Cytobacillus gottheilii strain 1839 plasmid p_unnamed, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Cytobacillus.
The first data on the complete genome of the tetrodotoxin-producing bacterium
Submitted (09-MAR-2021) Russian Academy of Sciences, A.V. Zhirmunsky National Scientific Center of Marine Biology, Palchevskogo 17, Vladivostok, Primorskiy Kray 690041, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP071710.1.\nBacteria and source DNA available from Collection of Marine\nHeterotrophic Bacteria, A.V. Zhirmunsky National Scientific Centre\nof Marine Biology, Far Eastern Branch of the Russian Academy of\nSciences.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: FEB-2020\nAssembly Method :: SPAdes v. 3.7.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 40.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/07/2023 05:11:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,528\nCDSs (total) :: 4,409\nGenes (coding) :: 4,372\nCDSs (with protein) :: 4,372\nGenes (RNA) :: 119\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 5\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 14 of 37\nPseudo Genes (incomplete) :: 20 of 37\nPseudo Genes (internal stop) :: 11 of 37\nPseudo Genes (multiple problems) :: 6 of 37\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Russia: Vostok Bay of the Peter the Great Bay
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013630.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015615674.1
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF019509.2
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016095076.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009335584.1
COORDINATES: protein motif:HMM:NF020438.2
COORDINATES: similar to AA sequence:RefSeq:WP_014097066.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084239.1
COORDINATES: similar to AA sequence:RefSeq:WP_012961192.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003726066.1
COORDINATES: protein motif:HMM:NF020291.2
primase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025424.2
COORDINATES: protein motif:HMM:NF025642.2
COORDINATES: protein motif:HMM:NF022744.2
COORDINATES: similar to AA sequence:RefSeq:WP_003214528.1
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: protein motif:HMM:NF037161.2
COORDINATES: similar to AA sequence:RefSeq:WP_012008613.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF024544.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF019450.2
S-layer homology domain-containing protein
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: protein motif:HMM:NF040179.1
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF025081.2