Molothrus ater isolate BHLD 08-10-18 breed brown headed cowbird chromosome W, BPBGC_Mater_1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Molothrus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM022870.2.\n\nOn Mar 24, 2023 this sequence version replaced NC_050510.1.\nAssembly name: BPBGC_Mater_1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2022/10/11. The original whole-genome shotgun project\nhas the accession JAAQZI000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Date :: OCT-2019\nAssembly Method :: Canu v. OCT-2019\nAssembly Name :: BPBGC_Mater_1.1\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio Sequel II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_012460135.2-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/22/2023\n##Genome-Annotation-Data-END##
guanine nucleotide-binding protein G(q) subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
guanine nucleotide-binding protein G(q) subunit alpha
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701515; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701506; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
uncharacterized LOC118701553; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701553, transcript variant X2
uncharacterized LOC118701553, transcript variant X1
uncharacterized LOC118701554; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129046996; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701517; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047004; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701477; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701477, transcript variant X1
uncharacterized LOC118701477, transcript variant X2
AN1-type zinc finger protein 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
AN1-type zinc finger protein 5-like, transcript variant X2
AN1-type zinc finger protein 5-like, transcript variant X1
AN1-type zinc finger protein 5-like, transcript variant X5
AN1-type zinc finger protein 5-like, transcript variant X4
AN1-type zinc finger protein 5-like, transcript variant X3
AN1-type zinc finger protein 5-like isoform X1
AN1-type zinc finger protein 5-like isoform X2
uncharacterized LOC118701543; Derived by automated computational analysis using gene prediction method: Gnomon.
chromodomain-helicase-DNA-binding protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
chromodomain-helicase-DNA-binding protein 1-like, transcript variant X2
chromodomain-helicase-DNA-binding protein 1-like, transcript variant X1
chromodomain-helicase-DNA-binding protein 1-like isoform X2
chromodomain-helicase-DNA-binding protein 1-like isoform X1
uncharacterized LOC118701561; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701561, transcript variant X4
uncharacterized LOC118701561, transcript variant X1
uncharacterized LOC118701561, transcript variant X2
uncharacterized protein LOC118701561 isoform X1
uncharacterized protein LOC118701561 isoform X2
uncharacterized LOC118701561, transcript variant X3
transportin-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transportin-1-like, transcript variant X4
transportin-1-like, transcript variant X3
transportin-1-like, transcript variant X1
transportin-1-like, transcript variant X2
transportin-1-like, transcript variant X5
transportin-1-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
transportin-1-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uncharacterized LOC118701557; Derived by automated computational analysis using gene prediction method: Gnomon.
transitional endoplasmic reticulum ATPase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transitional endoplasmic reticulum ATPase-like, transcript variant X2
transitional endoplasmic reticulum ATPase-like, transcript variant X1
transitional endoplasmic reticulum ATPase-like isoform X1
transitional endoplasmic reticulum ATPase-like isoform X2
uncharacterized LOC118701525; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701562; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701562, transcript variant X1
uncharacterized LOC118701562, transcript variant X2
splicing regulatory glutamine/lysine-rich protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
splicing regulatory glutamine/lysine-rich protein 1-like, transcript variant X4
splicing regulatory glutamine/lysine-rich protein 1-like isoform X4
splicing regulatory glutamine/lysine-rich protein 1-like, transcript variant X3
splicing regulatory glutamine/lysine-rich protein 1-like, transcript variant X1
splicing regulatory glutamine/lysine-rich protein 1-like, transcript variant X2
splicing regulatory glutamine/lysine-rich protein 1-like, transcript variant X6
splicing regulatory glutamine/lysine-rich protein 1-like, transcript variant X5
splicing regulatory glutamine/lysine-rich protein 1-like isoform X3
splicing regulatory glutamine/lysine-rich protein 1-like isoform X2
splicing regulatory glutamine/lysine-rich protein 1-like isoform X1
splicing regulatory glutamine/lysine-rich protein 1-like isoform X5
uncharacterized LOC129047000; Derived by automated computational analysis using gene prediction method: Gnomon.
homer protein homolog 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701530; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701530, transcript variant X2
uncharacterized LOC118701530, transcript variant X1
creatine kinase S-type, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
MLV-related proviral Env polyprotein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
MLV-related proviral Env polyprotein-like
junctophilin-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
junctophilin-2-like, transcript variant X1
junctophilin-2-like, transcript variant X2
kinesin-like protein KIF2A; Derived by automated computational analysis using gene prediction method: Gnomon.
