Molothrus ater isolate BHLD 08-10-18 breed brown headed cowbird chromosome 30, BPBGC_Mater_1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Molothrus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM022869.2.\n\nOn Mar 24, 2023 this sequence version replaced NC_050507.1.\nAssembly name: BPBGC_Mater_1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2022/10/11. The original whole-genome shotgun project\nhas the accession JAAQZI000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Date :: OCT-2019\nAssembly Method :: Canu v. OCT-2019\nAssembly Name :: BPBGC_Mater_1.1\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio Sequel II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_012460135.2-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/22/2023\n##Genome-Annotation-Data-END##
cyclic AMP-dependent transcription factor ATF-7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
cyclic AMP-dependent transcription factor ATF-7-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
TARBP2 subunit of RISC loading complex; Derived by automated computational analysis using gene prediction method: Gnomon.
TARBP2 subunit of RISC loading complex, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
TARBP2 subunit of RISC loading complex, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
TARBP2 subunit of RISC loading complex, transcript variant X4
TARBP2 subunit of RISC loading complex, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
TARBP2 subunit of RISC loading complex, transcript variant X1
RISC-loading complex subunit TARBP2 isoform X4
RISC-loading complex subunit TARBP2 isoform X3
RISC-loading complex subunit TARBP2 isoform X2
RISC-loading complex subunit TARBP2 isoform X1
RISC-loading complex subunit TARBP2 isoform X5
mitogen-activated protein kinase kinase kinase 12; Derived by automated computational analysis using gene prediction method: Gnomon.
mitogen-activated protein kinase kinase kinase 12
COORDINATES: polyA evidence [ECO:0006239]
poly(rC) binding protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
poly(rC) binding protein 2, transcript variant X10
poly(rC) binding protein 2, transcript variant X8
poly(rC) binding protein 2, transcript variant X6
poly(rC) binding protein 2, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
poly(rC) binding protein 2, transcript variant X3
poly(rC) binding protein 2, transcript variant X9
poly(rC) binding protein 2, transcript variant X7
poly(rC) binding protein 2, transcript variant X1
poly(rC) binding protein 2, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
poly(rC) binding protein 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
proline-rich protein 13-like; Derived by automated computational analysis using gene prediction method: Gnomon.
anti-Mullerian hormone receptor type 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Sp1 transcription factor; Derived by automated computational analysis using gene prediction method: Gnomon.
Sp1 transcription factor, transcript variant X1
Sp1 transcription factor, transcript variant X2
splicing factor 3A subunit 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
splicing factor 3A subunit 2-like, transcript variant X4
splicing factor 3A subunit 2-like, transcript variant X12
splicing factor 3A subunit 2-like, transcript variant X1
splicing factor 3A subunit 2-like, transcript variant X13
splicing factor 3A subunit 2-like, transcript variant X10
splicing factor 3A subunit 2-like, transcript variant X11
splicing factor 3A subunit 2-like, transcript variant X8
splicing factor 3A subunit 2-like, transcript variant X3
splicing factor 3A subunit 2-like, transcript variant X7
splicing factor 3A subunit 2-like, transcript variant X2
splicing factor 3A subunit 2-like, transcript variant X9
splicing factor 3A subunit 2-like, transcript variant X6
splicing factor 3A subunit 2-like, transcript variant X5
splicing factor 3A subunit 2-like isoform X4
splicing factor 3A subunit 2-like isoform X12
splicing factor 3A subunit 2-like isoform X1
splicing factor 3A subunit 2-like isoform X13
splicing factor 3A subunit 2-like isoform X10
splicing factor 3A subunit 2-like isoform X11
splicing factor 3A subunit 2-like isoform X8
splicing factor 3A subunit 2-like isoform X3
splicing factor 3A subunit 2-like isoform X7
splicing factor 3A subunit 2-like isoform X2
splicing factor 3A subunit 2-like isoform X9
splicing factor 3A subunit 2-like isoform X6
splicing factor 3A subunit 2-like isoform X5
Sp7 transcription factor; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
aladin WD repeat nucleoporin; Derived by automated computational analysis using gene prediction method: Gnomon.
