORDINATES: protein motif:HMM:NF025616.2
COORDINATES: protein motif:HMM:NF019335.2
TonB-dependent receptor plug domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014264011.1
COORDINATES: similar to AA sequence:RefSeq:WP_014785057.1
COORDINATES: protein motif:HMM:NF019590.2
COORDINATES: similar to AA sequence:RefSeq:WP_019832582.1
GO:0008880 - glucuronate isomerase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020646971.1
glycosyl hydrolase family 28-related protein
COORDINATES: protein motif:HMM:NF012516.2
GO:0004650 - polygalacturonase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007413655.1
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF014376.2
COORDINATES: similar to AA sequence:RefSeq:WP_008447207.1
COORDINATES: protein motif:HMM:NF024834.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015331623.1
family 78 glycoside hydrolase catalytic domain
COORDINATES: similar to AA sequence:RefSeq:WP_006135846.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008586046.1
COORDINATES: protein motif:HMM:NF019607.2
COORDINATES: similar to AA sequence:RefSeq:WP_012927441.1
COORDINATES: protein motif:HMM:NF040028.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368548.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235118.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235119.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020733214.1
COORDINATES: protein motif:HMM:NF013226.2
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007689974.1
COORDINATES: similar to AA sequence:RefSeq:WP_013287906.1
COORDINATES: similar to AA sequence:RefSeq:WP_013177201.1
COORDINATES: similar to AA sequence:RefSeq:WP_013144982.1
COORDINATES: similar to AA sequence:RefSeq:WP_014067270.1
COORDINATES: protein motif:HMM:NF028442.2
COORDINATES: similar to AA sequence:RefSeq:WP_014067692.1
COORDINATES: similar to AA sequence:RefSeq:WP_012375872.1
COORDINATES: protein motif:HMM:TIGR03434.1
COORDINATES: similar to AA sequence:RefSeq:WP_004558435.1
COORDINATES: protein motif:HMM:NF025934.2
GO:0047487 - oligogalacturonide lyase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013572990.1
COORDINATES: similar to AA sequence:RefSeq:WP_011684411.1
COORDINATES: similar to AA sequence:RefSeq:WP_002645534.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012200.0
choice-of-anchor D domain-containing protein
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: protein motif:HMM:NF024248.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF025013.2
COORDINATES: similar to AA sequence:RefSeq:WP_013958837.1
COORDINATES: similar to AA sequence:RefSeq:WP_011523010.1
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025046.2
COORDINATES: protein motif:HMM:NF014567.2
GAF domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_020562754.1
COORDINATES: similar to AA sequence:RefSeq:WP_014162733.1
GO:0016832 - aldehyde-lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011466390.1
COORDINATES: similar to AA sequence:RefSeq:WP_008404852.1
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: similar to AA sequence:RefSeq:WP_012681994.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_020048974.1
COORDINATES: protein motif:HMM:NF018485.2
COORDINATES: protein motif:HMM:NF013736.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012593.2
cation:dicarboxylase symporter family transporter
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_014647476.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190425.1
COORDINATES: protein motif:HMM:TIGR02246.1
COORDINATES: similar to AA sequence:RefSeq:WP_015895204.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004691143.1
LLM class flavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF015649.2
BTAD domain-containing putative transcriptional regulator
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: similar to AA sequence:RefSeq:WP_011683500.1
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: similar to AA sequence:RefSeq:WP_015353388.1
COORDINATES: similar to AA sequence:RefSeq:WP_008836477.1
bifunctional aldolase/short-chain dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008347459.1
GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
S-methyl-5-thioribose-1-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_008347457.1
GO:0046522 - S-methyl-5-thioribose kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006225379.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF019928.2
COORDINATES: protein motif:HMM:NF025774.2
COORDINATES: similar to AA sequence:RefSeq:WP_012934425.1
COORDINATES: similar to AA sequence:RefSeq:WP_010695610.1
COORDINATES: similar to AA sequence:RefSeq:WP_012078820.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013970.2
COORDINATES: similar to AA sequence:RefSeq:WP_013070508.1
COORDINATES: similar to AA sequence:RefSeq:WP_011843973.1
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: protein motif:HMM:NF022750.2
COORDINATES: similar to AA sequence:RefSeq:WP_015158267.1
