Sulfitobacter mediterraneus strain SC7-37 plasmid P5, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Sulfitobacter.
Diatom-associated Roseobacters Show Island Model of Population Structure
Submitted (21-JAN-2021) Biology Department, Shantou University, 243 Daxue Road, Shantou, Guangdong Province 515063, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP069003.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: Flye v. v2.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 850x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:06:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,952\nCDSs (total) :: 3,900\nGenes (coding) :: 3,882\nCDSs (with protein) :: 3,882\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 4 of 18\nPseudo Genes (incomplete) :: 11 of 18\nPseudo Genes (internal stop) :: 6 of 18\nPseudo Genes (multiple problems) :: 2 of 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008188390.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF019846.2
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_011655537.1
COORDINATES: similar to AA sequence:RefSeq:WP_011655536.1
COORDINATES: similar to AA sequence:RefSeq:WP_020009760.1
COORDINATES: similar to AA sequence:RefSeq:WP_011382076.1
COORDINATES: similar to AA sequence:RefSeq:WP_009813974.1
COORDINATES: similar to AA sequence:RefSeq:WP_011537894.1
COORDINATES: protein motif:HMM:NF017183.2
COORDINATES: protein motif:HMM:NF025314.2
COORDINATES: similar to AA sequence:RefSeq:WP_005860315.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536611.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011536612.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536629.1
COORDINATES: protein motif:HMM:NF024860.2
COORDINATES: protein motif:HMM:NF012573.2