Gemmatirosa kalamazoonensis strain KBS708 plasmid 1, complete sequence.
Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatirosa.
Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum
Submitted (23-DEC-2013) Department of Biosystems Engineering & Soil Science, University of Tennessee, 2506 EJ Chapman Drive, Knoxville, TN 37996, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP007129.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: Hierarchical Genome Assembly Process v.\n 2013\nCoverage :: 118\nSequencing Technology :: 454; Illumina; PacBio\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/18/2022 14:48:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,447\nCDSs (total) :: 6,388\nGenes (coding) :: 6,323\nCDSs (with protein) :: 6,323\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 65\nCDSs (without protein) :: 65\nPseudo Genes (ambiguous residues) :: 0 of 65\nPseudo Genes (frameshifted) :: 9 of 65\nPseudo Genes (incomplete) :: 59 of 65\nPseudo Genes (internal stop) :: 0 of 65\nPseudo Genes (multiple problems) :: 3 of 65\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Gemmatirosa kalamazoonensis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014044.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016469967.1
COORDINATES: protein motif:HMM:NF015776.2
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024857.2
COORDINATES: similar to AA sequence:RefSeq:WP_010427219.1
COORDINATES: protein motif:HMM:NF025742.2
COORDINATES: similar to AA sequence:RefSeq:WP_009102828.1
COORDINATES: protein motif:HMM:TIGR02594.1
COORDINATES: protein motif:HMM:NF018755.2
COORDINATES: protein motif:HMM:NF039819.1
COORDINATES: protein motif:HMM:NF024943.2
COORDINATES: protein motif:HMM:NF024661.2
COORDINATES: similar to AA sequence:RefSeq:WP_003596341.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01613.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015172761.1
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: similar to AA sequence:RefSeq:WP_002628969.1
COORDINATES: protein motif:HMM:NF014476.2
COORDINATES: protein motif:HMM:NF012512.2
COORDINATES: protein motif:HMM:TIGR03434.1
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF016213.2
COORDINATES: similar to AA sequence:RefSeq:WP_014040219.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: protein motif:HMM:NF020498.2
COORDINATES: similar to AA sequence:RefSeq:WP_015448726.1
COORDINATES: similar to AA sequence:RefSeq:WP_020708801.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010885.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF017262.2
COORDINATES: protein motif:HMM:NF019599.2
COORDINATES: similar to AA sequence:RefSeq:WP_015895400.1
COORDINATES: similar to AA sequence:RefSeq:WP_008510539.1
COORDINATES: protein motif:HMM:NF025433.2
LssY C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF027232.2
COORDINATES: protein motif:HMM:NF023580.2
COORDINATES: similar to AA sequence:RefSeq:WP_020712255.1
COORDINATES: protein motif:HMM:NF019225.2
PEP-CTERM sorting domain-containing protein
COORDINATES: protein motif:HMM:NF015506.2
COORDINATES: similar to AA sequence:RefSeq:WP_011522088.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011685351.1
COORDINATES: similar to AA sequence:RefSeq:WP_013919761.1
COORDINATES: protein motif:HMM:NF014081.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008101734.1
COORDINATES: similar to AA sequence:RefSeq:WP_012892749.1
COORDINATES: similar to AA sequence:RefSeq:WP_011985369.1
COORDINATES: similar to AA sequence:RefSeq:WP_007913523.1
COORDINATES: protein motif:HMM:NF012257.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
cyclic nucleotide-binding domain-containing protein
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_009280061.1
UBP-type zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011525082.1
COORDINATES: similar to AA sequence:RefSeq:WP_019906716.1
ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_020506332.1
COORDINATES: similar to AA sequence:RefSeq:WP_012870683.1
COORDINATES: similar to AA sequence:RefSeq:WP_012097983.1
COORDINATES: similar to AA sequence:RefSeq:WP_013895380.1
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: protein motif:HMM:TIGR04056.1
GO:0045203 - integral component of cell outer membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0071702 - organic substance transport [Evidence IEA]
SusC/RagA family TonB-linked outer membrane protein
COORDINATES: protein motif:HMM:NF024181.2
SusD/RagB family nutrient-binding outer membrane lipoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_015895346.1
COORDINATES: similar to AA sequence:RefSeq:WP_002629162.1
COORDINATES: similar to AA sequence:RefSeq:WP_012633003.1
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR02777.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF022588.2
