Streptomyces tsukubensis strain NRRL 18488 plasmid pSTS1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Ribosome pausing at the AT-rich codon regulates the protein expression of secondary metabolic gene clusters in the Streptomyces tsukubaensis NRRL 18488
Submitted (07-APR-2017) Biological Science, KAIST, 291 Daehak-ro, Daejeon 34141, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP020701.1.\nBacteria and source DNA available from NRRL.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 25-JUL-2016\nAssembly Method :: hierarchical genome assembly process v.\n 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 102.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/03/2023 03:56:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,624\nCDSs (total) :: 6,536\nGenes (coding) :: 6,437\nCDSs (with protein) :: 6,437\nGenes (RNA) :: 88\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 3\nPseudo Genes (total) :: 100\nCDSs (without protein) :: 99\nPseudo Genes (ambiguous residues) :: 0 of 100\nPseudo Genes (frameshifted) :: 16 of 100\nPseudo Genes (incomplete) :: 89 of 100\nPseudo Genes (internal stop) :: 5 of 100\nPseudo Genes (multiple problems) :: 10 of 100\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024965.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006351120.1
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: similar to AA sequence:RefSeq:WP_015580426.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: similar to AA sequence:RefSeq:WP_020116801.1
COORDINATES: protein motif:HMM:NF019322.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]