Molothrus ater isolate BHLD 08-10-18 breed brown headed cowbird chromosome 33, BPBGC_Mater_1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Molothrus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM046316.1.\nAssembly name: BPBGC_Mater_1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2022/10/11. The original whole-genome shotgun project\nhas the accession JAAQZI000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Date :: OCT-2019\nAssembly Method :: Canu v. OCT-2019\nAssembly Name :: BPBGC_Mater_1.1\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio Sequel II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_012460135.2-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/22/2023\n##Genome-Annotation-Data-END##
uncharacterized LOC129047047; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
zinc finger protein 501-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
class II histocompatibility antigen, B-L beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class II histocompatibility antigen, B-L beta chain-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: class II histocompatibility antigen, B-L beta chain-like
zinc finger protein OZF-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein OZF-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 201 Proteins
maestro heat-like repeat-containing protein family member 6; Derived by automated computational analysis using gene prediction method: Gnomon.
maestro heat-like repeat-containing protein family member 6
uncharacterized LOC129047045; Derived by automated computational analysis using gene prediction method: Gnomon.
class II histocompatibility antigen, B-L beta chain-like, transcript variant X2
class II histocompatibility antigen, B-L beta chain-like, transcript variant X1
zinc finger and SCAN domain-containing protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and SCAN domain-containing protein 2-like
uncharacterized LOC118700959; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700968; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 391-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
LOW QUALITY PROTEIN: zinc finger protein 391-like
uncharacterized LOC118700969; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 220 Proteins
uncharacterized LOC129047044; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 279 Proteins
uncharacterized LOC118700973; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 79-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700763; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047046; Derived by automated computational analysis using gene prediction method: Gnomon.
H-2 class II histocompatibility antigen, I-E beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
zinc finger protein 135-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047042; Derived by automated computational analysis using gene prediction method: Gnomon.
class I histocompatibility antigen, F10 alpha chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X3
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 149 Proteins
class I histocompatibility antigen, F10 alpha chain-like isoform X3
class I histocompatibility antigen, F10 alpha chain-like isoform X1
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X4
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X2
class I histocompatibility antigen, F10 alpha chain-like isoform X4
class I histocompatibility antigen, F10 alpha chain-like isoform X2
flotillin-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047043; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047043, transcript variant X2
uncharacterized LOC129047043, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 166 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 162 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 156 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 173 Proteins
flotillin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
tubulin beta chain; Derived by automated computational analysis using gene prediction method: Gnomon.
neuroblast differentiation-associated protein AHNAK-like; Derived by automated computational analysis using gene prediction method: Gnomon.
neuroblast differentiation-associated protein AHNAK-like
ribonuclease Y-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700753; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 218 Proteins
zinc finger protein 345-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97 Proteins
serine/threonine-protein kinase PAK 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase PAK 3-like
uncharacterized LOC118700759; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: serine/threonine-protein kinase PAK 3-like
uncharacterized LOC118700773; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700773, transcript variant X1
uncharacterized LOC118700773, transcript variant X2
uncharacterized LOC118700758; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins
uncharacterized LOC118700785; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700785, transcript variant X2
uncharacterized LOC118700785, transcript variant X1
zinc finger protein 660-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 660-like
zinc finger protein 239-like, transcript variant X3
zinc finger protein 239-like, transcript variant X4
zinc finger protein 239-like, transcript variant X2
zinc finger protein 239-like, transcript variant X1
gastrula zinc finger protein XlCGF49.1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
gastrula zinc finger protein XlCGF49.1-like
zinc finger protein 850-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700749; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 172 Proteins
uncharacterized LOC118700786; Derived by automated computational analysis using gene prediction method: Gnomon.
hydroperoxide isomerase ALOXE3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
N-acetylmuramoyl-L-alanine amidase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047048; Derived by automated computational analysis using gene prediction method: Gnomon.