aladin WD repeat nucleoporin, transcript variant X2
aladin WD repeat nucleoporin, transcript variant X1
aladin WD repeat nucleoporin, transcript variant X3
aladin WD repeat nucleoporin, transcript variant X4
MYG1 exonuclease; Derived by automated computational analysis using gene prediction method: Gnomon.
vitamin D receptor; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein 106C; Derived by automated computational analysis using gene prediction method: Gnomon.
collagen alpha-1(II) chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
SUMO specific peptidase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphofructokinase, muscle; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphofructokinase, muscle, transcript variant X2
phosphofructokinase, muscle, transcript variant X1
ATP-dependent 6-phosphofructokinase, muscle type isoform X2
ATP-dependent 6-phosphofructokinase, muscle type isoform X1
ankyrin repeat and SOCS box containing 8; Derived by automated computational analysis using gene prediction method: Gnomon.
ankyrin repeat and SOCS box containing 8, transcript variant X2
ankyrin repeat and SOCS box containing 8, transcript variant X1
ankyrin repeat and SOCS box protein 8 isoform X2
ankyrin repeat and SOCS box protein 8 isoform X1
uncharacterized LOC118697192; Derived by automated computational analysis using gene prediction method: Gnomon.
RING finger protein 212B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RING finger protein 212B-like, transcript variant X2
uncharacterized protein LOC118697325 isoform X2
RING finger protein 212B-like, transcript variant X1
RING finger protein 212B-like isoform X1
zinc finger protein 787-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129046986; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118697194; Derived by automated computational analysis using gene prediction method: Gnomon.
integrin subunit alpha 5; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
gametocyte specific factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
gametocyte specific factor 1, transcript variant X1
gametocyte specific factor 1, transcript variant X2
NCK associated protein 1 like; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphodiesterase 1B; Derived by automated computational analysis using gene prediction method: Gnomon.
dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B
protein phosphatase 1 regulatory inhibitor subunit 1A; Derived by automated computational analysis using gene prediction method: Gnomon.
protein phosphatase 1 regulatory inhibitor subunit 1A
protein phosphatase 1 regulatory subunit 1A
thymocyte expressed, positive selection associated 1; Derived by automated computational analysis using gene prediction method: Gnomon.
thymocyte expressed, positive selection associated 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
thymocyte expressed, positive selection associated 1, transcript variant X2
thymocyte expressed, positive selection associated 1, transcript variant X3
cell surface glycoprotein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
neuronal differentiation 4; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
endonuclease, poly(U) specific; Derived by automated computational analysis using gene prediction method: Gnomon.
Rap guanine nucleotide exchange factor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Rap guanine nucleotide exchange factor 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
Rap guanine nucleotide exchange factor 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
rap guanine nucleotide exchange factor 3 isoform X1
rap guanine nucleotide exchange factor 3 isoform X2
solute carrier family 48 member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
twist-related protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
histone deacetylase 7; Derived by automated computational analysis using gene prediction method: Gnomon.
histone deacetylase 7, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
histone deacetylase 7, transcript variant X3
histone deacetylase 7, transcript variant X1
interferon-induced protein with tetratricopeptide repeats 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
interferon-induced protein with tetratricopeptide repeats 2-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: interferon-induced protein with tetratricopeptide repeats 2-like
Rac GTPase activating protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
acid sensing ion channel subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
acid sensing ion channel subunit 1, transcript variant X2
acid sensing ion channel subunit 1, transcript variant X1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
glycerol-3-phosphate dehydrogenase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic
cytochrome c oxidase assembly protein COX14 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome c oxidase assembly protein COX14 homolog
ceramide synthase 5; Derived by automated computational analysis using gene prediction method: Gnomon.
ceramide synthase 5, transcript variant X3
ceramide synthase 5, transcript variant X1
ceramide synthase 5, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
LIM domain and actin binding 1; Derived by automated computational analysis using gene prediction method: Gnomon.
