Eggerthella lenta strain APC055-529-1D plasmid p529-1D_1, complete sequence.
Bacteria; Actinomycetota; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.
Selective Isolation of Eggerthella lenta from Human Faeces and Characterisation of the Species Prophage Diversity
Submitted (08-DEC-2021) APC microbiome, Unversity College Cork, College Road, Cork, Co. Cork T12 YT20, Ireland
REFSEQ INFORMATION: The reference sequence is identical to\nCP089332.1.\nBacteria and source DNA available from Colin Hill.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2008\nAssembly Method :: Unicycler v. v0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30.0x\nSequencing Technology :: Illumina; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 21:55:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,038\nCDSs (total) :: 2,978\nGenes (coding) :: 2,963\nCDSs (with protein) :: 2,963\nGenes (RNA) :: 60\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 15\nCDSs (without protein) :: 15\nPseudo Genes (ambiguous residues) :: 0 of 15\nPseudo Genes (frameshifted) :: 3 of 15\nPseudo Genes (incomplete) :: 13 of 15\nPseudo Genes (internal stop) :: 0 of 15\nPseudo Genes (multiple problems) :: 1 of 15\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013849.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009608402.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009608401.1