COORDINATES: similar to AA sequence:RefSeq:WP_011686294.1
COORDINATES: protein motif:HMM:NF024863.2
COORDINATES: similar to AA sequence:RefSeq:WP_017463049.1
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF040438.1
alpha/beta hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF013866.2
COORDINATES: similar to AA sequence:RefSeq:WP_020720310.1
COORDINATES: protein motif:HMM:NF037749.2
COORDINATES: similar to AA sequence:RefSeq:WP_018973487.1
COORDINATES: similar to AA sequence:RefSeq:WP_014019933.1
COORDINATES: similar to AA sequence:RefSeq:WP_007106336.1
COORDINATES: protein motif:HMM:NF025004.2
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007805818.1
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:NF019334.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF012738.2
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012707.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF015094.2
COORDINATES: similar to AA sequence:RefSeq:WP_011985242.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013958130.1
GO:0008782 - adenosylhomocysteine nucleosidase activity [Evidence IEA]; GO:0008930 - methylthioadenosine nucleosidase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO:0009164 - nucleoside catabolic process [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]
5'-methylthioadenosine/adenosylhomocysteine nucleosidase
COORDINATES: similar to AA sequence:RefSeq:WP_020519514.1
COORDINATES: similar to AA sequence:RefSeq:WP_015245108.1
COORDINATES: protein motif:HMM:NF013346.2
COORDINATES: similar to AA sequence:RefSeq:WP_020721162.1
COORDINATES: similar to AA sequence:RefSeq:WP_007191492.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012873559.1
GO:0015267 - channel activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02595.1
COORDINATES: protein motif:HMM:NF013827.2
rhomboid family intramembrane serine protease
COORDINATES: similar to AA sequence:RefSeq:WP_005001042.1
COORDINATES: similar to AA sequence:RefSeq:WP_014854921.1
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012120078.1
GO:0005948 - acetolactate synthase complex [Evidence IEA]
GO:0003984 - acetolactate synthase activity [Evidence IEA]
biosynthetic-type acetolactate synthase large subunit
COORDINATES: protein motif:HMM:TIGR00119.1
COORDINATES: similar to AA sequence:RefSeq:WP_012256075.1
COORDINATES: similar to AA sequence:RefSeq:WP_010676085.1
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012096532.1
GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013558763.1
GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]
GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA]
3-isopropylmalate dehydratase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013558762.1
3-isopropylmalate dehydratase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012191970.1
GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014808099.1
COORDINATES: similar to AA sequence:RefSeq:WP_020717054.1
COORDINATES: similar to AA sequence:RefSeq:WP_007867755.1
COORDINATES: protein motif:HMM:NF024273.2
COORDINATES: similar to AA sequence:RefSeq:WP_012521340.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: protein motif:HMM:NF016296.2
LytTR family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024248.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF025034.2
COORDINATES: similar to AA sequence:RefSeq:WP_009405390.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016193330.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012842864.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004068.1
COORDINATES: protein motif:HMM:NF025006.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: protein motif:HMM:NF021606.2
COORDINATES: similar to AA sequence:RefSeq:WP_015765897.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018919099.1
COORDINATES: protein motif:HMM:NF024883.2
COORDINATES: similar to AA sequence:RefSeq:WP_015894698.1
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_015458496.1
COORDINATES: protein motif:HMM:NF019592.2
RagB/SusD family nutrient uptake outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_018716672.1
COORDINATES: protein motif:HMM:NF019556.2
COORDINATES: similar to AA sequence:RefSeq:WP_008990518.1
COORDINATES: protein motif:HMM:NF019335.2
TonB-dependent receptor plug domain-containing protein
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF013239.2
COORDINATES: similar to AA sequence:RefSeq:WP_011688860.1
COORDINATES: protein motif:HMM:NF013123.2
DPP IV N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011683560.1
COORDINATES: protein motif:HMM:NF025934.2
COORDINATES: similar to AA sequence:RefSeq:WP_020263196.1
prolyl oligopeptidase family serine peptidase
COORDINATES: protein motif:HMM:NF012387.2
COORDINATES: similar to AA sequence:RefSeq:WP_009284746.1