kinesin-like protein KIF2A, transcript variant X5
kinesin-like protein KIF2A, transcript variant X4
kinesin-like protein KIF2A, transcript variant X3
kinesin-like protein KIF2A, transcript variant X7
kinesin-like protein KIF2A, transcript variant X6
kinesin-like protein KIF2A, transcript variant X11
kinesin-like protein KIF2A, transcript variant X2
kinesin-like protein KIF2A, transcript variant X1
kinesin-like protein KIF2A, transcript variant X10
kinesin-like protein KIF2A, transcript variant X9
kinesin-like protein KIF2A, transcript variant X8
kinesin-like protein KIF2A, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
uncharacterized LOC118701536; Derived by automated computational analysis using gene prediction method: Gnomon.
nipped-B-like protein; Derived by automated computational analysis using gene prediction method: Gnomon.
nipped-B-like protein, transcript variant X1
nipped-B-like protein, transcript variant X2
nipped-B-like protein, transcript variant X4
nipped-B-like protein, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
uncharacterized LOC118701550; Derived by automated computational analysis using gene prediction method: Gnomon.
alpha-ketoglutarate dehydrogenase component 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
alpha-ketoglutarate dehydrogenase component 4-like
uncharacterized LOC129047006; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047001; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701534; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule-associated protein 1B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule-associated protein 1B-like, transcript variant X1
microtubule-associated protein 1B-like, transcript variant X2
microtubule-associated protein 1B-like, transcript variant X3
microtubule-associated protein 1B-like isoform X1
microtubule-associated protein 1B-like isoform X2
electromotor neuron-associated protein 1-like isoform X3
uncharacterized LOC118701533; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129046993; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701556; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701556, transcript variant X2
uncharacterized protein LOC118701556 isoform X2
uncharacterized LOC118701556, transcript variant X5
uncharacterized LOC118701556, transcript variant X4
uncharacterized LOC118701556, transcript variant X1
uncharacterized protein LOC118701556 isoform X5
uncharacterized protein LOC118701556 isoform X4
uncharacterized protein LOC118701556 isoform X1
uncharacterized LOC118701556, transcript variant X3
uncharacterized protein LOC118701556 isoform X3
uncharacterized LOC118701547; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701547, transcript variant X1
uncharacterized LOC118701547, transcript variant X2
transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC118701519; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129046994; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP synthase subunit alpha, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP synthase subunit alpha, mitochondrial-like
uncharacterized LOC129047003; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701558; Derived by automated computational analysis using gene prediction method: Gnomon.
protein C18orf25-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein C18orf25-like, transcript variant X3
protein C18orf25-like, transcript variant X5
protein C18orf25-like, transcript variant X1
protein C18orf25-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
protein C18orf25-like, transcript variant X2
uncharacterized LOC118701489; Derived by automated computational analysis using gene prediction method: Gnomon.
clumping factor B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 SUMO-protein ligase PIAS2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 SUMO-protein ligase PIAS2-like, transcript variant X1
E3 SUMO-protein ligase PIAS2-like, transcript variant X2
E3 SUMO-protein ligase PIAS2-like isoform X2
E3 SUMO-protein ligase PIAS2-like isoform X1
E3 SUMO-protein ligase PIAS2-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
E3 SUMO-protein ligase PIAS2-like isoform X3
E3 SUMO-protein ligase PIAS2-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
E3 SUMO-protein ligase PIAS2-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
E3 SUMO-protein ligase PIAS2-like, transcript variant X6
E3 SUMO-protein ligase PIAS2-like, transcript variant X5
E3 SUMO-protein ligase PIAS2-like isoform X4
uncharacterized LOC118701499; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701499, transcript variant X2
uncharacterized LOC118701499, transcript variant X1
uncharacterized LOC118701500; Derived by automated computational analysis using gene prediction method: Gnomon.
SET-binding protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
SET-binding protein-like, transcript variant X2
SET-binding protein-like, transcript variant X3
SET-binding protein-like, transcript variant X1
SET-binding protein-like, transcript variant X4
SET-binding protein-like, transcript variant X7
SET-binding protein-like, transcript variant X6
SET-binding protein-like, transcript variant X8
SET-binding protein-like, transcript variant X5
uncharacterized LOC129046999; Derived by automated computational analysis using gene prediction method: Gnomon.
protein FAM219A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein FAM219A-like, transcript variant X1
protein FAM219A-like, transcript variant X2
protein FAM219A-like, transcript variant X3
uncharacterized LOC118701549; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC118701486; Derived by automated computational analysis using gene prediction method: Gnomon.
DDB1- and CUL4-associated factor 12-like; Derived by automated computational analysis using gene prediction method: Gnomon.
