Clostridium aceticum strain DSM 1496 plasmid CACET_5p, complete sequence.
type: Entry
definition: Clostridium aceticum strain DSM 1496 plasmid CACET_5p, complete sequence.
sequence version: NZ_CP009688.1
sequence date: 2023-04-13
sequence: sequence
division: CON
label: NZ_CP009688.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03768360
keyword: RefSeq
source: Clostridium aceticum
organism: Clostridium aceticum
taxonomy: Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
reference: 1
references: 26184942
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP009688.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: MIRA v. 3.4\nGenome Coverage :: 76.97\nSequencing Technology :: Sanger dideoxy sequencing; 454; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/13/2023 01:55:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,986\nCDSs (total) :: 3,889\nGenes (coding) :: 3,841\nCDSs (with protein) :: 3,841\nGenes (RNA) :: 97\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 5\nPseudo Genes (total) :: 48\nCDSs (without protein) :: 48\nPseudo Genes (ambiguous residues) :: 0 of 48\nPseudo Genes (frameshifted) :: 14 of 48\nPseudo Genes (incomplete) :: 34 of 48\nPseudo Genes (internal stop) :: 10 of 48\nPseudo Genes (multiple problems) :: 8 of 48\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5719
topology: circular
so has quality: SO_0000988
location: 1..5719
location: region:1-5719:1
RO_0002162: 84022

NZ_CP009688
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03768360
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Rnf- and Cytochrome-Containing Autotrophic Acetogen Clostridium aceticum DSM 1496
author: Poehlein, A.
author: Bengelsdorf, F.R.
author: Schiel-Bengelsdorf, B.
author: Gottschalk, G.
author: Daniel, R.
author: Durre, P.
journal: Genome Announc 3 (4), e00786-15 (2015)
pubmed: 26184942
comments: Publication Status: Online-Only

26184942
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Poehlein, A.
author: Schiel-Bengelsdorf, B.
author: Gottschalk, G.
author: Duerre, P.
author: Daniel, R.
journal: Submitted (21-OCT-2014) Genomic and Applied Microbiology and Goettingen Genomics Laboratory, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen, Lower Saxony, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5719:1
position: 5719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5719:1:source
so part of: sequence
organism: Clostridium aceticum
mol type: genomic DNA
strain: DSM 1496
culture collection: DSM:1496
type material: type strain of Clostridium aceticum
plasmid: CACET_5p

84022
type: Taxonomy
SIO_000068: taxonomy

CACET_RS19255
type: Gene
subclass of: SO_0000704
RO_0002162: 84022
locus tag: CACET_RS19255
old locus tag: CACET_5p00010
so part of: sequence
location: 83..1258
location: region:83-1258:1
so has part: feature:83-1258:1:exon
subclass of: SO_0000010

position:83:1
position: 83
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1258:1
position: 1258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83-1258:1:exon

CACET_RS19255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 84022
locus tag: CACET_RS19255
old locus tag: CACET_5p00010
inference: COORDINATES: protein motif:HMM:NF013603.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein rep
translation: MDEKILKDVRVSKNHLQSVHNNNQYNKLIVGYYNQYIEDSRPVKKKKTILDYTRFTYEDYFVEKLEHKRDKLANCNKKWEVEVYEKLKVKDYVSTLLCNDKFCSNCKKVKQASRMAKNMPLLEQYKDKLYQMVLTTPNIVDHTGEELKKEIKKQFKALTYLTEYLKGKKQVKGLDFDIGYLGAIRSLEVTYSGDYYHPHLHLILVLDNQNEFITDKKNINNYSYDYYKKRPTRLFSDFEILLQKSWYLLYNGERLTKENIDKLEKGYSCMMDKAKEDDFLEVFKYMVKNDPAEENVKGSNKMTYKNFRVLEYALHSIRQIQGYGVFYNIKDILMAEEVNEMYEWIREYLIKNEGEAPAYRVEKIQKLLDDTEYTLISRKKIFTYLRKIYSE
SIO_010081: CACET_RS19255
subclass of: SO_0000673
so part of: CACET_RS19255
location: 83..1258
location: region:83-1258:1
so has part: feature:83-1258:1:exon

WP_052661581.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:83-1258:1:exon

CACET_RS19260
type: Gene
subclass of: SO_0000704
RO_0002162: 84022
gene: tnpA
locus tag: CACET_RS19260
old locus tag: CACET_5p00020
so part of: sequence
location: 1445..1819
location: region:1445-1819:1
so has part: feature:1445-1819:1:exon
subclass of: SO_0000010

position:1445:1
position: 1445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1819:1
position: 1819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1445-1819:1:exon

CACET_RS19260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 84022
gene: tnpA
locus tag: CACET_RS19260
old locus tag: CACET_5p00020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000606463.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS200/IS605 family transposase
translation: MGQDYRRTQTTVSLINYHFVFCPRYRRKVLVGEVEIKFKQLLNEICKDIEIEILAIECDKDHCHLFVNALPHLSPADIMAKVKGVTSRLLRQEFKHLRHLPSLWTRSYFVSTAGNVSSETIKRY
SIO_010081: CACET_RS19260
subclass of: SO_0000673
so part of: CACET_RS19260
location: 1445..1819
location: region:1445-1819:1
so has part: feature:1445-1819:1:exon

WP_048407584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1445-1819:1:exon

