Achromobacter xylosoxidans strain FDAARGOS_1091 plasmid unnamed, complete sequence.
type: Entry
definition: Achromobacter xylosoxidans strain FDAARGOS_1091 plasmid unnamed, complete sequence.
sequence version: NZ_CP068212.1
sequence date: 2022-09-28
sequence: sequence
division: CON
label: NZ_CP068212.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN16357260
keyword: RefSeq
source: Achromobacter xylosoxidans
organism: Achromobacter xylosoxidans
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP068212.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8\nGenome Coverage :: 394.35x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/28/2022 12:51:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,447\nCDSs (total) :: 6,374\nGenes (coding) :: 6,323\nCDSs (with protein) :: 6,323\nGenes (RNA) :: 73\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 51\nCDSs (without protein) :: 51\nPseudo Genes (ambiguous residues) :: 0 of 51\nPseudo Genes (frameshifted) :: 15 of 51\nPseudo Genes (incomplete) :: 37 of 51\nPseudo Genes (internal stop) :: 5 of 51\nPseudo Genes (multiple problems) :: 6 of 51\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 6362
topology: circular
so has quality: SO_0000988
location: 1..6362
location: region:1-6362:1
RO_0002162: 85698

NZ_CP068212
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN16357260
type: BioSample
SIO_000068: biosample

1
title: FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
author: Sproer, C.
author: Gronow, S.
author: Severitt, S.
author: Schroder, I.
author: Tallon, L.
author: Sadzewicz, L.
author: Zhao, X.
author: Boylan, J.
author: Ott, S.
author: Bowen, H.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Lowell, S.
author: Myers, T.
author: Yan, Y.
author: Sichtig, H.
journal: Unpublished

2
title: Direct Submission
author: Sproer, C.
author: Gronow, S.
author: Severitt, S.
author: Schroder, I.
author: Tallon, L.
author: Sadzewicz, L.
author: Zhao, X.
author: Boylan, J.
author: Ott, S.
author: Bowen, H.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Lowell, S.
author: Myers, T.
author: Yan, Y.
author: Sichtig, H.
journal: Submitted (11-JAN-2021) Institute for Genome Sciences, University of Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite 619, Baltimore, MD 21201, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6362:1
position: 6362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6362:1:source
so part of: sequence
organism: Achromobacter xylosoxidans
mol type: genomic DNA
strain: FDAARGOS_1091
culture collection: DSM:26051
plasmid: unnamed
country: Germany: Braunschweig
collected by: DSMZ

85698
type: Taxonomy
SIO_000068: taxonomy

I6I48_RS32190
type: Gene
subclass of: SO_0000704
RO_0002162: 85698
locus tag: I6I48_RS32190
old locus tag: I6I48_32185
so part of: sequence
location: complement(join(6212..6362,1..620))
location: region:1-6362:-1
so has part: feature:1-620:-1:exon
so has part: feature:6212-6362:-1:exon
subclass of: SO_0000010

75279187
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6362:-1
position: 6362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-620:-1:exon

position:620:-1
position: 620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6212-6362:-1:exon

position:6212:-1
position: 6212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

I6I48_RS32190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 85698
locus tag: I6I48_RS32190
old locus tag: I6I48_32185
EC number: 1.14.11.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007905211.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 2OG-Fe(II) oxygenase
translation: MIIDNKTFNQKNLNLLLNNELDYIIIKNFVDQDLCNNLCEKILNDDVKGYINAPSIGRIGMAFYEAENKKDLIEKYFSSVDHNIQTLRNKCYPLASPIDILRCRLDEVWEAGSMIERIMGKKMFVGLARVVKPEITFLAHHDIFEKDAPESFRAKSLISQIACNVYLQMPKNGGELMLWEKEISASEFDEMRGESYGIPVEDLGEPTHIIKPEIGDLILFNSRKMHAISPGDSCPRFSLSCFIGYRGNHQPLSVWS
SIO_010081: I6I48_RS32190
subclass of: SO_0000673
so part of: I6I48_RS32190
location: complement(join(6212..6362,1..620))
location: region:1-6362:-1
so has part: feature:1-620:-1:exon
so has part: feature:6212-6362:-1:exon

WP_201954070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-620:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6212-6362:-1:exon

I6I48_RS32195
type: Gene
subclass of: SO_0000704
RO_0002162: 85698
locus tag: I6I48_RS32195
old locus tag: I6I48_32190
so part of: sequence
location: complement(643..1281)
location: region:643-1281:-1
so has part: feature:643-1281:-1:exon
subclass of: SO_0000010

75279188
type: Gene
SIO_000068: ncbigene

position:643:-1
position: 643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1281:-1
position: 1281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:643-1281:-1:exon

I6I48_RS32195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 85698
locus tag: I6I48_RS32195
old locus tag: I6I48_32190
inference: COORDINATES: protein motif:HMM:NF019585.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTIRLYYTHNNLELATKVLSTIYDENKELYKIEVEETIFHPKGGGQDQDIGFINDYPIIDVEMDGAKFYYYLTNELEVGQTVKFRIDSATRTLNSRRHSLGHVIGYILEKKMWIPIKASHYPDDCKVVFKRTERSLDDIEISDLTREVENILSEDYEKSIYYQEQKRVVSFGGKVTYMCGGTHVDKLSEIGDFSITKTKIKKDNLTVSYSIN
SIO_010081: I6I48_RS32195
subclass of: SO_0000673
so part of: I6I48_RS32195
location: complement(643..1281)
location: region:643-1281:-1
so has part: feature:643-1281:-1:exon

WP_201954067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:643-1281:-1:exon