DDB1- and CUL4-associated factor 12-like, transcript variant X3
DDB1- and CUL4-associated factor 12-like isoform X3
DDB1- and CUL4-associated factor 12-like, transcript variant X2
DDB1- and CUL4-associated factor 12-like, transcript variant X1
DDB1- and CUL4-associated factor 12-like, transcript variant X4
DDB1- and CUL4-associated factor 12-like isoform X2
DDB1- and CUL4-associated factor 12-like isoform X1
DDB1- and CUL4-associated factor 12-like isoform X4
ubiquitin-associated protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin-associated protein 1-like, transcript variant X2
ubiquitin-associated protein 1-like, transcript variant X4
ubiquitin-associated protein 1-like, transcript variant X1
ubiquitin-associated protein 1-like isoform X3
ubiquitin-associated protein 1-like isoform X1
ubiquitin-associated protein 1-like, transcript variant X3
ubiquitin-associated protein 1-like isoform X2
syncytin-A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701518; Derived by automated computational analysis using gene prediction method: Gnomon.
neuromedin-K receptor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: neuromedin-K receptor-like
uncharacterized LOC118701479; Derived by automated computational analysis using gene prediction method: Gnomon.
NAD-dependent malic enzyme, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
mothers against decapentaplegic homolog 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 4-like, transcript variant X1
mothers against decapentaplegic homolog 4-like, transcript variant X2
mothers against decapentaplegic homolog 4-like
uncharacterized LOC118701520; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding E3 ubiquitin-protein ligase MEX3C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding E3 ubiquitin-protein ligase MEX3C-like
uncharacterized LOC118701535; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118701513; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129046997; Derived by automated computational analysis using gene prediction method: Gnomon.
60S ribosomal protein L17-like; Derived by automated computational analysis using gene prediction method: Gnomon.
60S ribosomal protein L17-like, transcript variant X3
60S ribosomal protein L17-like, transcript variant X2
60S ribosomal protein L17-like, transcript variant X1
small nucleolar RNA SNORD58; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00151
Derived by automated computational analysis using gene prediction method: cmsearch.
60S ribosomal protein L17-like isoform X1
60S ribosomal protein L17-like isoform X2
UPF0729 protein C18orf32-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129046998; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC129046998
CBP80/20-dependent translation initiation factor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
CBP80/20-dependent translation initiation factor-like, transcript variant X3
CBP80/20-dependent translation initiation factor-like, transcript variant X2
CBP80/20-dependent translation initiation factor-like, transcript variant X1
CBP80/20-dependent translation initiation factor-like isoform X3
CBP80/20-dependent translation initiation factor-like isoform X2
CBP80/20-dependent translation initiation factor-like isoform X1
CBP80/20-dependent translation initiation factor-like, transcript variant X4
CBP80/20-dependent translation initiation factor-like isoform X4
CBP80/20-dependent translation initiation factor-like, transcript variant X5
CBP80/20-dependent translation initiation factor-like isoform X5
uncharacterized LOC118701493; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoprotein K; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoprotein K, transcript variant X8
heterogeneous nuclear ribonucleoprotein K, transcript variant X2
heterogeneous nuclear ribonucleoprotein K, transcript variant X10
heterogeneous nuclear ribonucleoprotein K, transcript variant X7
heterogeneous nuclear ribonucleoprotein K, transcript variant X11
heterogeneous nuclear ribonucleoprotein K, transcript variant X6
heterogeneous nuclear ribonucleoprotein K, transcript variant X1
heterogeneous nuclear ribonucleoprotein K, transcript variant X4
heterogeneous nuclear ribonucleoprotein K, transcript variant X9
heterogeneous nuclear ribonucleoprotein K, transcript variant X3
heterogeneous nuclear ribonucleoprotein K, transcript variant X5
heterogeneous nuclear ribonucleoprotein K isoform X4
heterogeneous nuclear ribonucleoprotein K isoform X2
heterogeneous nuclear ribonucleoprotein K isoform X3
heterogeneous nuclear ribonucleoprotein K isoform X5
heterogeneous nuclear ribonucleoprotein K isoform X1
uncharacterized LOC129047002; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129047007; Derived by automated computational analysis using gene prediction method: Gnomon.
spindlin-Z-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Friend virus susceptibility protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Friend virus susceptibility protein 1-like, transcript variant X1
Friend virus susceptibility protein 1-like, transcript variant X2
Friend virus susceptibility protein 1-like, transcript variant X4
Friend virus susceptibility protein 1-like, transcript variant X3
Friend virus susceptibility protein 1-like