Streptomyces tsukubensis strain NRRL 18488 plasmid pSTS2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Ribosome pausing at the AT-rich codon regulates the protein expression of secondary metabolic gene clusters in the Streptomyces tsukubaensis NRRL 18488
Submitted (07-APR-2017) Biological Science, KAIST, 291 Daehak-ro, Daejeon 34141, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP020702.1.\nBacteria and source DNA available from NRRL.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 25-JUL-2016\nAssembly Method :: hierarchical genome assembly process v.\n 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 102.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/03/2023 03:56:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,624\nCDSs (total) :: 6,536\nGenes (coding) :: 6,437\nCDSs (with protein) :: 6,437\nGenes (RNA) :: 88\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 3\nPseudo Genes (total) :: 100\nCDSs (without protein) :: 99\nPseudo Genes (ambiguous residues) :: 0 of 100\nPseudo Genes (frameshifted) :: 16 of 100\nPseudo Genes (incomplete) :: 89 of 100\nPseudo Genes (internal stop) :: 5 of 100\nPseudo Genes (multiple problems) :: 10 of 100\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF039742.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018534227.1
COORDINATES: similar to AA sequence:RefSeq:WP_018534228.1
COORDINATES: similar to AA sequence:RefSeq:WP_006351096.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018534253.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008749710.1
COORDINATES: similar to AA sequence:RefSeq:WP_020555098.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522327.1
COORDINATES: similar to AA sequence:RefSeq:WP_018534234.1
COORDINATES: similar to AA sequence:RefSeq:WP_003949823.1
COORDINATES: protein motif:HMM:NF015620.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018534232.1
COORDINATES: similar to AA sequence:RefSeq:WP_019630207.1
COORDINATES: similar to AA sequence:RefSeq:WP_018534230.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569239.1
COORDINATES: similar to AA sequence:RefSeq:WP_004983360.1
COORDINATES: similar to AA sequence:RefSeq:WP_018534238.1
COORDINATES: similar to AA sequence:RefSeq:WP_018534237.1
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018825591.1
RRQRL motif-containing zinc-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018534241.1
COORDINATES: similar to AA sequence:RefSeq:WP_006351149.1
COORDINATES: similar to AA sequence:RefSeq:WP_019065197.1
COORDINATES: similar to AA sequence:RefSeq:WP_019065198.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF020811.2
COORDINATES: similar to AA sequence:RefSeq:WP_008735061.1