COORDINATES: similar to AA sequence:RefSeq:WP_015894850.1
COORDINATES: similar to AA sequence:RefSeq:WP_016463853.1
COORDINATES: protein motif:HMM:NF019365.2
COORDINATES: similar to AA sequence:RefSeq:WP_018974290.1
LytTR family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF018305.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF012298.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020722172.1
COORDINATES: similar to AA sequence:RefSeq:WP_013569167.1
GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025702.2
COORDINATES: protein motif:HMM:NF013866.2
COORDINATES: similar to AA sequence:RefSeq:WP_015156230.1
COORDINATES: similar to AA sequence:RefSeq:WP_013573247.1
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF037005.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012632.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018959752.1
COORDINATES: similar to AA sequence:RefSeq:WP_014786072.1
GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: protein motif:HMM:NF024743.2
DUF4097 family beta strand repeat-containing protein
COORDINATES: protein motif:HMM:NF016497.2
COORDINATES: similar to AA sequence:RefSeq:WP_014626100.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020597549.1
COORDINATES: protein motif:HMM:NF023580.2
COORDINATES: protein motif:HMM:NF025887.2
COORDINATES: protein motif:HMM:NF015863.2
PepSY-associated TM helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012682923.1
COORDINATES: protein motif:HMM:NF019334.2
COORDINATES: protein motif:HMM:NF024180.2
CHAT domain-containing tetratricopeptide repeat protein
COORDINATES: protein motif:HMM:NF013594.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017076.2
COORDINATES: protein motif:HMM:NF016430.2
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF012862.2
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009718449.1
COORDINATES: protein motif:HMM:TIGR00027.1
COORDINATES: protein motif:HMM:NF016289.2
COORDINATES: protein motif:HMM:NF021354.2
COORDINATES: similar to AA sequence:RefSeq:WP_018559497.1
COORDINATES: similar to AA sequence:RefSeq:WP_015894995.1
COORDINATES: protein motif:HMM:NF017015.2
COORDINATES: protein motif:HMM:NF038032.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0045203 - integral component of cell outer membrane [Evidence IEA]
GO:0071702 - organic substance transport [Evidence IEA]
SusC/RagA family TonB-linked outer membrane protein
COORDINATES: protein motif:HMM:NF024181.2
SusD/RagB family nutrient-binding outer membrane lipoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_009291390.1
COORDINATES: similar to AA sequence:RefSeq:WP_020716344.1
COORDINATES: similar to AA sequence:RefSeq:WP_017302052.1
COORDINATES: protein motif:HMM:NF012863.2
COORDINATES: protein motif:HMM:NF036516.2
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_020717293.1
COORDINATES: similar to AA sequence:RefSeq:WP_011682228.1
COORDINATES: similar to AA sequence:RefSeq:WP_011686290.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054078.1
COORDINATES: protein motif:HMM:NF012377.2
COORDINATES: protein motif:HMM:NF025861.2
glycoside hydrolase family 97 N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF019225.2
PEP-CTERM sorting domain-containing protein
COORDINATES: protein motif:HMM:NF025006.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: protein motif:HMM:NF027309.2
COORDINATES: similar to AA sequence:RefSeq:WP_000920559.1
COORDINATES: similar to AA sequence:RefSeq:WP_019653315.1
COORDINATES: protein motif:HMM:NF012546.2
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_007664059.1
COORDINATES: similar to AA sequence:RefSeq:WP_009676263.1
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: protein motif:HMM:NF024865.2
COORDINATES: protein motif:HMM:NF025034.2
COORDINATES: protein motif:HMM:NF012387.2
COORDINATES: similar to AA sequence:RefSeq:WP_012682761.1
COORDINATES: similar to AA sequence:RefSeq:WP_013530089.1
COORDINATES: similar to AA sequence:RefSeq:WP_018973862.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016840.2
COORDINATES: protein motif:HMM:NF012355.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: protein motif:HMM:NF025687.2
COORDINATES: similar to AA sequence:RefSeq:WP_020754680.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF022636.2
COORDINATES: protein motif:HMM:NF016107.2
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: similar to AA sequence:RefSeq:WP_015896694.1
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: protein motif:HMM:NF016552.2
COORDINATES: protein motif:HMM:TIGR03433.1
COORDINATES: protein motif:HMM:NF025910.2
PEP-CTERM proteins occur, often in large numbers, in the proteomes of bacteria that also encode an exosortase, a predicted intramembrane cysteine proteinase. The presence of a PEP-CTERM domain at a protein's C-terminus predicts cleavage within the sorting domain, followed by covalent anchoring to some some component of the (usually Gram-negative) cell surface. Many PEP-CTERM proteins exhibit an unusual sequence composition that includes large numbers of potential glycosylation sites. Expression of one such protein has been shown restore the ability of a bacterium to form floc, a type of biofilm; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:NF017935.2