CACET_RS19265
type: Gene
subclass of: SO_0000704
RO_0002162: 84022
locus tag: CACET_RS19265
pseudo: true
so part of: sequence
location: 1846..2944
location: region:1846-2944:1
so has part: feature:1846-2944:1:exon
subclass of: SO_0000010

position:1846:1
position: 1846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2944:1
position: 2944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1846-2944:1:exon

CACET_RS19265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 84022
locus tag: CACET_RS19265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011100795.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: CACET_RS19265
subclass of: SO_0000673
so part of: CACET_RS19265
location: 1846..2944
location: region:1846-2944:1
so has part: feature:1846-2944:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1846-2944:1:exon

CACET_RS19270
type: Gene
subclass of: SO_0000704
RO_0002162: 84022
locus tag: CACET_RS19270
old locus tag: CACET_5p00050
so part of: sequence
location: 3072..4085
location: region:3072-4085:1
so has part: feature:3072-4085:1:exon
subclass of: SO_0000010

position:3072:1
position: 3072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4085:1
position: 4085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3072-4085:1:exon

CACET_RS19270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 84022
locus tag: CACET_RS19270
old locus tag: CACET_5p00050
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKHDGHLSVTSEGRLYYAGSQKISFNSGIPLNTGDGVVVWNEIQDLISTSDVYSDVTLTDEIANSNYPNINFEYDGKEPISNPFWDYENLHTGTRSIDIGANPDLSALVGKTYEDVISENPSQQNPMVPPIPFPDSWFGKWKDIVNDSGTWQGEGIDGSTGTAIDSPPLDIPGTWQGKWSWTADGQLVFDGSFSGSDGTTWQGTYTHTGIGVQNPVLNPPLTPDLTGITGWLSSISSWLTSLFAFPTDFSLNLDPLKNLPIATKFPFCLPFDLKNSIESLQSPVVVPVFTTTWNLPFYQGDIEINLAAMERFAQITRWGTLIVFNLGLILVTRKVLS
SIO_010081: CACET_RS19270
subclass of: SO_0000673
so part of: CACET_RS19270
location: 3072..4085
location: region:3072-4085:1
so has part: feature:3072-4085:1:exon

WP_044826347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3072-4085:1:exon

CACET_RS19275
type: Gene
subclass of: SO_0000704
RO_0002162: 84022
locus tag: CACET_RS19275
so part of: sequence
location: 4082..4339
location: region:4082-4339:1
so has part: feature:4082-4339:1:exon
subclass of: SO_0000010

position:4082:1
position: 4082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4339:1
position: 4339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4082-4339:1:exon

CACET_RS19275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 84022
locus tag: CACET_RS19275
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIWQALASFINLLIKALGTVLGAIIGLLPSSPFQTISNSAVTEYLGMLNWFISVDAMITILTYWTTAIISYYVISTAMRWGKTIE
SIO_010081: CACET_RS19275
subclass of: SO_0000673
so part of: CACET_RS19275
location: 4082..4339
location: region:4082-4339:1
so has part: feature:4082-4339:1:exon

WP_052661580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4082-4339:1:exon

CACET_RS19280
type: Gene
subclass of: SO_0000704
RO_0002162: 84022
locus tag: CACET_RS19280
old locus tag: CACET_5p00060
so part of: sequence
location: 4349..5071
location: region:4349-5071:1
so has part: feature:4349-5071:1:exon
subclass of: SO_0000010

position:4349:1
position: 4349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5071:1
position: 5071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4349-5071:1:exon

CACET_RS19280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 84022
locus tag: CACET_RS19280
old locus tag: CACET_5p00060
inference: COORDINATES: protein motif:HMM:NF017518.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zonular occludens toxin domain-containing protein
translation: MISFYSGTPGSGKSLNIARYIWIKVRHAKQNIILVNMTVNREYLITSKLKQLVNKIRLKLKLKPINTKLKDYGKIYSIRLDQLNTKFLEDYAMKFHMVGIEGQSKIIIDEAQLIWSPTVMKNKKQVDPNYRERWIEFMTLHRHLGFDMIIISQFDRLIDAQIRCLFEYNHIHRKVNNFCIGYWLNLFKIKVFAEVQYWYGVRARIGVNFFAITPWTSKHYRKIYNAHKRFSDLKGKKKVA
SIO_010081: CACET_RS19280
subclass of: SO_0000673
so part of: CACET_RS19280
location: 4349..5071
location: region:4349-5071:1
so has part: feature:4349-5071:1:exon

WP_044826348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4349-5071:1:exon

CACET_RS19285
type: Gene
subclass of: SO_0000704
RO_0002162: 84022
locus tag: CACET_RS19285
so part of: sequence
location: 5364..5543
location: region:5364-5543:1
so has part: feature:5364-5543:1:exon
subclass of: SO_0000010

position:5364:1
position: 5364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5543:1
position: 5543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5364-5543:1:exon

CACET_RS19285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 84022
locus tag: CACET_RS19285
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFTRKPETKNKSLVLRMTETQKKILEIMANERGLSQSELIMILLENEFKKPVLEIKQQD
SIO_010081: CACET_RS19285
subclass of: SO_0000673
so part of: CACET_RS19285
location: 5364..5543
location: region:5364-5543:1
so has part: feature:5364-5543:1:exon

WP_044826349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5364-5543:1:exon