Sulfitobacter mediterraneus strain SC7-37 plasmid P2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Sulfitobacter.
Diatom-associated Roseobacters Show Island Model of Population Structure
Submitted (21-JAN-2021) Biology Department, Shantou University, 243 Daxue Road, Shantou, Guangdong Province 515063, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP069001.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: Flye v. v2.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 850x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:06:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,952\nCDSs (total) :: 3,900\nGenes (coding) :: 3,882\nCDSs (with protein) :: 3,882\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 4 of 18\nPseudo Genes (incomplete) :: 11 of 18\nPseudo Genes (internal stop) :: 6 of 18\nPseudo Genes (multiple problems) :: 2 of 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003548559.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008887531.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887540.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573265.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120639.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807542.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819689.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827088.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009820261.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803666.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827092.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007284653.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815525.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009503770.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803581.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187346.1
COORDINATES: protein motif:HMM:NF016107.2
phosphatidylethanolamine N-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015500975.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF018949.2
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008890414.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009826999.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536569.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120663.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807938.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009803679.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009808070.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187333.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808068.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807515.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327387.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807513.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_009807512.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820232.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859624.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009807508.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327373.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_009808058.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803469.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187165.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803698.1
COORDINATES: similar to AA sequence:RefSeq:WP_009032048.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012606173.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025063.2
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009827437.1
GO:0045275 - respiratory chain complex III [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
ubiquinol-cytochrome c reductase iron-sulfur subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013959928.1
COORDINATES: similar to AA sequence:RefSeq:WP_005619223.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020043298.1
COORDINATES: similar to AA sequence:RefSeq:WP_019298028.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443172.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807478.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_008327266.1
COORDINATES: similar to AA sequence:RefSeq:WP_009159866.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803380.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018065802.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065816.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803401.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803403.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812408.1
COORDINATES: similar to AA sequence:RefSeq:WP_009814391.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065820.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242139.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187182.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808001.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803387.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808006.1
DsbE family thiol:disulfide interchange protein
COORDINATES: similar to AA sequence:RefSeq:WP_006700325.1
cytochrome c-type biogenesis protein CcmH
COORDINATES: protein motif:HMM:TIGR03142.1
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
c-type cytochrome biogenesis protein CcmI
COORDINATES: protein motif:HMM:NF022853.2
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009808010.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959915.1
COORDINATES: similar to AA sequence:RefSeq:WP_009452565.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013959913.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959912.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013959908.1
COORDINATES: similar to AA sequence:RefSeq:WP_008330690.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187492.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820151.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187181.1
COORDINATES: similar to AA sequence:RefSeq:WP_008234944.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803438.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_012187317.1
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:NF016915.2
COORDINATES: similar to AA sequence:RefSeq:WP_013832760.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007011034.1
COORDINATES: similar to AA sequence:RefSeq:WP_011655392.1
TerB N-terminal domain-containing protein