COORDINATES: similar to AA sequence:RefSeq:WP_017498929.1
COORDINATES: similar to AA sequence:RefSeq:WP_014784986.1
COORDINATES: similar to AA sequence:RefSeq:WP_009287506.1
COORDINATES: similar to AA sequence:RefSeq:WP_009315754.1
COORDINATES: similar to AA sequence:RefSeq:WP_011687015.1
COORDINATES: similar to AA sequence:RefSeq:WP_020508939.1
COORDINATES: similar to AA sequence:RefSeq:WP_003039545.1
COORDINATES: similar to AA sequence:RefSeq:WP_011072770.1
COORDINATES: similar to AA sequence:RefSeq:WP_012874169.1
COORDINATES: similar to AA sequence:RefSeq:WP_015671890.1
COORDINATES: similar to AA sequence:RefSeq:WP_011355493.1
COORDINATES: similar to AA sequence:RefSeq:WP_019301582.1
COORDINATES: similar to AA sequence:RefSeq:WP_020720416.1
COORDINATES: similar to AA sequence:RefSeq:WP_020710996.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011997772.1
COORDINATES: similar to AA sequence:RefSeq:WP_014066165.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008741 - ribulokinase activity [Evidence IEA]
GO:0019569 - L-arabinose catabolic process to xylulose 5-phosphate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008045303.1
COORDINATES: protein motif:HMM:NF012766.2
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0070006 - metalloaminopeptidase activity [Evidence IEA]
aminopeptidase P N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF039587.1
COORDINATES: protein motif:HMM:NF016176.2
COORDINATES: similar to AA sequence:RefSeq:WP_020708266.1
COORDINATES: similar to AA sequence:RefSeq:WP_012950201.1
COORDINATES: similar to AA sequence:RefSeq:WP_020720909.1
COORDINATES: similar to AA sequence:RefSeq:WP_010148026.1
COORDINATES: protein motif:HMM:NF018305.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_012524318.1
COORDINATES: similar to AA sequence:RefSeq:WP_020711272.1
COORDINATES: similar to AA sequence:RefSeq:WP_020651958.1
COORDINATES: similar to AA sequence:RefSeq:WP_004620613.1
glycoside hydrolase family 3 C-terminal domain-containing protein
PAS domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF012955.2
N-acyl homoserine lactonase family protein
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: similar to AA sequence:RefSeq:WP_018184271.1
GO:0038023 - signaling receptor activity [Evidence IEA]
opioid growth factor receptor-related protein
COORDINATES: protein motif:HMM:NF012371.2
COORDINATES: protein motif:HMM:NF013702.2
GO:0016746 - acyltransferase activity [Evidence IEA]
1-acyl-sn-glycerol-3-phosphate acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015104977.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF012790.2
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF016064.2
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014560521.1
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: similar to AA sequence:RefSeq:WP_002646638.1
COORDINATES: similar to AA sequence:RefSeq:WP_012682923.1
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF019351.2
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011971805.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011686335.1
COORDINATES: similar to AA sequence:RefSeq:WP_020700802.1
COORDINATES: similar to AA sequence:RefSeq:WP_011405420.1
COORDINATES: protein motif:HMM:NF016101.2
bifunctional YncE family protein/alkaline phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013012453.1
COORDINATES: protein motif:HMM:NF013592.2
GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011644561.1
COORDINATES: similar to AA sequence:RefSeq:WP_006225322.1
COORDINATES: protein motif:HMM:TIGR04256.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00521
SAM riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF006449.0
COORDINATES: similar to AA sequence:RefSeq:WP_007510773.1
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00657.1
GO:0004072 - aspartate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02779.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
VPLPA-CTERM sorting domain-containing protein
COORDINATES: protein motif:HMM:TIGR02999.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459624.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014372695.1
COORDINATES: similar to AA sequence:RefSeq:WP_012238944.1
COORDINATES: similar to AA sequence:RefSeq:YP_002516630.1
COORDINATES: similar to AA sequence:RefSeq:WP_009896265.1
COORDINATES: similar to AA sequence:RefSeq:WP_007907105.1
COORDINATES: protein motif:HMM:NF014281.2
COORDINATES: protein motif:HMM:NF014017.2
COORDINATES: protein motif:HMM:TIGR02937.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF015649.2
BTAD domain-containing putative transcriptional regulator
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: protein motif:HMM:NF019846.2
COORDINATES: similar to AA sequence:RefSeq:WP_017948913.1
