Molothrus ater isolate BHLD 08-10-18 breed brown headed cowbird chromosome 31, BPBGC_Mater_1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Molothrus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM046314.1.\nAssembly name: BPBGC_Mater_1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2022/10/11. The original whole-genome shotgun project\nhas the accession JAAQZI000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Date :: OCT-2019\nAssembly Method :: Canu v. OCT-2019\nAssembly Name :: BPBGC_Mater_1.1\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio Sequel II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_012460135.2-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/22/2023\n##Genome-Annotation-Data-END##
zinc finger protein 271-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
olfactory receptor 14J1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 75 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 883-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 883-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins
serine/threonine-protein kinase pim-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase pim-1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
olfactory receptor 14C36-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
zinc finger protein 420-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 Proteins
18S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF01960
Derived by automated computational analysis using gene prediction method: cmsearch.
5.8S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00002
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
28S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF02543
uncharacterized LOC129047037; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700581; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
collagen alpha-1(I) chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700582; Derived by automated computational analysis using gene prediction method: Gnomon.
synaptonemal complex protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
synaptonemal complex protein 1-like, transcript variant X7
synaptonemal complex protein 1-like, transcript variant X8
synaptonemal complex protein 1-like, transcript variant X1
synaptonemal complex protein 1-like, transcript variant X3
synaptonemal complex protein 1-like, transcript variant X2
synaptonemal complex protein 1-like, transcript variant X4
synaptonemal complex protein 1-like, transcript variant X5
synaptonemal complex protein 1-like, transcript variant X9
synaptonemal complex protein 1-like, transcript variant X10
synaptonemal complex protein 1-like, transcript variant X6
synaptonemal complex protein 1-like isoform X1
synaptonemal complex protein 1-like isoform X3
synaptonemal complex protein 1-like isoform X2
synaptonemal complex protein 1-like isoform X4
synaptonemal complex protein 1-like isoform X5
synaptonemal complex protein 1-like isoform X7
synaptonemal complex protein 1-like isoform X6
synaptonemal complex protein 1-like isoform X8
synaptonemal complex protein 1-like, transcript variant X13
synaptonemal complex protein 1-like, transcript variant X11
synaptonemal complex protein 1-like, transcript variant X12
zinc finger protein 501-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins
synaptonemal complex protein 1-like, transcript variant X14
synaptonemal complex protein 1-like, transcript variant X15
synaptonemal complex protein 1-like, transcript variant X16
synaptonemal complex protein 1-like isoform X10
synaptonemal complex protein 1-like isoform X11
synaptonemal complex protein 1-like isoform X14
synaptonemal complex protein 1-like isoform X12
synaptonemal complex protein 1-like isoform X15
synaptonemal complex protein 1-like isoform X9
synaptonemal complex protein 1-like isoform X13
translation initiation factor IF-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700575; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700575, transcript variant X6
uncharacterized LOC118700575, transcript variant X2
uncharacterized LOC118700575, transcript variant X1
uncharacterized LOC118700575, transcript variant X5
uncharacterized LOC118700575, transcript variant X3
uncharacterized LOC118700575, transcript variant X4
uncharacterized LOC118700574; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700574, transcript variant X1
uncharacterized LOC118700574, transcript variant X3
uncharacterized LOC118700574, transcript variant X2
nucleoporin NUP35-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins
uncharacterized LOC118700556; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700565; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein LOC118700566 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
uncharacterized LOC118700580; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700578; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118700578, transcript variant X1
uncharacterized LOC118700578, transcript variant X2
uncharacterized LOC118700578, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins