Molothrus ater isolate BHLD 08-10-18 breed brown headed cowbird chromosome 32, BPBGC_Mater_1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Molothrus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM046315.1.\nAssembly name: BPBGC_Mater_1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2022/10/11. The original whole-genome shotgun project\nhas the accession JAAQZI000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Date :: OCT-2019\nAssembly Method :: Canu v. OCT-2019\nAssembly Name :: BPBGC_Mater_1.1\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio Sequel II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_012460135.2-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/22/2023\n##Genome-Annotation-Data-END##
nematocyst expressed protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
otoferlin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
interferon-induced very large GTPase 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
interferon-induced very large GTPase 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
uncharacterized LOC129047038; Derived by automated computational analysis using gene prediction method: Gnomon.
selenoprotein I; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
ethanolaminephosphotransferase 1 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
ethanolaminephosphotransferase 1 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
sterile alpha motif domain-containing protein 10-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sterile alpha motif domain-containing protein 10-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: sterile alpha motif domain-containing protein 10-like
trifunctional enzyme subunit beta, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
trifunctional enzyme subunit beta, mitochondrial-like, transcript variant X1
trifunctional enzyme subunit beta, mitochondrial-like, transcript variant X3
trifunctional enzyme subunit beta, mitochondrial-like, transcript variant X2
trifunctional enzyme subunit beta, mitochondrial-like, transcript variant X4
trifunctional enzyme subunit beta, mitochondrial-like
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha
trifunctional enzyme subunit alpha, mitochondrial
GRB2 associated regulator of MAPK1 subtype 2; Derived by automated computational analysis using gene prediction method: Gnomon.
GRB2 associated regulator of MAPK1 subtype 2
GRB2-associated and regulator of MAPK protein 2
RAB10, member RAS oncogene family; Derived by automated computational analysis using gene prediction method: Gnomon.
kinesin family member 3C; Derived by automated computational analysis using gene prediction method: Gnomon.
ASXL transcriptional regulator 2; Derived by automated computational analysis using gene prediction method: Gnomon.
dystrobrevin beta; Derived by automated computational analysis using gene prediction method: Gnomon.
dystrobrevin beta, transcript variant X3
dystrobrevin beta, transcript variant X1
dystrobrevin beta, transcript variant X4
dystrobrevin beta, transcript variant X5
dystrobrevin beta, transcript variant X6
dystrobrevin beta, transcript variant X2
DNA methyltransferase 3 alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA methyltransferase 3 alpha, transcript variant X1
DNA methyltransferase 3 alpha, transcript variant X3
DNA methyltransferase 3 alpha, transcript variant X4
DNA methyltransferase 3 alpha, transcript variant X2
DNA (cytosine-5)-methyltransferase 3A isoform X1
DNA (cytosine-5)-methyltransferase 3A isoform X2
dihydropyrimidinase like 5; Derived by automated computational analysis using gene prediction method: Gnomon.
dihydropyrimidinase like 5, transcript variant X1
dihydropyrimidinase like 5, transcript variant X2
dihydropyrimidinase like 5, transcript variant X3
dihydropyrimidinase-related protein 5 isoform X2
dihydropyrimidinase-related protein 5 isoform X1
microtubule associated protein RP/EB family member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule associated protein RP/EB family member 3, transcript variant X4
microtubule associated protein RP/EB family member 3, transcript variant X2
microtubule associated protein RP/EB family member 3, transcript variant X1
microtubule associated protein RP/EB family member 3, transcript variant X3
microtubule-associated protein RP/EB family member 3 isoform X1
microtubule-associated protein RP/EB family member 3 isoform X2
microtubule-associated protein RP/EB family member 3 isoform X3
U1 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00003
Derived by automated computational analysis using gene prediction method: cmsearch.
all-trans retinoic acid induced differentiation factor; Derived by automated computational analysis using gene prediction method: Gnomon.
all-trans retinoic acid induced differentiation factor, transcript variant X4
all-trans retinoic acid induced differentiation factor, transcript variant X2
all-trans retinoic acid induced differentiation factor, transcript variant X1
all-trans retinoic acid-induced differentiation factor isoform X4
all-trans retinoic acid-induced differentiation factor isoform X2
all-trans retinoic acid-induced differentiation factor isoform X1
all-trans retinoic acid induced differentiation factor, transcript variant X3
all-trans retinoic acid-induced differentiation factor isoform X3
solute carrier family 5 member 6; Derived by automated computational analysis using gene prediction method: Gnomon.
sodium-dependent multivitamin transporter
prolactin regulatory element binding; Derived by automated computational analysis using gene prediction method: Gnomon.
prolactin regulatory element binding, transcript variant X1
prolactin regulatory element binding, transcript variant X2
prolactin regulatory element-binding protein isoform X1
prolactin regulatory element-binding protein isoform X2
cell growth regulator with EF-hand domain 1; Derived by automated computational analysis using gene prediction method: Gnomon.
cell growth regulator with EF-hand domain 1
cell growth regulator with EF hand domain protein 1
ketohexokinase; Derived by automated computational analysis using gene prediction method: Gnomon.
elastin microfibril interfacer 1; Derived by automated computational analysis using gene prediction method: Gnomon.
oligosaccharyltransferase complex subunit 4, non-catalytic; Derived by automated computational analysis using gene prediction method: Gnomon.
oligosaccharyltransferase complex subunit 4, non-catalytic, transcript variant X1
oligosaccharyltransferase complex subunit 4, non-catalytic, transcript variant X2
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4
AGBL carboxypeptidase 5; Derived by automated computational analysis using gene prediction method: Gnomon.