COORDINATES: similar to AA sequence:RefSeq:WP_017747756.1
COORDINATES: similar to AA sequence:RefSeq:WP_007289999.1
COORDINATES: similar to AA sequence:RefSeq:WP_017747758.1
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0008984 - protein-glutamate methylesterase activity [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
chemotaxis-specific protein-glutamate methyltransferase CheB
COORDINATES: similar to AA sequence:RefSeq:WP_015150347.1
protein-glutamate O-methyltransferase CheR
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015204453.1
COORDINATES: similar to AA sequence:RefSeq:WP_011556886.1
COORDINATES: similar to AA sequence:RefSeq:WP_017578699.1
COORDINATES: similar to AA sequence:RefSeq:WP_003243101.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF037660.2
COORDINATES: similar to AA sequence:RefSeq:WP_011652046.1
COORDINATES: similar to AA sequence:RefSeq:WP_012483871.1
COORDINATES: similar to AA sequence:RefSeq:WP_016884105.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011798302.1
COORDINATES: protein motif:HMM:NF024515.2
COORDINATES: similar to AA sequence:RefSeq:WP_008595825.1
COORDINATES: protein motif:HMM:NF026255.2
COORDINATES: similar to AA sequence:RefSeq:WP_018613009.1
COORDINATES: protein motif:HMM:NF015513.2
COORDINATES: protein motif:HMM:NF012961.2
COORDINATES: similar to AA sequence:RefSeq:WP_002637399.1
COORDINATES: similar to AA sequence:RefSeq:WP_020717294.1
COORDINATES: protein motif:HMM:TIGR00474.1
GO:0004125 - L-seryl-tRNASec selenium transferase activity [Evidence IEA]
GO:0016260 - selenocysteine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00475.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0001514 - selenocysteine incorporation [Evidence IEA]; GO:0006414 - translational elongation [Evidence IEA]
selenocysteine-specific translation elongation factor
COORDINATES: similar to AA sequence:RefSeq:WP_017517361.1
GO:0004756 - selenide, water dikinase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_007713937.1
COORDINATES: protein motif:HMM:NF024842.2
COORDINATES: similar to AA sequence:RefSeq:WP_012813769.1
COORDINATES: protein motif:HMM:NF012264.2
COORDINATES: similar to AA sequence:RefSeq:WP_011909866.1
PLP-dependent cysteine synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013111649.1
COORDINATES: similar to AA sequence:RefSeq:WP_018842442.1
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:NF025004.2
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018611135.1
COORDINATES: similar to AA sequence:RefSeq:WP_011522088.1
COORDINATES: protein motif:HMM:NF038403.1
permease prefix domain 1-containing protein
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016197008.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01891.1
COORDINATES: similar to AA sequence:RefSeq:WP_012683519.1
GO:0016836 - hydro-lyase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009577667.1
COORDINATES: similar to AA sequence:RefSeq:WP_012192070.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF037405.2
COORDINATES: protein motif:HMM:NF024487.2
COORDINATES: similar to AA sequence:RefSeq:WP_011689040.1
COORDINATES: protein motif:HMM:NF039587.1
COORDINATES: similar to AA sequence:RefSeq:WP_010916014.1
GO:0004121 - cystathionine beta-lyase activity [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: similar to AA sequence:RefSeq:WP_012870887.1
GO:0050131 - N-methyl-L-amino-acid oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014413949.1
COORDINATES: similar to AA sequence:RefSeq:WP_020721751.1
COORDINATES: protein motif:HMM:NF024883.2
COORDINATES: similar to AA sequence:RefSeq:WP_015247244.1
winged helix DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011985254.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02772.1
GO:0045027 - DNA end binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015436573.1
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: similar to AA sequence:RefSeq:WP_014722258.1
COORDINATES: protein motif:HMM:NF024859.2
COORDINATES: protein motif:HMM:NF012698.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF015679.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015884688.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003894567.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_014400527.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018508259.1
COORDINATES: similar to AA sequence:RefSeq:WP_019989351.1
COORDINATES: similar to AA sequence:RefSeq:WP_014265263.1
COORDINATES: similar to AA sequence:RefSeq:WP_003264517.1
COORDINATES: similar to AA sequence:RefSeq:WP_009856331.1
carbohydrate binding family 9 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008664894.1
