Rothia nasimurium strain E1706032 plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia.
Discoveried a novel pandrugs-resistant Rothia nasimurium including m5C RNA methylation with ability of crossing the blood-brain barrier and analysed its whole genome sequence
Submitted (16-JUN-2020) Technology Research and Promotion Department, Animal Disease Prevention and Control Center in Shandong Province of China, Huaicun Street, Jinan City, Shandong Province 250022, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP056081.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT link v. 5.0.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 388.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 11:03:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,298\nCDSs (total) :: 2,233\nGenes (coding) :: 2,209\nCDSs (with protein) :: 2,209\nGenes (RNA) :: 65\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 24\nCDSs (without protein) :: 24\nPseudo Genes (ambiguous residues) :: 0 of 24\nPseudo Genes (frameshifted) :: 4 of 24\nPseudo Genes (incomplete) :: 18 of 24\nPseudo Genes (internal stop) :: 2 of 24\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
China: Jining city duck farm, ShanDong province
COORDINATES: protein motif:HMM:NF012371.2
GO:0016787 - hydrolase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003939268.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007000770.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004005906.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
helix-turn-helix transcriptional regulator
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017831573.1
COORDINATES: protein motif:HMM:NF014661.2
COORDINATES: protein motif:HMM:NF025027.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF036700.2
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: protein motif:HMM:NF017102.2
GO:0004040 - amidase activity [Evidence IEA]; GO:0042834 - peptidoglycan binding [Evidence IEA]