COORDINATES: protein motif:HMM:NF024583.2
GAF domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_020382265.1
COORDINATES: similar to AA sequence:RefSeq:WP_020382266.1
fumarate reductase/succinate dehydrogenase flavoprotein subunit
COORDINATES: protein motif:HMM:NF016150.2
COORDINATES: similar to AA sequence:RefSeq:WP_013014780.1
succinate dehydrogenase/fumarate reductase iron-sulfur subunit
COORDINATES: protein motif:HMM:NF012417.2
PEP-CTERM proteins occur, often in large numbers, in the proteomes of bacteria that also encode an exosortase, a predicted intramembrane cysteine proteinase. The presence of a PEP-CTERM domain at a protein's C-terminus predicts cleavage within the sorting domain, followed by covalent anchoring to some some component of the (usually Gram-negative) cell surface. Many PEP-CTERM proteins exhibit an unusual sequence composition that includes large numbers of potential glycosylation sites. Expression of one such protein has been shown restore the ability of a bacterium to form floc, a type of biofilm; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013568199.1
COORDINATES: similar to AA sequence:RefSeq:WP_012801163.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480011.1
COORDINATES: similar to AA sequence:RefSeq:WP_018642586.1
COORDINATES: protein motif:HMM:NF013050.2
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020561899.1
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_019016741.1
COORDINATES: similar to AA sequence:RefSeq:WP_012926165.1
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: protein motif:HMM:NF025380.2
COORDINATES: protein motif:HMM:NF012381.2
COORDINATES: protein motif:HMM:NF004225.0
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013799.2
ectonucleotide pyrophosphatase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_013080228.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013080227.1
GO:0015572 - N-acetylglucosamine transmembrane transporter activity [Evidence IEA]
N-acetylglucosamine-specific PTS transporter subunit IIBC
COORDINATES: protein motif:HMM:NF037477.2
contact-dependent growth inhibition system immunity protein
COORDINATES: protein motif:HMM:NF016107.2
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016196901.1
GO:0008168 - methyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
carboxy-S-adenosyl-L-methionine synthase CmoA
COORDINATES: protein motif:HMM:NF016303.2
COORDINATES: protein motif:HMM:NF012355.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: similar to AA sequence:RefSeq:WP_018479210.1
COORDINATES: protein motif:HMM:TIGR04247.1
GO:0071941 - nitrogen cycle metabolic process [Evidence IEA]
nitrous oxide reductase family maturation protein NosD
COORDINATES: similar to AA sequence:RefSeq:WP_008287712.1
COORDINATES: similar to AA sequence:RefSeq:WP_014937268.1
GO:0050304 - nitrous-oxide reductase activity [Evidence IEA]
GO:0019333 - denitrification pathway [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00738.1
COORDINATES: similar to AA sequence:RefSeq:WP_019598808.1
COORDINATES: protein motif:HMM:NF022750.2
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: similar to AA sequence:RefSeq:WP_009029943.1
COORDINATES: protein motif:HMM:NF015674.2
COORDINATES: protein motif:HMM:NF021501.2
COORDINATES: protein motif:HMM:NF012791.2
PEP-CTERM proteins occur, often in large numbers, in the proteomes of bacteria that also encode an exosortase, a predicted intramembrane cysteine proteinase. The presence of a PEP-CTERM domain at a protein's C-terminus predicts cleavage within the sorting domain, followed by covalent anchoring to some some component of the (usually Gram-negative) cell surface. Many PEP-CTERM proteins exhibit an unusual sequence composition that includes large numbers of potential glycosylation sites. Expression of one such protein has been shown restore the ability of a bacterium to form floc, a type of biofilm; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010118320.1
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024304.2
pyridoxamine 5'-phosphate oxidase family protein
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025691.2
COORDINATES: similar to AA sequence:RefSeq:WP_020477959.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015679.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024135.2
COORDINATES: similar to AA sequence:RefSeq:WP_016859993.1
COORDINATES: similar to AA sequence:RefSeq:WP_013034454.1
TrkA C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003074221.1
COORDINATES: similar to AA sequence:RefSeq:WP_014854861.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: similar to AA sequence:RefSeq:WP_008174689.1
COORDINATES: similar to AA sequence:RefSeq:WP_003936225.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198401.1
COORDINATES: protein motif:HMM:NF012241.2
