Sulfitobacter mediterraneus strain SC7-37 plasmid P3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Sulfitobacter.
Diatom-associated Roseobacters Show Island Model of Population Structure
Submitted (21-JAN-2021) Biology Department, Shantou University, 243 Daxue Road, Shantou, Guangdong Province 515063, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP069002.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: Flye v. v2.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 850x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:06:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,952\nCDSs (total) :: 3,900\nGenes (coding) :: 3,882\nCDSs (with protein) :: 3,882\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 4 of 18\nPseudo Genes (incomplete) :: 11 of 18\nPseudo Genes (internal stop) :: 6 of 18\nPseudo Genes (multiple problems) :: 2 of 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_009829248.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008229681.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009831176.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229791.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009829433.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229809.1
COORDINATES: similar to AA sequence:RefSeq:WP_005849108.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008229650.1
NADPH:quinone oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011047701.1
COORDINATES: similar to AA sequence:RefSeq:WP_005849105.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229748.1
COORDINATES: similar to AA sequence:RefSeq:WP_014881145.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008282439.1
GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020040569.1
COORDINATES: similar to AA sequence:RefSeq:WP_005977258.1
COORDINATES: similar to AA sequence:RefSeq:WP_005861669.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018303261.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008553376.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013963843.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018689003.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007793405.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294604.1
COORDINATES: similar to AA sequence:RefSeq:WP_008560709.1
COORDINATES: similar to AA sequence:RefSeq:WP_011454453.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242177.1
COORDINATES: similar to AA sequence:RefSeq:WP_019962588.1
COORDINATES: similar to AA sequence:RefSeq:WP_008183148.1
GO:0004109 - coproporphyrinogen oxidase activity [Evidence IEA]
oxygen-dependent coproporphyrinogen oxidase
COORDINATES: protein motif:HMM:NF018053.2
COORDINATES: similar to AA sequence:RefSeq:WP_009827172.1
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_011049477.1
part of the dimethylsulfoniopropionate catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010914467.1
COORDINATES: similar to AA sequence:RefSeq:WP_009810958.1
COORDINATES: similar to AA sequence:RefSeq:WP_018688082.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0016114 - terpenoid biosynthetic process [Evidence IEA]
1-deoxy-D-xylulose-5-phosphate synthase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008208393.1
COORDINATES: similar to AA sequence:RefSeq:WP_008208392.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_008561282.1
GO:0018826 - methionine gamma-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014880073.1
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF025461.2
COORDINATES: similar to AA sequence:RefSeq:WP_009827972.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824289.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005848873.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009827411.1
COORDINATES: similar to AA sequence:RefSeq:WP_007226830.1
COORDINATES: similar to AA sequence:RefSeq:WP_009831066.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783601.1
COORDINATES: similar to AA sequence:RefSeq:WP_010234427.1
COORDINATES: similar to AA sequence:RefSeq:WP_005848859.1
COORDINATES: similar to AA sequence:RefSeq:WP_009829697.1
GO:0030729 - acetoacetate-CoA ligase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005983089.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011474577.1
COORDINATES: similar to AA sequence:RefSeq:WP_005848852.1
COORDINATES: similar to AA sequence:RefSeq:WP_009829897.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229654.1
COORDINATES: similar to AA sequence:RefSeq:WP_009829423.1
branched-chain amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009829065.1