AGBL carboxypeptidase 5, transcript variant X1
cytosolic carboxypeptidase-like protein 5
AGBL carboxypeptidase 5, transcript variant X2
transmembrane protein 214; Derived by automated computational analysis using gene prediction method: Gnomon.
basic proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase; Derived by automated computational analysis using gene prediction method: Gnomon.
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase, transcript variant X2
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase, transcript variant X1
mitochondrial inner membrane protein MPV17; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial inner membrane protein MPV17, transcript variant X2
mitochondrial inner membrane protein MPV17, transcript variant X1
urocortin; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif containing 54; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins
DnaJ heat shock protein family (Hsp40) member C5 gamma; Derived by automated computational analysis using gene prediction method: Gnomon.
DnaJ heat shock protein family (Hsp40) member C5 gamma
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
uridine-cytidine kinase-like 1; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 30 member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
probable proton-coupled zinc antiporter SLC30A3
general transcription factor IIIC subunit 2; Derived by automated computational analysis using gene prediction method: Gnomon.
general transcription factor IIIC subunit 2, transcript variant X2
general transcription factor IIIC subunit 2, transcript variant X1
general transcription factor 3C polypeptide 2 isoform X2
general transcription factor 3C polypeptide 2 isoform X1
eukaryotic translation initiation factor 2B subunit delta; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 2B subunit delta, transcript variant X2
eukaryotic translation initiation factor 2B subunit delta, transcript variant X1
eukaryotic translation initiation factor 2B subunit delta, transcript variant X3
translation initiation factor eIF-2B subunit delta isoform X3
translation initiation factor eIF-2B subunit delta isoform X2
translation initiation factor eIF-2B subunit delta isoform X1
sorting nexin 17; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 513; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 513, transcript variant X3
zinc finger protein 513, transcript variant X2
zinc finger protein 513, transcript variant X1
E3 ubiquitin-protein ligase RNF19B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase RNF19B-like, transcript variant X1
E3 ubiquitin-protein ligase RNF19B-like, transcript variant X3
E3 ubiquitin-protein ligase RNF19B-like, transcript variant X2
E3 ubiquitin-protein ligase RNF19B-like isoform X1
E3 ubiquitin-protein ligase RNF19B-like isoform X2
uncharacterized LOC129047039; Derived by automated computational analysis using gene prediction method: Gnomon.
protein phosphatase, Mg2+/Mn2+ dependent 1G; Derived by automated computational analysis using gene prediction method: Gnomon.
protein phosphatase, Mg2+/Mn2+ dependent 1G
nuclear receptor binding protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
nuclear receptor binding protein 1, transcript variant X1
nuclear receptor binding protein 1, transcript variant X2
nuclear receptor-binding protein isoform X1
nuclear receptor-binding protein isoform X2
keratinocyte associated protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
keratinocyte associated protein 3, transcript variant X1
keratinocyte associated protein 3, transcript variant X2
intraflagellar transport 172; Derived by automated computational analysis using gene prediction method: Gnomon.
intraflagellar transport 172, transcript variant X2
intraflagellar transport 172, transcript variant X1
intraflagellar transport protein 172 homolog isoform X2
intraflagellar transport protein 172 homolog isoform X1
low density lipoprotein receptor adapter protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
low density lipoprotein receptor adapter protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
fibronectin type III domain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
fibronectin type III domain containing 4
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: fibronectin type III domain-containing protein 4
zinc finger protein 512; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 512, transcript variant X2
zinc finger protein 512, transcript variant X1
GPN-loop GTPase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
GPN-loop GTPase 1, transcript variant X1
GPN-loop GTPase 1, transcript variant X2
uncharacterized LOC118700663; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700655; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700655, transcript variant X2
uncharacterized LOC118700655, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uncharacterized LOC118700606; Derived by automated computational analysis using gene prediction method: Gnomon.
scavenger receptor class A member 5; Derived by automated computational analysis using gene prediction method: Gnomon.
PDZ binding kinase; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
lymphokine-activated killer T-cell-originated protein kinase
coiled-coil domain containing 25; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain containing 25, transcript variant X1
coiled-coil domain containing 25, transcript variant X5
coiled-coil domain containing 25, transcript variant X6
coiled-coil domain containing 25, transcript variant X3
coiled-coil domain containing 25, transcript variant X4
coiled-coil domain containing 25, transcript variant X2
coiled-coil domain-containing protein 25 isoform X1
coiled-coil domain-containing protein 25 isoform X5
coiled-coil domain-containing protein 25 isoform X6
coiled-coil domain-containing protein 25 isoform X3
coiled-coil domain-containing protein 25 isoform X4
coiled-coil domain-containing protein 25 isoform X2
clusterin; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 35 member F6; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
LOW QUALITY PROTEIN: solute carrier family 35 member F6
potassium two pore domain channel subfamily K member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
potassium two pore domain channel subfamily K member 3
fibrinogen-like protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
stathmin 4; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif containing 35; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif containing 35, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
tripartite motif containing 35, transcript variant X1
E3 ubiquitin-protein ligase TRIM35 isoform X2
E3 ubiquitin-protein ligase TRIM35 isoform X1
dynein regulatory complex subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: dynein regulatory complex protein 1
protein tyrosine kinase 2 beta; Derived by automated computational analysis using gene prediction method: Gnomon.
protein tyrosine kinase 2 beta, transcript variant X2
protein tyrosine kinase 2 beta, transcript variant X1
protein-tyrosine kinase 2-beta isoform X1
protein tyrosine kinase 2 beta, transcript variant X3
protein-tyrosine kinase 2-beta isoform X2
protein tyrosine kinase 2 beta, transcript variant X4
protein-tyrosine kinase 2-beta isoform X3