Gemmatirosa kalamazoonensis strain KBS708 extrachromosomal.
Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatirosa.
Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum
Submitted (23-DEC-2013) Department of Biosystems Engineering & Soil Science, University of Tennessee, 2506 EJ Chapman Drive, Knoxville, TN 37996, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP007127.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: Hierarchical Genome Assembly Process v.\n 2013\nCoverage :: 118\nSequencing Technology :: 454; Illumina; PacBio\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/18/2022 14:48:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,447\nCDSs (total) :: 6,388\nGenes (coding) :: 6,323\nCDSs (with protein) :: 6,323\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 65\nCDSs (without protein) :: 65\nPseudo Genes (ambiguous residues) :: 0 of 65\nPseudo Genes (frameshifted) :: 9 of 65\nPseudo Genes (incomplete) :: 59 of 65\nPseudo Genes (internal stop) :: 0 of 65\nPseudo Genes (multiple problems) :: 3 of 65\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Gemmatirosa kalamazoonensis
extrachromosomal phage-like extrachromosal element
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024835.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
integrase arm-type DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF040238.1
COORDINATES: protein motif:HMM:NF024139.2