COORDINATES: similar to AA sequence:RefSeq:WP_011766379.1
COORDINATES: similar to AA sequence:RefSeq:WP_014150339.1
COORDINATES: similar to AA sequence:RefSeq:WP_011812880.1
COORDINATES: protein motif:HMM:NF014477.2
FeoB-associated Cys-rich membrane protein
COORDINATES: protein motif:HMM:NF016121.2
COORDINATES: similar to AA sequence:RefSeq:WP_005959197.1
RnfABCDGE type electron transport complex subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_014779471.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013974.2
GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]
2-oxoacid:acceptor oxidoreductase family protein
COORDINATES: protein motif:HMM:NF015987.2
COORDINATES: protein motif:HMM:NF014794.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006475427.1
2-oxoacid:acceptor oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: similar to AA sequence:RefSeq:WP_015910486.1
COORDINATES: similar to AA sequence:RefSeq:WP_015352981.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_012681566.1
COORDINATES: similar to AA sequence:RefSeq:WP_019615335.1
COORDINATES: similar to AA sequence:RefSeq:WP_014265193.1
COORDINATES: similar to AA sequence:RefSeq:WP_019639255.1
COORDINATES: similar to AA sequence:RefSeq:WP_004272924.1
glyoxalase/bleomycin resistance/dioxygenase family protein
COORDINATES: protein motif:HMM:NF013736.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013360.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016641 - oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019859524.1
COORDINATES: protein motif:HMM:NF017815.2
transglutaminase-like cysteine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_009133806.1
COORDINATES: similar to AA sequence:RefSeq:WP_006980540.1
COORDINATES: similar to AA sequence:RefSeq:WP_005640072.1
COORDINATES: similar to AA sequence:RefSeq:WP_012191194.1
GO:0008733 - L-arabinose isomerase activity [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF027814.2
COORDINATES: similar to AA sequence:RefSeq:WP_012682336.1
COORDINATES: similar to AA sequence:RefSeq:WP_012844355.1
COORDINATES: protein motif:HMM:NF026255.2
COORDINATES: similar to AA sequence:RefSeq:WP_014216345.1
COORDINATES: similar to AA sequence:RefSeq:WP_010980743.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: similar to AA sequence:RefSeq:WP_007416919.1
COORDINATES: similar to AA sequence:RefSeq:WP_003723180.1
COORDINATES: similar to AA sequence:RefSeq:WP_012843583.1
alpha-glucuronidase family glycosyl hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_011684064.1
GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013769453.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024881.2
COORDINATES: similar to AA sequence:RefSeq:WP_007904895.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013570348.1
COORDINATES: protein motif:HMM:NF024864.2
cupredoxin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012233316.1
COORDINATES: protein motif:HMM:NF012503.2
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020715294.1
COORDINATES: protein motif:HMM:NF023363.2
COORDINATES: similar to AA sequence:RefSeq:WP_014877842.1
COORDINATES: similar to AA sequence:RefSeq:WP_012239376.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563330.1
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010943997.1
COORDINATES: protein motif:HMM:NF017482.2
NFACT RNA binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011689287.1
COORDINATES: similar to AA sequence:RefSeq:WP_020473903.1
COORDINATES: protein motif:HMM:NF033196.2
COORDINATES: similar to AA sequence:RefSeq:WP_012634227.1
COORDINATES: similar to AA sequence:RefSeq:WP_012843205.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689435.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015250122.1
COORDINATES: similar to AA sequence:RefSeq:WP_020722774.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007226174.1
COORDINATES: similar to AA sequence:RefSeq:WP_014265423.1
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021981.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165405.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190364.1
COORDINATES: similar to AA sequence:RefSeq:WP_014005263.1
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF024966.2
COORDINATES: similar to AA sequence:RefSeq:WP_012924454.1
Clp protease N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF019607.2
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: similar to AA sequence:RefSeq:WP_007965493.1
COORDINATES: protein motif:HMM:NF024909.2
COORDINATES: similar to AA sequence:RefSeq:WP_015894912.1
COORDINATES: protein motif:HMM:NF025086.2
COORDINATES: protein motif:HMM:NF016109.2
COORDINATES: similar to AA sequence:RefSeq:WP_009510556.1
COORDINATES: similar to AA sequence:RefSeq:WP_007507863.1
