Molothrus ater isolate BHLD 08-10-18 breed brown headed cowbird chromosome 37, BPBGC_Mater_1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Molothrus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM046320.1.\nAssembly name: BPBGC_Mater_1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2022/10/11. The original whole-genome shotgun project\nhas the accession JAAQZI000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Date :: OCT-2019\nAssembly Method :: Canu v. OCT-2019\nAssembly Name :: BPBGC_Mater_1.1\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio Sequel II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_012460135.2-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/22/2023\n##Genome-Annotation-Data-END##
zinc finger protein 271-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 271-like
zinc finger protein 436-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 436-like, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
zinc finger protein 436-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700802; Derived by automated computational analysis using gene prediction method: Gnomon.
small nuclear ribonucleoprotein polypeptide A; Derived by automated computational analysis using gene prediction method: Gnomon.
small nuclear ribonucleoprotein polypeptide A, transcript variant X1
small nuclear ribonucleoprotein polypeptide A, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100 Proteins
uncharacterized LOC118700791; Derived by automated computational analysis using gene prediction method: Gnomon.
histone H3-like centromeric protein A; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins
NADH-ubiquinone oxidoreductase chain 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
zinc finger protein 850-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 458 Proteins
cyclin-A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
zinc finger protein OZF-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 232 Proteins
zinc finger protein 239-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 63 Proteins
zinc finger protein 239-like, transcript variant X1
zinc finger protein 239-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 215 Proteins
zinc finger protein 239-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 64 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 510 Proteins
uncharacterized LOC118700803; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700821; Derived by automated computational analysis using gene prediction method: Gnomon.
adhesion G protein-coupled receptor L1; Derived by automated computational analysis using gene prediction method: Gnomon.
sterile alpha motif domain-containing protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sterile alpha motif domain-containing protein 1-like
fas-binding factor 1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
acrosin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
ER membrane protein complex subunit 10; Derived by automated computational analysis using gene prediction method: Gnomon.
ER membrane protein complex subunit 10, transcript variant X3
ER membrane protein complex subunit 10, transcript variant X1
ER membrane protein complex subunit 10, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
ER membrane protein complex subunit 10 isoform X3
ER membrane protein complex subunit 10 isoform X1
ER membrane protein complex subunit 10 isoform X2
XPA binding protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
protein PET100 homolog, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
protein PET100 homolog, mitochondrial, transcript variant X2
protein PET100 homolog, mitochondrial, transcript variant X1
protein PET100 homolog, mitochondrial isoform X2
protein PET100 homolog, mitochondrial isoform X1
Purkinje cell protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.