I6I48_RS32200
type: Gene
subclass of: SO_0000704
RO_0002162: 85698
locus tag: I6I48_RS32200
old locus tag: I6I48_32195
so part of: sequence
location: 2537..2947
location: region:2537-2947:1
so has part: feature:2537-2947:1:exon
subclass of: SO_0000010

75279189
type: Gene
SIO_000068: ncbigene

position:2537:1
position: 2537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2947:1
position: 2947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2537-2947:1:exon

I6I48_RS32200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 85698
locus tag: I6I48_RS32200
old locus tag: I6I48_32195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000016535.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family plasmid mobilization relaxosome protein
translation: MSGHEQQESKQGKAVRERTFKVRLSESEYQFLDSNNPYGSIAKLLRQAAVEKATKIHNSKAEENQKIKAIKVVESSYSKTERALILELGRIGNNVNQIAKAVNTDIAGTGAFDKVKLLHLLISIDQQLRELRPDDR
SIO_010081: I6I48_RS32200
subclass of: SO_0000673
so part of: I6I48_RS32200
location: 2537..2947
location: region:2537-2947:1
so has part: feature:2537-2947:1:exon

WP_201954064.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2537-2947:1:exon

I6I48_RS32205
type: Gene
subclass of: SO_0000704
RO_0002162: 85698
locus tag: I6I48_RS32205
old locus tag: I6I48_32200
so part of: sequence
location: 2937..4751
location: region:2937-4751:1
so has part: feature:2937-4751:1:exon
subclass of: SO_0000010

75279190
type: Gene
SIO_000068: ncbigene

position:2937:1
position: 2937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4751:1
position: 4751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2937-4751:1:exon

I6I48_RS32205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 85698
locus tag: I6I48_RS32205
old locus tag: I6I48_32200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000634474.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein
translation: MIVDFFRHGSGLSKGCLDYLLGEDREREHAQVLGGDVELTAQLIDSSPFAKKYTSGCLSFYEHDLSDQDKQKIMQNFEECLFPGLDKDQYQILWVQHQDKVNQDTGETRLELNFVIPNVELSTGKRLQPFYAPVDLDRVDLFKQITNTEHSLYDPDDPEHRQLFLNKKNLPKDIKDFKEQLHQRVYRAVANGEVADRQELVQWLESNQINVTRQVKNSISIENPYEGAKRPIRLEGEIYEQGFRATGEYRQEVQQRIEEYRGTTSERYRTNVTDYQRQLEHKSQYHSDRYPTVGRENSPKHSTQRPNGREAIEPLSKLASIEIEPFNAIKRANTEPRTASPESSRTEKTYHFEYGTDFSSSYFAYSDFLAWSHRQKQVQRSKDTQYRDQRETVESRSPKQIRGQSEYQYVQESIEQQATPMYSDQQECRGMAERLHDSNGILNDDRIRNTIIENHRRTTATVTATTSAIAEATASFRHNANQDYPSLVGSIKDNRERSAKLTASTEIISHNAEAISRSRTQYGKLYRADQWQSSRDEPDYSRQRRSSGENLNHTAFSLVRSSQSAAEFARNVKDIEKNIVQIKELQKKIEKPKSKQDRGMDFGM
SIO_010081: I6I48_RS32205
subclass of: SO_0000673
so part of: I6I48_RS32205
location: 2937..4751
location: region:2937-4751:1
so has part: feature:2937-4751:1:exon

WP_201954061.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2937-4751:1:exon

I6I48_RS32210
type: Gene
subclass of: SO_0000704
RO_0002162: 85698
locus tag: I6I48_RS32210
old locus tag: I6I48_32205
pseudo: true
so part of: sequence
location: complement(4881..>5333)
location: region:4881-5333:-1
so has part: feature:4881-5333:-1:exon
subclass of: SO_0000010

75279191
type: Gene
SIO_000068: ncbigene

position:4881:-1
position: 4881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5333:-1
position: 5333
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4881-5333:-1:exon

I6I48_RS32210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 85698
locus tag: I6I48_RS32210
old locus tag: I6I48_32205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611467.1
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DDE-type integrase/transposase/recombinase
SIO_010081: I6I48_RS32210
subclass of: SO_0000673
so part of: I6I48_RS32210
location: complement(4881..>5333)
location: region:4881-5333:-1
so has part: feature:4881-5333:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4881-5333:-1:exon

I6I48_RS32215
type: Gene
subclass of: SO_0000704
RO_0002162: 85698
locus tag: I6I48_RS32215
old locus tag: I6I48_32210
so part of: sequence
location: complement(5549..6202)
location: region:5549-6202:-1
so has part: feature:5549-6202:-1:exon
subclass of: SO_0000010

75279192
type: Gene
SIO_000068: ncbigene

position:5549:-1
position: 5549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6202:-1
position: 6202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5549-6202:-1:exon

I6I48_RS32215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 85698
locus tag: I6I48_RS32215
old locus tag: I6I48_32210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005253921.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysE family translocator
translation: MFYLQEFLLLATVHFLAVVAPGPDFAVVVQQSVSWGRKIGAITALGIGAGISVHVLYTILGFGLLIQTNELVFNAVKIISALYLIYLGLSLIRSNLKKVDPAKNEQTVEFLNDQQVPSAKSAFLKGFITNATNPKATIFFLGIFTTVVHQSTPLNIQFLYGIWMCFVNAAWFIVVAYLFTTQKVRNAFLQKKKWFEIFMGLILILLAIRLLISFNFS
SIO_010081: I6I48_RS32215
subclass of: SO_0000673
so part of: I6I48_RS32215
location: complement(5549..6202)
location: region:5549-6202:-1
so has part: feature:5549-6202:-1:exon

WP_201954058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5549-6202:-1:exon