GO:0052699 - ergothioneine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010090272.1
GO:0030745 - dimethylhistidine N-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015305215.1
COORDINATES: similar to AA sequence:RefSeq:WP_011955741.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: protein motif:HMM:NF024870.2
COORDINATES: similar to AA sequence:RefSeq:WP_002011282.1
COORDINATES: similar to AA sequence:RefSeq:WP_003083605.1
COORDINATES: similar to AA sequence:RefSeq:WP_015896654.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694176.1
COORDINATES: protein motif:HMM:NF012383.2
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012240078.1
COORDINATES: protein motif:HMM:NF022443.2
COORDINATES: similar to AA sequence:RefSeq:WP_015895345.1
COORDINATES: similar to AA sequence:RefSeq:WP_011521381.1
COORDINATES: similar to AA sequence:RefSeq:WP_018611495.1
COORDINATES: similar to AA sequence:RefSeq:WP_053111714.1
COORDINATES: protein motif:HMM:NF012546.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020397.2
COORDINATES: similar to AA sequence:RefSeq:WP_012374190.1
COORDINATES: similar to AA sequence:RefSeq:WP_006270867.1
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_020564292.1
COORDINATES: similar to AA sequence:RefSeq:WP_018960233.1
COORDINATES: similar to AA sequence:RefSeq:WP_020738475.1
COORDINATES: similar to AA sequence:RefSeq:WP_011755549.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017935692.1
COORDINATES: protein motif:HMM:NF021525.2
COORDINATES: similar to AA sequence:RefSeq:WP_013377721.1
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: protein motif:HMM:NF037429.2
COORDINATES: similar to AA sequence:RefSeq:WP_017198234.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011380202.1
trimeric intracellular cation channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018042867.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013593.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012234.2
FtsH/Yme1/Tma family ATP-dependent metallopeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_004174214.1
COORDINATES: similar to AA sequence:RefSeq:WP_007510216.1
COORDINATES: protein motif:HMM:NF025887.2
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_010497552.1
COORDINATES: similar to AA sequence:RefSeq:WP_018756223.1
COORDINATES: protein motif:HMM:NF014525.2
COORDINATES: protein motif:HMM:NF025052.2
COORDINATES: similar to AA sequence:RefSeq:WP_016514546.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018280994.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006384441.1
COORDINATES: protein motif:HMM:NF020795.2
COORDINATES: similar to AA sequence:RefSeq:WP_017747065.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014394487.1
COORDINATES: similar to AA sequence:RefSeq:WP_006624758.1
COORDINATES: protein motif:HMM:NF014043.2
COORDINATES: protein motif:HMM:NF016227.2
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:TIGR02574.1
COORDINATES: similar to AA sequence:RefSeq:WP_013706045.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004514645.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006172542.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: protein motif:HMM:NF018574.2
COORDINATES: similar to AA sequence:RefSeq:WP_015894133.1
COORDINATES: similar to AA sequence:RefSeq:WP_018656361.1
COORDINATES: protein motif:HMM:NF019265.2
carboxypeptidase regulatory-like domain-containing protein
COORDINATES: protein motif:HMM:NF017026.2
COORDINATES: similar to AA sequence:RefSeq:WP_011683500.1
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: similar to AA sequence:RefSeq:WP_014740387.1
COORDINATES: similar to AA sequence:RefSeq:WP_007972994.1
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: similar to AA sequence:RefSeq:WP_008829462.1
COORDINATES: protein motif:HMM:NF025879.2
effector binding domain-containing protein
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF020483.2
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: similar to AA sequence:RefSeq:WP_011681952.1
COORDINATES: protein motif:HMM:NF021507.2
phosphodiester glycosidase family protein
COORDINATES: protein motif:HMM:NF019928.2
COORDINATES: similar to AA sequence:RefSeq:WP_012681571.1
COORDINATES: protein motif:HMM:NF015735.2
COORDINATES: similar to AA sequence:RefSeq:WP_015244140.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011687282.1
COORDINATES: protein motif:HMM:NF024375.2
COORDINATES: protein motif:HMM:NF024297.2
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: similar to AA sequence:RefSeq:WP_013378296.1
COORDINATES: similar to AA sequence:RefSeq:WP_002621114.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_002628197.1
COORDINATES: similar to AA sequence:RefSeq:WP_015933536.1
COORDINATES: protein motif:HMM:NF017464.2