LIM domain and actin binding 1, transcript variant X2
LIM domain and actin binding 1, transcript variant X3
LIM domain and actin binding 1, transcript variant X1
LIM domain and actin-binding protein 1 isoform X2
LIM domain and actin-binding protein 1 isoform X3
LIM domain and actin-binding protein 1 isoform X1
La ribonucleoprotein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
La ribonucleoprotein 4, transcript variant X3
La ribonucleoprotein 4, transcript variant X2
La ribonucleoprotein 4, transcript variant X4
La ribonucleoprotein 4, transcript variant X1
disco interacting protein 2 homolog B; Derived by automated computational analysis using gene prediction method: Gnomon.
disco interacting protein 2 homolog B, transcript variant X1
disco interacting protein 2 homolog B, transcript variant X2
disco interacting protein 2 homolog B, transcript variant X3
disco-interacting protein 2 homolog B isoform X1
disco-interacting protein 2 homolog B isoform X2
disco-interacting protein 2 homolog B isoform X3
activating transcription factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
activating transcription factor 1, transcript variant X2
cyclic AMP-dependent transcription factor ATF-1 isoform X2
activating transcription factor 1, transcript variant X1
cyclic AMP-dependent transcription factor ATF-1 isoform X1
transmembrane serine protease 12; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: transmembrane protease serine 12
thiol methyltransferase 1A; Derived by automated computational analysis using gene prediction method: Gnomon.
putative methyltransferase-like protein 7A
sodium voltage-gated channel alpha subunit 8; Derived by automated computational analysis using gene prediction method: Gnomon.
sodium voltage-gated channel alpha subunit 8, transcript variant X2
sodium voltage-gated channel alpha subunit 8, transcript variant X1
sodium channel protein type 8 subunit alpha isoform X2
sodium channel protein type 8 subunit alpha isoform X1
uncharacterized LOC129046989; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129046989, transcript variant X1
uncharacterized LOC129046989, transcript variant X2
transmembrane and death domain 1; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane and death domain protein 1
fidgetin like 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
uncharacterized LOC118697398; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118697398, transcript variant X3
uncharacterized LOC118697398, transcript variant X2
uncharacterized LOC118697398, transcript variant X1
extra spindle pole bodies like 1, separase; Derived by automated computational analysis using gene prediction method: Gnomon.
extra spindle pole bodies like 1, separase
aquaporin-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
lens fiber major intrinsic protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 Proteins
protein timeless homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
protein timeless homolog, transcript variant X2
protein timeless homolog, transcript variant X1
apolipoprotein F-like; Derived by automated computational analysis using gene prediction method: Gnomon.
signal transducer and activator of transcription 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
signal transducer and activator of transcription 2-like, transcript variant X2
signal transducer and activator of transcription 2-like, transcript variant X1
signal transducer and activator of transcription 2-like
interleukin 23 subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Derived by automated computational analysis using gene prediction method: Gnomon.
PAN2-PAN3 deadenylation complex catalytic subunit PAN2
protein canopy homolog 2; Derived by automated computational analysis using gene prediction method: Gnomon.
citrate synthase; Derived by automated computational analysis using gene prediction method: Gnomon.
coenzyme Q-binding protein COQ10 homolog A, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
coenzyme Q-binding protein COQ10 homolog A, mitochondrial
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C
solute carrier family 39 member 5; Derived by automated computational analysis using gene prediction method: Gnomon.
nucleic acid binding protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
nucleic acid binding protein 2, transcript variant X4
nucleic acid binding protein 2, transcript variant X2
nucleic acid binding protein 2, transcript variant X3
nucleic acid binding protein 2, transcript variant X1
ring finger protein 41; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA serine (anticodon CGA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2; Derived by automated computational analysis using gene prediction method: Gnomon.
