Molothrus ater isolate BHLD 08-10-18 breed brown headed cowbird chromosome 36, BPBGC_Mater_1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Molothrus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM046319.1.\nAssembly name: BPBGC_Mater_1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2022/10/11. The original whole-genome shotgun project\nhas the accession JAAQZI000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Date :: OCT-2019\nAssembly Method :: Canu v. OCT-2019\nAssembly Name :: BPBGC_Mater_1.1\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio Sequel II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_012460135.2-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/22/2023\n##Genome-Annotation-Data-END##
bromodomain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
bromodomain containing 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
bromodomain containing 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon.
bromodomain-containing protein 4 isoform X1
bromodomain-containing protein 4 isoform X2
epoxide hydrolase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
calmodulin regulated spectrin associated protein family member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
calmodulin regulated spectrin associated protein family member 3
calmodulin-regulated spectrin-associated protein 3
eukaryotic translation initiation factor 3 subunit G-like; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 3 subunit G-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
DNA (cytosine-5)-methyltransferase 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA (cytosine-5)-methyltransferase 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
mucolipin TRP cation channel 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
zinc finger protein 658B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC129047070; Derived by automated computational analysis using gene prediction method: Gnomon.
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4; Derived by automated computational analysis using gene prediction method: Gnomon.
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
RAS protein activator like 3; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 850-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mucolipin-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
eukaryotic translation initiation factor 3 subunit G; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 3 subunit G, transcript variant X3
eukaryotic translation initiation factor 3 subunit G, transcript variant X5
eukaryotic translation initiation factor 3 subunit G, transcript variant X2
eukaryotic translation initiation factor 3 subunit G, transcript variant X4
eukaryotic translation initiation factor 3 subunit G, transcript variant X1
eukaryotic translation initiation factor 3 subunit G
peter pan homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
calcium voltage-gated channel subunit alpha1 A; Derived by automated computational analysis using gene prediction method: Gnomon.
calcium voltage-gated channel subunit alpha1 A
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: voltage-dependent P/Q-type calcium channel subunit alpha-1A
proline-, glutamic acid- and leucine-rich protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
proline-, glutamic acid- and leucine-rich protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
uncharacterized LOC118697457; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118697457, transcript variant X1
uncharacterized LOC118697457, transcript variant X4
uncharacterized LOC118697457, transcript variant X6
uncharacterized LOC118697457, transcript variant X5
uncharacterized LOC118697457, transcript variant X7
uncharacterized LOC118697457, transcript variant X2
uncharacterized LOC118697457, transcript variant X3
voltage-dependent P/Q-type calcium channel subunit alpha-1A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
voltage-dependent P/Q-type calcium channel subunit alpha-1A-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: voltage-dependent P/Q-type calcium channel subunit alpha-1A-like
basic proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
nucleus accumbens associated 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: nucleus accumbens-associated protein 1
tRNA methyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
tRNA (guanine(26)-N(2))-dimethyltransferase
mannosidase alpha class 2B member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
WD repeat domain 83 opposite strand; Derived by automated computational analysis using gene prediction method: Gnomon.
WD repeat domain 83; Derived by automated computational analysis using gene prediction method: Gnomon.
deoxyhypusine synthase; Derived by automated computational analysis using gene prediction method: Gnomon.
F-box and WD repeat domain containing 9; Derived by automated computational analysis using gene prediction method: Gnomon.
transportin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
telomerase RNA component interacting RNase; Derived by automated computational analysis using gene prediction method: Gnomon.
telomerase RNA component interacting RNase
guided entry of tail-anchored proteins factor 3, ATPase; Derived by automated computational analysis using gene prediction method: Gnomon.
guided entry of tail-anchored proteins factor 3, ATPase
bestrophin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
KRI1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 1 subunit mu 2; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 1 subunit mu 2
solute carrier family 44 member 2; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 44 member 2, transcript variant X3
solute carrier family 44 member 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
choline transporter-like protein 2 isoform X3
choline transporter-like protein 2 isoform X1
solute carrier family 44 member 2, transcript variant X4
solute carrier family 44 member 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
choline transporter-like protein 2 isoform X4
choline transporter-like protein 2 isoform X2
interleukin enhancer binding factor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
interleukin enhancer binding factor 3, transcript variant X1
interleukin enhancer binding factor 3, transcript variant X2
interleukin enhancer binding factor 3, transcript variant X3
interleukin enhancer binding factor 3, transcript variant X4
interleukin enhancer-binding factor 3 isoform X1
interleukin enhancer-binding factor 3 isoform X2
interleukin enhancer-binding factor 3 isoform X3
interleukin enhancer-binding factor 3 isoform X4
uncharacterized LOC129047068; Derived by automated computational analysis using gene prediction method: Gnomon.
beta-1,3-galactosyltransferase 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
queuine tRNA-ribosyltransferase catalytic subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
queuine tRNA-ribosyltransferase catalytic subunit 1
dynamin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like; Derived by automated computational analysis using gene prediction method: Gnomon.