COORDINATES: similar to AA sequence:RefSeq:WP_002654735.1
COORDINATES: similar to AA sequence:RefSeq:WP_008098897.1
COORDINATES: similar to AA sequence:RefSeq:WP_011684428.1
homocysteine S-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011684426.1
COORDINATES: similar to AA sequence:RefSeq:WP_011684424.1
COORDINATES: similar to AA sequence:RefSeq:WP_011684423.1
uroporphyrinogen decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008719061.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013618976.1
COORDINATES: protein motif:HMM:NF014850.2
GO:0030246 - carbohydrate binding [Evidence IEA]
malectin domain-containing carbohydrate-binding protein
COORDINATES: protein motif:HMM:NF027452.2
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF019350.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011072441.1
COORDINATES: protein motif:HMM:NF013109.2
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF025769.2
COORDINATES: similar to AA sequence:RefSeq:WP_015820381.1
COORDINATES: protein motif:HMM:NF012337.2
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: protein motif:HMM:NF021456.2
COORDINATES: protein motif:HMM:TIGR03361.1
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_019996844.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03347.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_011682026.1
type VI secretion system baseplate subunit TssF
COORDINATES: protein motif:HMM:TIGR03357.1
type VI secretion system baseplate subunit TssE
COORDINATES: protein motif:HMM:TIGR03363.1
COORDINATES: similar to AA sequence:RefSeq:WP_015895682.1
type VI secretion system accessory protein TagJ
COORDINATES: protein motif:HMM:NF017454.2
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_015895680.1
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015895679.1
type VI secretion system contractile sheath small subunit
COORDINATES: protein motif:HMM:TIGR03353.1
type VI secretion system baseplate subunit TssK
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: protein motif:HMM:NF025605.2
COORDINATES: protein motif:HMM:NF025885.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014397510.1
COORDINATES: similar to AA sequence:RefSeq:WP_008066292.1
aspartate/glutamate racemase family protein
COORDINATES: protein motif:HMM:NF027890.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012373744.1
COORDINATES: similar to AA sequence:RefSeq:WP_018076770.1
COORDINATES: protein motif:HMM:NF024110.2
COORDINATES: similar to AA sequence:RefSeq:WP_006562973.1
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015014211.1
COORDINATES: similar to AA sequence:RefSeq:WP_020712127.1
COORDINATES: protein motif:HMM:TIGR02436.1
COORDINATES: protein motif:HMM:TIGR03349.1
DotU family type IV/VI secretion system protein
COORDINATES: protein motif:HMM:NF018470.2
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: protein motif:HMM:NF015724.2
COORDINATES: protein motif:HMM:NF039835.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_020651724.1
COORDINATES: similar to AA sequence:RefSeq:WP_014440338.1
COORDINATES: similar to AA sequence:RefSeq:WP_016860047.1
COORDINATES: similar to AA sequence:RefSeq:WP_015204246.1
COORDINATES: similar to AA sequence:RefSeq:WP_014267737.1
GO:0008452 - RNA ligase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012121532.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_020736078.1
COORDINATES: protein motif:HMM:NF017239.2
COORDINATES: protein motif:HMM:NF026257.2
COORDINATES: similar to AA sequence:RefSeq:WP_012524648.1
COORDINATES: protein motif:HMM:NF015380.2
COORDINATES: protein motif:HMM:NF016612.2
neutral/alkaline non-lysosomal ceramidase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012120585.1
COORDINATES: similar to AA sequence:RefSeq:WP_014785295.1
COORDINATES: similar to AA sequence:RefSeq:WP_009280718.1
COORDINATES: similar to AA sequence:RefSeq:WP_018479108.1
COORDINATES: similar to AA sequence:RefSeq:WP_009131379.1
COORDINATES: similar to AA sequence:RefSeq:WP_011524023.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0003957 - NAD(P)+ transhydrogenase (B-specific) activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011522173.1
COORDINATES: similar to AA sequence:RefSeq:WP_014393981.1
COORDINATES: similar to AA sequence:RefSeq:WP_011520914.1
COORDINATES: protein motif:HMM:NF025158.2
COORDINATES: similar to AA sequence:RefSeq:WP_011520917.1
COORDINATES: similar to AA sequence:RefSeq:WP_011797734.1
COORDINATES: protein motif:HMM:NF024842.2
COORDINATES: similar to AA sequence:RefSeq:WP_012872787.1
COORDINATES: similar to AA sequence:RefSeq:WP_005602521.1
ATP-dependent Clp protease proteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015896039.1
COORDINATES: similar to AA sequence:RefSeq:WP_014785885.1
COORDINATES: similar to AA sequence:RefSeq:WP_012646188.1