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: similar to AA sequence:RefSeq:WP_020719938.1
COORDINATES: protein motif:HMM:NF012906.2
COORDINATES: protein motif:HMM:NF014427.2
COORDINATES: similar to AA sequence:RefSeq:WP_012872222.1
COORDINATES: similar to AA sequence:RefSeq:WP_012974903.1
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: protein motif:HMM:TIGR02293.1
COORDINATES: similar to AA sequence:RefSeq:WP_014561951.1
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: similar to AA sequence:RefSeq:WP_008202362.1
COORDINATES: protein motif:HMM:NF037170.2
COORDINATES: protein motif:HMM:NF015898.2
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: protein motif:HMM:NF012503.2
COORDINATES: similar to AA sequence:RefSeq:WP_011712444.1
COORDINATES: similar to AA sequence:RefSeq:WP_014561568.1
COORDINATES: similar to AA sequence:RefSeq:WP_015327958.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012395828.1
GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
3'(2'),5'-bisphosphate nucleotidase CysQ
COORDINATES: protein motif:HMM:NF003013.0
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014313517.1
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: similar to AA sequence:RefSeq:WP_013959962.1
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_019235503.1
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
amino acid adenylation domain-containing protein
COORDINATES: protein motif:HMM:NF003417.0
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF014698.2
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: similar to AA sequence:RefSeq:WP_013560416.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012318.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025680.2
COORDINATES: protein motif:HMM:TIGR02069.1
GO:0044265 - cellular macromolecule catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014684225.1
COORDINATES: similar to AA sequence:RefSeq:WP_012683517.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_008630537.1
COORDINATES: similar to AA sequence:RefSeq:WP_009801535.1
COORDINATES: similar to AA sequence:RefSeq:WP_007670192.1
COORDINATES: similar to AA sequence:RefSeq:WP_012683520.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397921.1
COORDINATES: protein motif:HMM:NF019265.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010943373.1
COORDINATES: protein motif:HMM:NF013700.2
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: protein motif:HMM:NF024297.2
COORDINATES: similar to AA sequence:RefSeq:WP_015347353.1
COORDINATES: protein motif:HMM:NF012913.2
COORDINATES: protein motif:HMM:NF017868.2
COORDINATES: protein motif:HMM:NF024675.2
COORDINATES: similar to AA sequence:RefSeq:WP_012682700.1
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: similar to AA sequence:RefSeq:WP_020186678.1
COORDINATES: similar to AA sequence:RefSeq:WP_017742202.1
COORDINATES: protein motif:HMM:NF012478.2
FKBP-type peptidyl-prolyl cis-trans isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_009674056.1
COORDINATES: similar to AA sequence:RefSeq:WP_010937745.1
COORDINATES: similar to AA sequence:RefSeq:WP_012525901.1
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563418.1
COORDINATES: similar to AA sequence:RefSeq:WP_013158698.1
COORDINATES: similar to AA sequence:RefSeq:WP_020711401.1
COORDINATES: similar to AA sequence:RefSeq:WP_013158699.1
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: similar to AA sequence:RefSeq:WP_015448823.1
COORDINATES: protein motif:HMM:NF012382.2
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008352882.1
COORDINATES: similar to AA sequence:RefSeq:WP_020715945.1
COORDINATES: similar to AA sequence:RefSeq:WP_014787386.1
COORDINATES: protein motif:HMM:NF014795.2
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014794.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012500160.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019260708.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF028476.2
COORDINATES: similar to AA sequence:RefSeq:WP_006634747.1
COORDINATES: similar to AA sequence:RefSeq:WP_012190475.1
COORDINATES: protein motif:HMM:NF025053.2
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018507763.1
COORDINATES: similar to AA sequence:RefSeq:WP_003209703.1
COORDINATES: protein motif:HMM:NF024934.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: similar to AA sequence:RefSeq:WP_003180150.1
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: similar to AA sequence:RefSeq:WP_012683674.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000066495.1
COORDINATES: similar to AA sequence:RefSeq:WP_020640173.1
COORDINATES: protein motif:HMM:NF025852.2
COORDINATES: protein motif:HMM:NF017280.2
COORDINATES: protein motif:HMM:NF025030.2
COORDINATES: similar to AA sequence:RefSeq:WP_011684389.1
COORDINATES: similar to AA sequence:RefSeq:WP_007414572.1
COORDINATES: similar to AA sequence:RefSeq:WP_019460127.1
COORDINATES: protein motif:HMM:NF022588.2