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC2
myosin light polypeptide 6; Derived by automated computational analysis using gene prediction method: Gnomon.
myosin light polypeptide 6, transcript variant X2
myosin light polypeptide 6, transcript variant X1
extended synaptotagmin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger CCCH-type containing 10; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger CCCH-type containing 10, transcript variant X2
zinc finger CCCH-type containing 10, transcript variant X1
zinc finger CCCH domain-containing protein 10
uncharacterized LOC118697333; Derived by automated computational analysis using gene prediction method: Gnomon.
proliferation-associated 2G4; Derived by automated computational analysis using gene prediction method: Gnomon.
erb-b2 receptor tyrosine kinase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins
ribosomal protein S26; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
zinc transporter ZIP10-like; Derived by automated computational analysis using gene prediction method: Gnomon.
coenzyme Q-binding protein COQ10 homolog A, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
coenzyme Q-binding protein COQ10 homolog A, mitochondrial-like
citrate synthase, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
protein canopy homolog 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
signal transducer and activator of transcription 2; Derived by automated computational analysis using gene prediction method: Gnomon.
signal transducer and activator of transcription 2, transcript variant X2
signal transducer and activator of transcription 2, transcript variant X1
signal transducer and activator of transcription 2
apolipoprotein F; Derived by automated computational analysis using gene prediction method: Gnomon.
lens fiber major intrinsic protein; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 Proteins
RNA binding motif single stranded interacting protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA binding motif single stranded interacting protein 2
RNA-binding motif, single-stranded-interacting protein 2
bromodomain adjacent to zinc finger domain 2A; Derived by automated computational analysis using gene prediction method: Gnomon.
bromodomain adjacent to zinc finger domain 2A, transcript variant X2
bromodomain adjacent to zinc finger domain 2A, transcript variant X1
bromodomain adjacent to zinc finger domain protein 2A
ATP synthase F1 subunit beta; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP synthase subunit beta, mitochondrial
small nucleolar RNA SNORD59; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00273
Derived by automated computational analysis using gene prediction method: cmsearch.
prostaglandin E synthase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
prostaglandin E synthase 3, transcript variant X2
prostaglandin E synthase 3, transcript variant X1
nascent polypeptide associated complex subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
nascent polypeptide associated complex subunit alpha
nascent polypeptide-associated complex subunit alpha
basic proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
basic proline-rich protein-like, transcript variant X2
basic proline-rich protein-like, transcript variant X3
basic proline-rich protein-like, transcript variant X1
basic proline-rich protein-like isoform X3
basic proline-rich protein-like isoform X2
basic proline-rich protein-like isoform X1
DNA primase subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA primase subunit 1, transcript variant X2
DNA primase subunit 1, transcript variant X1
DNA primase subunit 1, transcript variant X3
retinol dehydrogenase 16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins
G protein-coupled receptor 182; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 39; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 39
zinc finger and BTB domain-containing protein 39
tachykinin precursor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
myosin IA; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins
nuclear envelope integral membrane protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
nuclear envelope integral membrane protein 1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
LOW QUALITY PROTEIN: nuclear envelope integral membrane protein 1
NGFI-A binding protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
NGFI-A binding protein 2, transcript variant X1
NGFI-A binding protein 2, transcript variant X3
NGFI-A binding protein 2, transcript variant X2
signal transducer and activator of transcription 6; Derived by automated computational analysis using gene prediction method: Gnomon.
signal transducer and activator of transcription 6, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
signal transducer and activator of transcription 6, transcript variant X1
signal transducer and activator of transcription 6
LDL receptor related protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
LDL receptor related protein 1, transcript variant X5
LDL receptor related protein 1, transcript variant X1
LDL receptor related protein 1, transcript variant X3
LDL receptor related protein 1, transcript variant X2
LDL receptor related protein 1, transcript variant X4
prolow-density lipoprotein receptor-related protein 1 isoform X1
prolow-density lipoprotein receptor-related protein 1 isoform X3
prolow-density lipoprotein receptor-related protein 1 isoform X2
prolow-density lipoprotein receptor-related protein 1 isoform X4
prolow-density lipoprotein receptor-related protein 1 isoform X5
neurexophilin 4; Derived by automated computational analysis using gene prediction method: Gnomon.
serine hydroxymethyltransferase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
serine hydroxymethyltransferase, mitochondrial
NDUFA4 mitochondrial complex associated like 2; Derived by automated computational analysis using gene prediction method: Gnomon.
