Sphingobium indicum B90A plasmid pSRL2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.
Genome sequence of Sphingobium indicum B90A, a hexachlorocyclohexane-degrading bacterium
Complete Genome Sequence of Sphingobium indicum B90A
Submitted (28-OCT-2015) Department of Zoology, University of Delhi, Room no. 115, Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi, Delhi 110007, India
Submitted (17-MAY-2012) Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi, Delhi 110007, India
REFSEQ INFORMATION: The reference sequence is identical to\nCP013072.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. unspecified\nGenome Coverage :: 397x\nSequencing Technology :: SMRT\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 02:59:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,833\nCDSs (total) :: 3,772\nGenes (coding) :: 3,710\nCDSs (with protein) :: 3,710\nGenes (RNA) :: 61\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 20 of 62\nPseudo Genes (incomplete) :: 46 of 62\nPseudo Genes (internal stop) :: 5 of 62\nPseudo Genes (multiple problems) :: 8 of 62\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_020819636.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013053601.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053605.1
COORDINATES: similar to AA sequence:RefSeq:WP_017182407.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053609.1
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007684482.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830025.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053613.1
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020819628.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_020819627.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819626.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053618.1
COORDINATES: similar to AA sequence:RefSeq:WP_007684472.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020819624.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819623.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013053621.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819622.1
TadE/TadG family type IV pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_007684467.1
COORDINATES: similar to AA sequence:RefSeq:WP_007684466.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819620.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053625.1
COORDINATES: similar to AA sequence:RefSeq:WP_007684463.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020819617.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053628.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053629.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688400.1
pilus assembly protein N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020819613.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819612.1
GO:0003868 - 4-hydroxyphenylpyruvate dioxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007684454.1
GO:0004505 - phenylalanine 4-monooxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007684453.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053635.1
GO:0016746 - acyltransferase activity [Evidence IEA]
acyl-[ACP]--phospholipid O-acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007684451.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053637.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007684449.1
COORDINATES: similar to AA sequence:RefSeq:WP_007684448.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007684447.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012301.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF012722.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
histidine kinase dimerization/phospho-acceptor domain-containing protein
COORDINATES: protein motif:HMM:NF024818.2
COORDINATES: similar to AA sequence:RefSeq:WP_007684441.1
COORDINATES: similar to AA sequence:RefSeq:WP_007684438.1
COORDINATES: similar to AA sequence:RefSeq:WP_007684437.1
PepSY-associated TM helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013053645.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053646.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819599.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_013849201.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053649.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013849205.1
3'(2'),5'-bisphosphate nucleotidase CysQ
COORDINATES: similar to AA sequence:RefSeq:WP_009823652.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
sulfate adenylyltransferase subunit CysN
COORDINATES: similar to AA sequence:RefSeq:WP_013053652.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD
COORDINATES: similar to AA sequence:RefSeq:WP_006949793.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053654.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053655.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007682473.1
outer membrane protein transport protein
COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element IS6100 family transposase
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_020821233.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020821234.1
COORDINATES: similar to AA sequence:RefSeq:WP_020821235.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020821236.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054099.1
cyclopropane-fatty-acyl-phospholipid synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013054100.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054101.1
COORDINATES: similar to AA sequence:RefSeq:WP_020821240.1
COORDINATES: similar to AA sequence:RefSeq:WP_020821241.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020821242.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013054104.1
COORDINATES: similar to AA sequence:RefSeq:WP_020821244.1
quinoprotein dehydrogenase-associated SoxYZ-like carrier
COORDINATES: similar to AA sequence:RefSeq:WP_020821245.1
quinoprotein relay system zinc metallohydrolase 1
COORDINATES: similar to AA sequence:RefSeq:WP_013054106.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054107.1
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013054108.1
PQQ-dependent catabolism-associated beta-propeller protein
COORDINATES: similar to AA sequence:RefSeq:WP_007684526.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013054109.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013054110.1
PQQ-dependent dehydrogenase, methanol/ethanol family
COORDINATES: similar to AA sequence:RefSeq:WP_007684520.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819647.1
COORDINATES: similar to AA sequence:RefSeq:WP_007684517.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819645.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020819644.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054114.1
COORDINATES: similar to AA sequence:RefSeq:WP_007684512.1
FIST N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013054116.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183708.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054118.1
COORDINATES: similar to AA sequence:RefSeq:WP_007684506.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054119.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819638.1
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007684500.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054123.1