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X1
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X2
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X1
uncharacterized protein LOC118697448 isoform X2
coactivator associated arginine methyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
coactivator associated arginine methyltransferase 1
histone-arginine methyltransferase CARM1
Yip1 domain family member 2; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphodiesterase 4A; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
LOW QUALITY PROTEIN: cAMP-specific 3',5'-cyclic phosphodiesterase 4A
uncharacterized LOC118697430; Derived by automated computational analysis using gene prediction method: Gnomon.
ELAV like RNA binding protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
ELAV like RNA binding protein 3, transcript variant X3
ELAV like RNA binding protein 3, transcript variant X2
ELAV like RNA binding protein 3, transcript variant X5
ELAV like RNA binding protein 3, transcript variant X1
ELAV like RNA binding protein 3, transcript variant X6
ELAV like RNA binding protein 3, transcript variant X4
zinc finger protein 653; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 653, transcript variant X2
zinc finger protein 653, transcript variant X1
zinc finger protein 653, transcript variant X3
ECSIT signaling integrator; Derived by automated computational analysis using gene prediction method: Gnomon.
evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial
calponin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
elongation factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
transcription elongation factor 1 homolog
acid phosphatase 5, tartrate resistant; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
tartrate-resistant acid phosphatase type 5
nuclear factor I X; Derived by automated computational analysis using gene prediction method: Gnomon.
nuclear factor I X, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
nuclear factor I X, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins
nuclear factor I X, transcript variant X4
nuclear factor I X, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
GADD45G interacting protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
growth arrest and DNA damage-inducible proteins-interacting protein 1
RAD23 homolog A, nucleotide excision repair protein; Derived by automated computational analysis using gene prediction method: Gnomon.
RAD23 homolog A, nucleotide excision repair protein
UV excision repair protein RAD23 homolog A
calreticulin; Derived by automated computational analysis using gene prediction method: Gnomon.
phenylalanyl-tRNA synthetase subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
phenylalanyl-tRNA synthetase subunit alpha
phenylalanine--tRNA ligase alpha subunit
synaptonemal complex central element protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
synaptonemal complex central element protein 2
glutaryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Gnomon.
glutaryl-CoA dehydrogenase, transcript variant X2
glutaryl-CoA dehydrogenase, transcript variant X1
glutaryl-CoA dehydrogenase, mitochondrial
microtubule associated serine/threonine kinase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule associated serine/threonine kinase 1
microtubule-associated serine/threonine-protein kinase 1
ribonuclease H2 subunit A; Derived by automated computational analysis using gene prediction method: Gnomon.
hook microtubule tethering protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
cell division cycle 37, HSP90 cochaperone; Derived by automated computational analysis using gene prediction method: Gnomon.
cell division cycle 37, HSP90 cochaperone
tyrosine kinase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
non-receptor tyrosine-protein kinase TYK2
ribonucleoprotein, PTB binding 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ribonucleoprotein, PTB binding 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
ribonucleoprotein, PTB binding 1, transcript variant X3
ribonucleoprotein, PTB binding 1, transcript variant X2
ribonucleoprotein PTB-binding 1 isoform X1
ribonucleoprotein PTB-binding 1 isoform X3
ribonucleoprotein PTB-binding 1 isoform X2
ferredoxin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
intercellular adhesion molecule 5; Derived by automated computational analysis using gene prediction method: Gnomon.
intercellular adhesion molecule 5, transcript variant X2
intercellular adhesion molecule 5, transcript variant X1
intercellular adhesion molecule 5 isoform X2
intercellular adhesion molecule 5 isoform X1
intercellular adhesion molecule 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Gnomon.
sphingosine-1-phosphate receptor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins
patatin like phospholipase domain containing 6; Derived by automated computational analysis using gene prediction method: Gnomon.
patatin like phospholipase domain containing 6, transcript variant X1
patatin like phospholipase domain containing 6, transcript variant X2
patatin-like phospholipase domain-containing protein 6 isoform X1
patatin-like phospholipase domain-containing protein 6 isoform X2
ATPase 13A1; Derived by automated computational analysis using gene prediction method: Gnomon.
endoplasmic reticulum transmembrane helix translocase
coiled-coil-helix-coiled-coil-helix domain containing 5; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil-helix-coiled-coil-helix domain containing 5
coiled-coil-helix-coiled-coil-helix domain-containing protein 5
LIM homeobox transcription factor 1-beta-like; Derived by automated computational analysis using gene prediction method: Gnomon.
LIM homeobox transcription factor 1-beta-like
hepatic lectin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
peptidylprolyl cis/trans isomerase, NIMA-interacting 1; Derived by automated computational analysis using gene prediction method: Gnomon.
peptidylprolyl cis/trans isomerase, NIMA-interacting 1
peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
olfactomedin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047069; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047066; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047067; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047062; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047063; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047063, transcript variant X1
uncharacterized LOC129047063, transcript variant X2
uncharacterized LOC129047064; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047065; Derived by automated computational analysis using gene prediction method: Gnomon.