NDUFA4 mitochondrial complex associated like 2
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2
SH3 and cysteine rich domain 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
SH3 and cysteine-rich domain-containing protein 3
R3H domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
R3H domain containing 2, transcript variant X3
R3H domain containing 2, transcript variant X2
R3H domain containing 2, transcript variant X1
R3H domain-containing protein 2 isoform X2
R3H domain-containing protein 2 isoform X1
uncharacterized LOC129046988; Derived by automated computational analysis using gene prediction method: Gnomon.
inhibin beta C chain; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
LOW QUALITY PROTEIN: inhibin beta C chain
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
GLI family zinc finger 1; Derived by automated computational analysis using gene prediction method: Gnomon.
peripherin; Derived by automated computational analysis using gene prediction method: Gnomon.
tubulin alpha-1C chain; Derived by automated computational analysis using gene prediction method: Gnomon.
tubulin alpha 1a; Derived by automated computational analysis using gene prediction method: Gnomon.
tubulin alpha-1B chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
limb development membrane protein 1 like; Derived by automated computational analysis using gene prediction method: Gnomon.
limb development membrane protein 1 like, transcript variant X1
limb development membrane protein 1 like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
desert hedgehog signaling molecule; Derived by automated computational analysis using gene prediction method: Gnomon.
lysine methyltransferase 2D; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2D
protein kinase AMP-activated non-catalytic subunit gamma 1; Derived by automated computational analysis using gene prediction method: Gnomon.
protein kinase AMP-activated non-catalytic subunit gamma 1, transcript variant X1
protein kinase AMP-activated non-catalytic subunit gamma 1, transcript variant X2
5'-AMP-activated protein kinase subunit gamma-1 isoform X1
5'-AMP-activated protein kinase subunit gamma-1 isoform X2
dendrin; Derived by automated computational analysis using gene prediction method: Gnomon.
Wnt family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ADP ribosylation factor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
FKBP prolyl isomerase 11; Derived by automated computational analysis using gene prediction method: Gnomon.
peptidyl-prolyl cis-trans isomerase FKBP11
coiled-coil domain containing 65; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain containing 65, transcript variant X1
coiled-coil domain containing 65, transcript variant X2
dynein regulatory complex subunit 2 isoform X1
dynein regulatory complex subunit 2 isoform X2
Rho family GTPase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
DEAD-box helicase 23; Derived by automated computational analysis using gene prediction method: Gnomon.
DEAD-box helicase 23, transcript variant X1
DEAD-box helicase 23, transcript variant X2
probable ATP-dependent RNA helicase DDX23 isoform X1
probable ATP-dependent RNA helicase DDX23 isoform X2
calcium voltage-gated channel auxiliary subunit beta 3; Derived by automated computational analysis using gene prediction method: Gnomon.
calcium voltage-gated channel auxiliary subunit beta 3, transcript variant X1
calcium voltage-gated channel auxiliary subunit beta 3, transcript variant X3
calcium voltage-gated channel auxiliary subunit beta 3, transcript variant X2
voltage-dependent L-type calcium channel subunit beta-3 isoform X1
voltage-dependent L-type calcium channel subunit beta-3 isoform X3
voltage-dependent L-type calcium channel subunit beta-3 isoform X2
adenylate cyclase 6; Derived by automated computational analysis using gene prediction method: Gnomon.
cyclin T1; Derived by automated computational analysis using gene prediction method: Gnomon.
KAT8 regulatory NSL complex subunit 2; Derived by automated computational analysis using gene prediction method: Gnomon.
KAT8 regulatory NSL complex subunit 2, transcript variant X2
KAT8 regulatory NSL complex subunit 2, transcript variant X1
small nucleolar RNA SNORA2/SNORA34 family; Derived by automated computational analysis using gene prediction method: cmsearch.
small nucleolar RNA SNORA2/SNORA34 family
COORDINATES: nucleotide motif:Rfam:14.6:RF00410
NCK associated protein 5 like; Derived by automated computational analysis using gene prediction method: Gnomon.
