Achromobacter xylosoxidans strain FDAARGOS_1091 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (11-JAN-2021) Institute for Genome Sciences, University of Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite 619, Baltimore, MD 21201, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP068212.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8\nGenome Coverage :: 394.35x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/28/2022 12:51:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,447\nCDSs (total) :: 6,374\nGenes (coding) :: 6,323\nCDSs (with protein) :: 6,323\nGenes (RNA) :: 73\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 51\nCDSs (without protein) :: 51\nPseudo Genes (ambiguous residues) :: 0 of 51\nPseudo Genes (frameshifted) :: 15 of 51\nPseudo Genes (incomplete) :: 37 of 51\nPseudo Genes (internal stop) :: 5 of 51\nPseudo Genes (multiple problems) :: 6 of 51\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007905211.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019585.2
COORDINATES: similar to AA sequence:RefSeq:WP_000016535.1
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_000634474.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611467.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_005253921.1