COORDINATES: similar to AA sequence:RefSeq:WP_015894972.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF012296.2
COORDINATES: similar to AA sequence:RefSeq:WP_011734069.1
COORDINATES: similar to AA sequence:RefSeq:WP_015351198.1
COORDINATES: similar to AA sequence:RefSeq:WP_013766601.1
PEP-CTERM proteins occur, often in large numbers, in the proteomes of bacteria that also encode an exosortase, a predicted intramembrane cysteine proteinase. The presence of a PEP-CTERM domain at a protein's C-terminus predicts cleavage within the sorting domain, followed by covalent anchoring to some some component of the (usually Gram-negative) cell surface. Many PEP-CTERM proteins exhibit an unusual sequence composition that includes large numbers of potential glycosylation sites. Expression of one such protein has been shown restore the ability of a bacterium to form floc, a type of biofilm; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011684064.1
COORDINATES: protein motif:HMM:NF019323.2
GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02073.1
GO:0009274 - peptidoglycan-based cell wall [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_008246453.1
COORDINATES: protein motif:HMM:NF025167.2
COORDINATES: protein motif:HMM:NF019229.2
COORDINATES: similar to AA sequence:RefSeq:WP_014032286.1
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: protein motif:HMM:NF012697.2
COORDINATES: similar to AA sequence:RefSeq:WP_010216100.1
COORDINATES: protein motif:HMM:NF013377.2
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_004041117.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_020537097.1
COORDINATES: similar to AA sequence:RefSeq:WP_020257720.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF015971.2
COORDINATES: similar to AA sequence:RefSeq:WP_015846960.1
COORDINATES: similar to AA sequence:RefSeq:WP_006103397.1
COORDINATES: protein motif:HMM:NF024640.2
COORDINATES: similar to AA sequence:RefSeq:WP_020721592.1
COORDINATES: protein motif:HMM:NF021604.2
COORDINATES: protein motif:HMM:NF016101.2
bifunctional YncE family protein/alkaline phosphatase family protein
PAS domain-containing sensor histidine kinase
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF024953.2
COORDINATES: similar to AA sequence:RefSeq:WP_007909638.1
COORDINATES: similar to AA sequence:RefSeq:WP_015136941.1
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: protein motif:HMM:NF015534.2
Type 1 glutamine amidotransferase-like domain-containing protein
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: protein motif:HMM:NF019581.2
COORDINATES: protein motif:HMM:NF013927.2
GO:0017000 - antibiotic biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020738988.1
COORDINATES: similar to AA sequence:RefSeq:WP_011143054.1
COORDINATES: similar to AA sequence:RefSeq:WP_012682878.1
COORDINATES: similar to AA sequence:RefSeq:WP_006160270.1
COORDINATES: protein motif:HMM:NF014758.2
COORDINATES: similar to AA sequence:RefSeq:WP_013564085.1
COORDINATES: protein motif:HMM:NF018894.2
COORDINATES: similar to AA sequence:RefSeq:WP_003119751.1
GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
type II secretion system major pseudopilin GspG
COORDINATES: similar to AA sequence:RefSeq:WP_011685251.1
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012575.2
COORDINATES: protein motif:HMM:NF019095.2
COORDINATES: similar to AA sequence:RefSeq:WP_015896039.1
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: protein motif:HMM:NF025708.2
COORDINATES: protein motif:HMM:TIGR00225.1
COORDINATES: protein motif:HMM:NF013964.2
HNH endonuclease signature motif containing protein
COORDINATES: protein motif:HMM:NF021425.2
COORDINATES: similar to AA sequence:RefSeq:WP_011529504.1
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: similar to AA sequence:RefSeq:WP_020528734.1
COORDINATES: similar to AA sequence:RefSeq:WP_015814716.1
COORDINATES: protein motif:HMM:NF024701.2
COORDINATES: similar to AA sequence:RefSeq:WP_008438090.1
COORDINATES: similar to AA sequence:RefSeq:WP_013458196.1
COORDINATES: similar to AA sequence:RefSeq:WP_015898425.1
COORDINATES: similar to AA sequence:RefSeq:WP_014785885.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011163859.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_012695281.1
carbon-nitrogen hydrolase family protein
COORDINATES: protein motif:HMM:NF014173.2
COORDINATES: similar to AA sequence:RefSeq:WP_020721875.1
COORDINATES: similar to AA sequence:RefSeq:WP_020710896.1
pilus assembly PilX N-terminal domain-containing protein
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012927876.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018533374.1
COORDINATES: similar to AA sequence:RefSeq:WP_013153817.1
COORDINATES: similar to AA sequence:RefSeq:WP_013901136.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]
bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013014366.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.