NCK associated protein 5 like, transcript variant X2
NCK associated protein 5 like, transcript variant X6
NCK associated protein 5 like, transcript variant X1
NCK associated protein 5 like, transcript variant X4
NCK associated protein 5 like, transcript variant X3
NCK associated protein 5 like, transcript variant X5
NCK associated protein 5 like, transcript variant X7
nck-associated protein 5-like isoform X1
nck-associated protein 5-like isoform X2
transmembrane BAX inhibitor motif containing 6; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane BAX inhibitor motif containing 6, transcript variant X1
transmembrane BAX inhibitor motif containing 6, transcript variant X2
formin like 3; Derived by automated computational analysis using gene prediction method: Gnomon.
autophagy related 101; Derived by automated computational analysis using gene prediction method: Gnomon.
autophagy related 101, transcript variant X1
autophagy related 101, transcript variant X3
autophagy related 101, transcript variant X2
autophagy-related protein 101 isoform X1
autophagy-related protein 101 isoform X2
nuclear receptor subfamily 4 group A member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
nuclear receptor subfamily 4 group A member 1
trafficking regulator and scaffold protein tamalin; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking regulator and scaffold protein tamalin
activin A receptor type 1B; Derived by automated computational analysis using gene prediction method: Gnomon.
activin A receptor type 1B, transcript variant X2
activin A receptor type 1B, transcript variant X1
activin A receptor like type 1; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase receptor R3
ankyrin repeat domain 33; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
forkhead box protein J1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
LETM1 domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
LETM1 domain containing 1, transcript variant X2
LETM1 domain-containing protein 1 isoform X2
LETM1 domain containing 1, transcript variant X1
LETM1 domain-containing protein 1 isoform X1
beta-1,4-N-acetyl-galactosaminyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
beta-1,4-N-acetyl-galactosaminyltransferase 1, transcript variant X2
beta-1,4-N-acetyl-galactosaminyltransferase 1, transcript variant X1
beta-1,4 N-acetylgalactosaminyltransferase 1
protein OS-9; Derived by automated computational analysis using gene prediction method: Gnomon.
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2, transcript variant X2
arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2, transcript variant X1
arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X2
arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1
arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2, transcript variant X3
arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X3
uncharacterized LOC129046984; Derived by automated computational analysis using gene prediction method: Gnomon.
protein OS-9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B-like
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2; Derived by automated computational analysis using gene prediction method: Gnomon.
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2, transcript variant X4
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2, transcript variant X2
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2, transcript variant X1
arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X4
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2, transcript variant X3
uridylate-specific endoribonuclease A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uridylate-specific endoribonuclease A-like
tetraspanin 31; Derived by automated computational analysis using gene prediction method: Gnomon.
25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial
methyltransferase 1, tRNA methylguanosine; Derived by automated computational analysis using gene prediction method: Gnomon.
methyltransferase 1, tRNA methylguanosine, transcript variant X2
tRNA (guanine-N(7)-)-methyltransferase isoform X2
methyltransferase 1, tRNA methylguanosine, transcript variant X1
tRNA (guanine-N(7)-)-methyltransferase isoform X1
EEF1A lysine methyltransferase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Ts translation elongation factor, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
Ts translation elongation factor, mitochondrial
natural resistance-associated macrophage protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
natural resistance-associated macrophage protein 2-like
cysteine and serine rich nuclear protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
cysteine and serine rich nuclear protein 2
uncharacterized LOC118697252; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118697252, transcript variant X1
uncharacterized LOC118697252, transcript variant X2
uncharacterized protein LOC118697252 isoform X1
uncharacterized protein LOC118697252 isoform X2
uncharacterized LOC118697272; Derived by automated computational analysis using gene prediction method: Gnomon.
