Sphingobium indicum B90A plasmid pSRL3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.
Genome sequence of Sphingobium indicum B90A, a hexachlorocyclohexane-degrading bacterium
Complete Genome Sequence of Sphingobium indicum B90A
Submitted (28-OCT-2015) Department of Zoology, University of Delhi, Room no. 115, Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi, Delhi 110007, India
Submitted (17-MAY-2012) Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi, Delhi 110007, India
REFSEQ INFORMATION: The reference sequence is identical to\nCP013073.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. unspecified\nGenome Coverage :: 397x\nSequencing Technology :: SMRT\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 02:59:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,833\nCDSs (total) :: 3,772\nGenes (coding) :: 3,710\nCDSs (with protein) :: 3,710\nGenes (RNA) :: 61\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 20 of 62\nPseudo Genes (incomplete) :: 46 of 62\nPseudo Genes (internal stop) :: 5 of 62\nPseudo Genes (multiple problems) :: 8 of 62\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008832586.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013041578.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554518.1
COORDINATES: similar to AA sequence:RefSeq:WP_008831324.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011950672.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007683474.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683476.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503755.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007685988.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007685989.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007685991.1
COORDINATES: similar to AA sequence:RefSeq:WP_007685992.1
COORDINATES: similar to AA sequence:RefSeq:WP_007685993.1
COORDINATES: similar to AA sequence:RefSeq:WP_007685994.1
COORDINATES: protein motif:HMM:NF039236.1
COORDINATES: similar to AA sequence:RefSeq:WP_007685998.1
COORDINATES: similar to AA sequence:RefSeq:WP_013041683.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686007.1
chlorohydroquinone/hydroquinone 1,2-dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_013041682.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686010.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686013.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035740.1
2,5-dichlorohydroquinone reductive dechlorinase
COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
IS6-like element IS6100 family transposase
COORDINATES: protein motif:HMM:NF025605.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007686174.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686172.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007686170.1
COORDINATES: similar to AA sequence:RefSeq:WP_018075411.1
GO:0004620 - phospholipase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007686165.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449240.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_007686162.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686160.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213319.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686157.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686155.1
COORDINATES: similar to AA sequence:RefSeq:WP_013038680.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017501681.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686150.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007686149.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512303.1