Sulfitobacter mediterraneus strain SC7-37 plasmid P4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Sulfitobacter.
Diatom-associated Roseobacters Show Island Model of Population Structure
Submitted (21-JAN-2021) Biology Department, Shantou University, 243 Daxue Road, Shantou, Guangdong Province 515063, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP069000.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: Flye v. v2.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 850x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:06:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,952\nCDSs (total) :: 3,900\nGenes (coding) :: 3,882\nCDSs (with protein) :: 3,882\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 4 of 18\nPseudo Genes (incomplete) :: 11 of 18\nPseudo Genes (internal stop) :: 6 of 18\nPseudo Genes (multiple problems) :: 2 of 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005659081.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007120755.1
COORDINATES: similar to AA sequence:RefSeq:WP_007197939.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335934.1
indolepyruvate ferredoxin oxidoreductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_008226276.1
indolepyruvate oxidoreductase subunit beta family protein
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF013767.2
COORDINATES: protein motif:HMM:NF024376.2
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005849072.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824326.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824327.1
COORDINATES: similar to AA sequence:RefSeq:WP_007254899.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009824329.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005849061.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824332.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824333.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824334.1
COORDINATES: similar to AA sequence:RefSeq:WP_005849053.1
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly.; The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar type III secretion system pore protein FliP
COORDINATES: similar to AA sequence:RefSeq:WP_009803969.1
FliM/FliN family flagellar motor switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_005849051.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824337.1
GO:0009431 - bacterial-type flagellum basal body, MS ring [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
flagellar basal-body MS-ring/collar protein FliF
COORDINATES: similar to AA sequence:RefSeq:WP_009824338.1
flagellar basal body-associated FliL family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005849047.1
COORDINATES: similar to AA sequence:RefSeq:WP_005849045.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824340.1
COORDINATES: similar to AA sequence:RefSeq:WP_005849043.1
flagellar type III secretion system protein FlhB
COORDINATES: similar to AA sequence:RefSeq:WP_005849041.1
GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009824341.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005849035.1
COORDINATES: similar to AA sequence:RefSeq:WP_005849033.1
GO:0003774 - cytoskeletal motor activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
flagellar hook-basal body complex protein FliE
COORDINATES: similar to AA sequence:RefSeq:WP_007254861.1
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005849029.1
COORDINATES: similar to AA sequence:RefSeq:WP_005849027.1
GO:0030257 - type III protein secretion system complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0046034 - ATP metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009803976.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824347.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824348.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803969.1
flagellar basal body P-ring protein FlgI
COORDINATES: similar to AA sequence:RefSeq:WP_009803982.1
COORDINATES: similar to AA sequence:RefSeq:WP_005849020.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824352.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009824353.1
flagellar hook-basal body complex protein
COORDINATES: protein motif:HMM:TIGR03506.1
COORDINATES: similar to AA sequence:RefSeq:WP_005849013.1
GO:0009426 - bacterial-type flagellum basal body, distal rod [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005849011.1
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]
flagellar basal body P-ring formation chaperone FlgA
COORDINATES: similar to AA sequence:RefSeq:WP_017929506.1
flagellar basal body L-ring protein FlgH
COORDINATES: similar to AA sequence:RefSeq:WP_005849008.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824358.1
flagellar hook capping FlgD N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014207.2
flagellar hook-length control protein FliK
COORDINATES: similar to AA sequence:RefSeq:WP_005849004.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_007121185.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008335932.1
COORDINATES: protein motif:HMM:NF014068.2
COORDINATES: similar to AA sequence:RefSeq:WP_012492787.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008189745.1
COORDINATES: similar to AA sequence:RefSeq:WP_009158891.1
COORDINATES: similar to AA sequence:RefSeq:WP_010442633.1
COORDINATES: similar to AA sequence:RefSeq:WP_007196348.1
COORDINATES: similar to AA sequence:RefSeq:WP_010442635.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_010442636.1
COORDINATES: similar to AA sequence:RefSeq:WP_007196351.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010442648.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_011046579.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015499942.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229782.1
COORDINATES: similar to AA sequence:RefSeq:WP_010442644.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229500.1
COORDINATES: similar to AA sequence:RefSeq:WP_011455170.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011046570.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007196344.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010442640.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088717.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009522897.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443155.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008229260.1
COORDINATES: protein motif:HMM:NF013965.2
COORDINATES: similar to AA sequence:RefSeq:WP_015452271.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008226859.1
COORDINATES: similar to AA sequence:RefSeq:WP_008225391.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_008224915.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_009504818.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504820.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887893.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009572562.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120750.1
COORDINATES: similar to AA sequence:RefSeq:WP_015314083.1
COORDINATES: similar to AA sequence:RefSeq:WP_006931345.1
COORDINATES: similar to AA sequence:RefSeq:WP_013527971.1