methionyl-tRNA synthetase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
methionyl-tRNA synthetase 1, transcript variant X1
methionyl-tRNA synthetase 1, transcript variant X2
methionine--tRNA ligase, cytoplasmic isoform X1
methionine--tRNA ligase, cytoplasmic isoform X2
DNA damage inducible transcript 3; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA damage-inducible transcript 3 protein
dynactin subunit 2; Derived by automated computational analysis using gene prediction method: Gnomon.
kinesin family member 5A; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: kinesin heavy chain
phosphatidylinositol-5-phosphate 4-kinase type 2 gamma; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphatidylinositol-5-phosphate 4-kinase type 2 gamma
phosphatidylinositol 5-phosphate 4-kinase type-2 gamma
deltex E3 ubiquitin ligase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
probable E3 ubiquitin-protein ligase DTX3
transcription factor CP2; Derived by automated computational analysis using gene prediction method: Gnomon.
transcription factor CP2, transcript variant X3
transcription factor CP2, transcript variant X2
transcription factor CP2, transcript variant X1
alpha-globin transcription factor CP2 isoform X2
alpha-globin transcription factor CP2 isoform X1
POU class 6 homeobox 1; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: POU domain, class 6, transcription factor 1
DAZ associated protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
small cell adhesion glycoprotein; Derived by automated computational analysis using gene prediction method: Gnomon.
bridging integrator 2; Derived by automated computational analysis using gene prediction method: Gnomon.
chymotrypsin-like elastase family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
chymotrypsin-like elastase family member 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 Proteins
chymotrypsin like elastase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
polypeptide N-acetylgalactosaminyltransferase 6; Derived by automated computational analysis using gene prediction method: Gnomon.
polypeptide N-acetylgalactosaminyltransferase 6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
solute carrier family 4 member 8; Derived by automated computational analysis using gene prediction method: Gnomon.
electroneutral sodium bicarbonate exchanger 1
pro-glucagon-like; Derived by automated computational analysis using gene prediction method: Gnomon.
aquaporin 5; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 64 Proteins
aquaporin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 60 Proteins
Fas apoptotic inhibitory molecule 2; Derived by automated computational analysis using gene prediction method: Gnomon.
BCDIN3 domain containing RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Gnomon.
BCDIN3 domain containing RNA methyltransferase
keratin 80; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin, type II cytoskeletal cochleal; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin, type II cytoskeletal 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin, type II cytoskeletal 6A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 231 Proteins
keratin, type II cytoskeletal 75-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 240 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 205 Proteins
keratin, type II cytoskeletal cochleal-like; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin, type II cytoskeletal cochleal-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 152 Proteins
keratin, type II cytoskeletal 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 249 Proteins
keratin, type II cytoskeletal 7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 243 Proteins
keratin, type II cytoskeletal 8-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 239 Proteins
uncharacterized LOC118697382; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 344 Proteins
LOW QUALITY PROTEIN: uncharacterized protein LOC118697382
keratin, type II cytoskeletal 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 218 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 141 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 224 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: keratin, type II cytoskeletal 8-like
keratin 18; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 Proteins
eukaryotic translation initiation factor 4B; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 4B
LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4B
tensin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
SPRY domain containing 3; Derived by automated computational analysis using gene prediction method: Gnomon.
SPRY domain containing 3, transcript variant X2
SPRY domain containing 3, transcript variant X1
SPRY domain containing 3, transcript variant X3
SPRY domain-containing protein 3 isoform X2
SPRY domain-containing protein 3 isoform X1
SPRY domain-containing protein 3 isoform X3
major facilitator superfamily domain containing 5; Derived by automated computational analysis using gene prediction method: Gnomon.
major facilitator superfamily domain containing 5
retinoic acid receptor gamma; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 740; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 740, transcript variant X2
zinc finger protein 740, transcript variant X3
zinc finger protein 740, transcript variant X1
cysteine sulfinic acid decarboxylase; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118697397; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118697397, transcript variant X1
uncharacterized LOC118697397, transcript variant X2
cyclin-A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins