Cupriavidus gilardii strain FDAARGOS_639 plasmid unnamed1, complete sequence.
type: Entry
definition: Cupriavidus gilardii strain FDAARGOS_639 plasmid unnamed1, complete sequence.
sequence version: NZ_CP054625.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP054625.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11056354
keyword: RefSeq
source: Cupriavidus gilardii
organism: Cupriavidus gilardii
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP054625.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 1.4\nGenome Coverage :: 656.77x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 03:26:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,210\nCDSs (total) :: 5,134\nGenes (coding) :: 5,050\nCDSs (with protein) :: 5,050\nGenes (RNA) :: 76\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 3\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 27 of 84\nPseudo Genes (incomplete) :: 62 of 84\nPseudo Genes (internal stop) :: 9 of 84\nPseudo Genes (multiple problems) :: 11 of 84\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 33330
topology: circular
so has quality: SO_0000988
location: 1..33330
location: region:1-33330:1
RO_0002162: 82541

NZ_CP054625
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11056354
type: BioSample
SIO_000068: biosample

1
title: FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
author: Sciortino, C.
author: Tallon, L.
author: Sadzewicz, L.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Nandy, P.
author: Geyer, C.
author: Yan, Y.
author: Sichtig, H.
journal: Unpublished

2
title: Direct Submission
author: Sciortino, C.
author: Tallon, L.
author: Sadzewicz, L.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Nandy, P.
author: Geyer, C.
author: Yan, Y.
author: Sichtig, H.
journal: Submitted (28-MAY-2020) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33330:1
position: 33330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-33330:1:source
so part of: sequence
organism: Cupriavidus gilardii
mol type: genomic DNA
strain: FDAARGOS_639
isolation source: clinical isolate
host: Homo sapiens
culture collection: FDA:FDAARGOS_639
plasmid: unnamed1
country: USA: KY
collected by: University of Louisville

82541
type: Taxonomy
SIO_000068: taxonomy

FOB47_RS10095
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10095
old locus tag: FOB47_10095
pseudo: true
so part of: sequence
location: complement(join(33200..33330,1..344))
location: region:1-33330:-1
so has part: feature:1-344:-1:exon
so has part: feature:33200-33330:-1:exon
subclass of: SO_0000010

70688687
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33330:-1
position: 33330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-344:-1:exon

position:344:-1
position: 344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:33200-33330:-1:exon

position:33200:-1
position: 33200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FOB47_RS10095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10095
old locus tag: FOB47_10095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018313763.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: YbaK/EbsC family protein
SIO_010081: FOB47_RS10095
subclass of: SO_0000673
so part of: FOB47_RS10095
location: complement(join(33200..33330,1..344))
location: region:1-33330:-1
so has part: feature:1-344:-1:exon
so has part: feature:33200-33330:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-344:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:33200-33330:-1:exon

FOB47_RS10100
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10100
old locus tag: FOB47_10100
so part of: sequence
location: complement(576..878)
location: region:576-878:-1
so has part: feature:576-878:-1:exon
subclass of: SO_0000010

70688688
type: Gene
SIO_000068: ncbigene

position:576:-1
position: 576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:878:-1
position: 878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:576-878:-1:exon

FOB47_RS10100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10100
old locus tag: FOB47_10100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTATATSLCLAALLALPLAAQADPWKDESGHGKWRGHHHGGDYKEEYWTATARSNASSRQRRLQGRAQVQGPRYGYYGPAPVYVEPARSMCRRASPCMAP
SIO_010081: FOB47_RS10100
subclass of: SO_0000673
so part of: FOB47_RS10100
location: complement(576..878)
location: region:576-878:-1
so has part: feature:576-878:-1:exon

WP_244959325.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:576-878:-1:exon

FOB47_RS10105
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10105
old locus tag: FOB47_10105
so part of: sequence
location: complement(1044..1129)
location: region:1044-1129:-1
so has part: feature:1044-1129:-1:exon
subclass of: SO_0000663

70688689
type: Gene
SIO_000068: ncbigene

position:1044:-1
position: 1044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1129:-1
position: 1129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1044-1129:-1:exon

FOB47_RS10105
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 82541
locus tag: FOB47_RS10105
old locus tag: FOB47_10105
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(1093..1095),aa:Leu,seq:tag)
SIO_010081: FOB47_RS10105
subclass of: SO_0000673
so part of: FOB47_RS10105
location: complement(1044..1129)
location: region:1044-1129:-1
so has part: feature:1044-1129:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1044-1129:-1:exon

FOB47_RS10110
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10110
old locus tag: FOB47_10110
pseudo: true
so part of: sequence
location: complement(1359..4465)
location: region:1359-4465:-1
so has part: feature:1359-4465:-1:exon
subclass of: SO_0000010

70688690
type: Gene
SIO_000068: ncbigene

position:1359:-1
position: 1359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4465:-1
position: 4465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1359-4465:-1:exon

FOB47_RS10110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10110
old locus tag: FOB47_10110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019448404.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: efflux RND transporter permease subunit
SIO_010081: FOB47_RS10110
subclass of: SO_0000673
so part of: FOB47_RS10110
location: complement(1359..4465)
location: region:1359-4465:-1
so has part: feature:1359-4465:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1359-4465:-1:exon

FOB47_RS10115
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10115
old locus tag: FOB47_10115
so part of: sequence
location: complement(4476..5609)
location: region:4476-5609:-1
so has part: feature:4476-5609:-1:exon
subclass of: SO_0000010

70688691
type: Gene
SIO_000068: ncbigene

position:4476:-1
position: 4476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5609:-1
position: 5609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4476-5609:-1:exon

FOB47_RS10115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10115
old locus tag: FOB47_10115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013956477.1
GO function: GO:0005215 - transporter activity [Evidence IEA]
GO process: GO:0006810 - transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: efflux RND transporter periplasmic adaptor subunit
translation: MVLPCLLALLVLGGCSREPERAPDVRPVRLLQLQSATGQSAYEFSGDVRPRIESRLGFRVGGKIAARLVDVGATVRRGQPLARLDPTDLNLAEQGSRAQYEAARTDRDLAAADLKRYNDLFAKGFISAAEQNRRQASYEAAAARLRQAEAALREQSNQTGYTVLAADADGVVTAIDAEVGQVVSAGQSVVRVAQTAEKEVAIGLPEDQVDWLRDIRDVSVRTWAEPERRLPGRVREIAAAADPVTRTYAARITVPNPPADLKFGMTAMVTFVRTGASPAVRVPLTALLQQQGSNQVWVYDSAAGTVQPVAVTLGQPIGNEVEVSSGLRPGQTIVTAGVHLLKPGQKVRPLQAVAPASAPVPAATPANPPASAPAARS
SIO_010081: FOB47_RS10115
subclass of: SO_0000673
so part of: FOB47_RS10115
location: complement(4476..5609)
location: region:4476-5609:-1
so has part: feature:4476-5609:-1:exon

WP_244959327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4476-5609:-1:exon

FOB47_RS10120
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
gene: hpnC
locus tag: FOB47_RS10120
old locus tag: FOB47_10120
so part of: sequence
location: 6079..6966
location: region:6079-6966:1
so has part: feature:6079-6966:1:exon
subclass of: SO_0000010

70688692
type: Gene
SIO_000068: ncbigene

position:6079:1
position: 6079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6966:1
position: 6966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6079-6966:1:exon

FOB47_RS10120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
gene: hpnC
locus tag: FOB47_RS10120
old locus tag: FOB47_10120
EC number: 2.5.1.21
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006578559.1
GO function: GO:0004311 - farnesyltranstransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: squalene synthase HpnC
translation: MPDAPAAAEGDVVDHYENFPVASVLLPRPLRRPVAVIYRFARTADDLADEGDAAPAERLAALGALSDALERIGAGTDPGTPMMRALAEVIAEYRLPLPLFHDLLDAFRQDVTVHRHADWDSLLDYSRRSANPVGRLMLHLYGAATPDRFARADAICTGLQLVNFWQDVAIDFARGRIYLPADAMARHGVDENALAEGRCDVRWLALMEELKIRTEAMLQSGASLALDLPRTVDWRIGWELRLVVQGGLRVLERIEAVGYDVFRRRPTLGPADWLLLAWRAAARYRSGTAPSKPAH
SIO_010081: FOB47_RS10120
subclass of: SO_0000673
so part of: FOB47_RS10120
location: 6079..6966
location: region:6079-6966:1
so has part: feature:6079-6966:1:exon

WP_053821934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6079-6966:1:exon

FOB47_RS10125
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
gene: hpnD
locus tag: FOB47_RS10125
old locus tag: FOB47_10125
so part of: sequence
location: 7063..7899
location: region:7063-7899:1
so has part: feature:7063-7899:1:exon
subclass of: SO_0000010

70688693
type: Gene
SIO_000068: ncbigene

position:7063:1
position: 7063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7899:1
position: 7899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7063-7899:1:exon

FOB47_RS10125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
gene: hpnD
locus tag: FOB47_RS10125
old locus tag: FOB47_10125
EC number: 2.5.1.103
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006578558.1
GO function: GO:0016767 - geranylgeranyl-diphosphate geranylgeranyltransferase activity [Evidence IEA]
GO process: GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: presqualene diphosphate synthase HpnD
translation: MTPDQYCQDKAAQSGSSFYYSFLFLPPERRRAITALYAWCREVDDVVDETQDLTVAQQQLAWWHGELKRLFAGEPTHPTTLALQPHLASCGLTQPMLAEVLEGMEMDLMQTRYLDEAGLDRYCHCVAGVVGTMSARIFGYRDPRTLEFAEKLGRSLQLVNIIRDVGEDARRGRLYLPVNVLQRFEVPAADIMQGRHSPRFVALMQYHAERARTFYREALALLPDSDRRAQRAGLLMGAIYHALLDEIEASGFQVLNQRISLTPMRKLWIAWKTWIRNR
SIO_010081: FOB47_RS10125
subclass of: SO_0000673
so part of: FOB47_RS10125
location: 7063..7899
location: region:7063-7899:1
so has part: feature:7063-7899:1:exon

WP_053821935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7063-7899:1:exon

FOB47_RS10130
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
gene: hpnE
locus tag: FOB47_RS10130
old locus tag: FOB47_10130
so part of: sequence
location: 7872..9422
location: region:7872-9422:1
so has part: feature:7872-9422:1:exon
subclass of: SO_0000010

70688694
type: Gene
SIO_000068: ncbigene

position:7872:1
position: 7872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9422:1
position: 9422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7872-9422:1:exon

FOB47_RS10130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
gene: hpnE
locus tag: FOB47_RS10130
old locus tag: FOB47_10130
EC number: 1.17.8.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019920999.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydroxysqualene dehydroxylase HpnE
translation: MEDVDTQPLNTAMAERAATPAATPAATSPRAGDAVGAAGAVGIIGGGWAGMAAALELAQAGRVVHVFEAAPVLGGRARRVARRHPQVAGELDNGQHLLLGAYRHTLALMRRAGVDPDAALLRLPLQMAYADGWRLQAPRLPAPWHLLGMGLTARGLGWRERAALAQALSRLRAASDDDDAADTDGAGANIGGETVAAWLAQAPSSLRERLWFPLCVAALNTPAEQADARVFRRVLRDSLLAARGDSDMLVPRRDLSRLFPEAAAHAIVAAGGTVRTGAAVQAISQSPHGWLLQTHAGRQEVAQLVVATAPRQAARLLAQVPHGPHQAALQAAAAKLQAFDHVPIVTLYLNVGALRLPRPFLALDASAAAPGQFVFDRAALSTEPRASAAPDHDNVWSVVISAADDAAALPQAELARRVRAQLATQLAPWIAGAAHLADARGEFVIAERLATFRCIPGLARPGNDIGVPRLALAGDYTDGRDGAYGPYPATIEAATRSGSAAAALLQRERVPSAATA
SIO_010081: FOB47_RS10130
subclass of: SO_0000673
so part of: FOB47_RS10130
location: 7872..9422
location: region:7872-9422:1
so has part: feature:7872-9422:1:exon

WP_244959326.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7872-9422:1:exon

FOB47_RS10135
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10135
old locus tag: FOB47_10135
so part of: sequence
location: 9458..10720
location: region:9458-10720:1
so has part: feature:9458-10720:1:exon
subclass of: SO_0000010

70688695
type: Gene
SIO_000068: ncbigene

position:9458:1
position: 9458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10720:1
position: 10720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9458-10720:1:exon

FOB47_RS10135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10135
old locus tag: FOB47_10135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013956475.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Zn-dependent hydrolase
translation: MHSPSPSLGQSILDAAEALARFSDMEGGLTCAYLTPAHRAAAAMLAERMRAAGMQVRVDAIGNVIGRYEADPSAGPDAKVLMTGSHFDTVRNGGRYDGRLGILLPIAVVGALNEAGIRLPYHFEVVGFAEEEGLRFKTSFLASSALAGRFDPALLARADADGITLAQALAQSDLPGGGDPEALRAAAVDPATLLAFVEVHIEQGPVLLHHDLPLGIVTQIAGSSRFQVRVEGLASHAGTTPMTMRKDAAAAAAEMVLLVESRCAQAPTLVGTVGQLQVPNGSSNVIPAACHFSMDIRAGEDAVRESAIADIVAGIEAIAARRGVRAEVERVPPVNNAPCAPWLREQFAAVLNKRGLQAFELPSGAGHDAMMMQRITDVAMLFVRCGNGGISHNPLETITAEDAQLAAEVFVDFLRHFRPR
SIO_010081: FOB47_RS10135
subclass of: SO_0000673
so part of: FOB47_RS10135
location: 9458..10720
location: region:9458-10720:1
so has part: feature:9458-10720:1:exon

WP_174780996.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9458-10720:1:exon

FOB47_RS10140
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10140
old locus tag: FOB47_10140
so part of: sequence
location: complement(10881..11270)
location: region:10881-11270:-1
so has part: feature:10881-11270:-1:exon
subclass of: SO_0000010

70688696
type: Gene
SIO_000068: ncbigene

position:10881:-1
position: 10881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11270:-1
position: 11270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10881-11270:-1:exon

FOB47_RS10140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10140
old locus tag: FOB47_10140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012352658.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAKSTRSEPRRASGARRRVAGALLALLLPSMLLHAASASAQSPGLGALLQGHARHPGRGAEGYPGHPGHARQDRERPSPRESRGRANRQRAEREAGERQGRSGKLSADERRKLRQSLYDISREMYQGN
SIO_010081: FOB47_RS10140
subclass of: SO_0000673
so part of: FOB47_RS10140
location: complement(10881..11270)
location: region:10881-11270:-1
so has part: feature:10881-11270:-1:exon

WP_174780983.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10881-11270:-1:exon

FOB47_RS10145
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
gene: ompR
locus tag: FOB47_RS10145
old locus tag: FOB47_10145
so part of: sequence
location: 11476..12198
location: region:11476-12198:1
so has part: feature:11476-12198:1:exon
subclass of: SO_0000010

70688697
type: Gene
SIO_000068: ncbigene

position:11476:1
position: 11476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12198:1
position: 12198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11476-12198:1:exon

FOB47_RS10145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
gene: ompR
locus tag: FOB47_RS10145
old locus tag: FOB47_10145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019427970.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: two-component system response regulator OmpR
translation: MENTSHKILVVDDDPRLRDLLRRYLGEQGFTVLVAENATAMNKLWLRERFDLLVLDLMMPGEDGLSICRRLRGANDQTPIIMLTAKGEDVDRIVGLEMGADDYLPKPFNPRELIARIHAVLRRKGPAEVPGAPSETPETFAFGDFVLNLATRTLTKNDEEITLTTGEFSVLKVFARHPRQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPGNPRFIQTVWGLGYVFIPDGVK
SIO_010081: FOB47_RS10145
subclass of: SO_0000673
so part of: FOB47_RS10145
location: 11476..12198
location: region:11476-12198:1
so has part: feature:11476-12198:1:exon

WP_006576352.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11476-12198:1:exon

FOB47_RS10150
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10150
old locus tag: FOB47_10150
so part of: sequence
location: 12214..13563
location: region:12214-13563:1
so has part: feature:12214-13563:1:exon
subclass of: SO_0000010

70688698
type: Gene
SIO_000068: ncbigene

position:12214:1
position: 12214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13563:1
position: 13563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12214-13563:1:exon

FOB47_RS10150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10150
old locus tag: FOB47_10150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013956473.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MATVIRRTATRFFGSLFWRTFMLIALLLAISLGIWFQSYRLFERAPRAQQIAMQVVSVVKLTRAALLYSDPARRRFLLLDLVQNEGIKVYPRERDDDFTTPTANPFLTQLVQQEIRGRLGGDTVIATTVNDIPGVWVSFEIEGDDYWVAISPERFERVPGLQWLWWTVAALLLSIFGAAFITARVNRPLKRLADAARAIGSGGDPPPLPERGASEVAQANHSFNQMVRDLRQLDDDRVVMLAGISHDLRTPLTRLRLETEMSPVDDSTREAMIADIEQMDAIIGQFLNYARPAQESSEPVDLSSLVRDAVNVYAAHDDIRIRVHAPEPVMAMANRMEVQRILDNLVENARRYAKDPDSGIAEVEITTRNHDKEAMLVVADRGDGVPDAQLPLLTRPFYRLDAARSEAKGAGLGMSIVNRIMQRNGGRLVLTNRPAPGSGLVVSACFRRA
SIO_010081: FOB47_RS10150
subclass of: SO_0000673
so part of: FOB47_RS10150
location: 12214..13563
location: region:12214-13563:1
so has part: feature:12214-13563:1:exon

WP_151022413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12214-13563:1:exon

FOB47_RS10155
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10155
old locus tag: FOB47_10155
so part of: sequence
location: 13900..14448
location: region:13900-14448:1
so has part: feature:13900-14448:1:exon
subclass of: SO_0000010

70688699
type: Gene
SIO_000068: ncbigene

position:13900:1
position: 13900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14448:1
position: 14448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13900-14448:1:exon

FOB47_RS10155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10155
old locus tag: FOB47_10155
EC number: 1.11.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004192241.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peroxiredoxin
translation: MKTVGDKLEPFHVVGVKPGFNAHEENGQSAFEDITEKSFEGKWKIIYFYPKDFTFVCPTEIVAFAKLNQDFADRDAVVLGGSTDNEFVKLAWRREHKDLNKLNSWQFADTTGSLIDQLGVREKDAGVALRATFIVDPDNTIQHVSVNNLNVGRNPDEILRILDGLQTDELCPCNRAVGGATL
SIO_010081: FOB47_RS10155
subclass of: SO_0000673
so part of: FOB47_RS10155
location: 13900..14448
location: region:13900-14448:1
so has part: feature:13900-14448:1:exon

WP_053823112.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13900-14448:1:exon

FOB47_RS10160
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10160
old locus tag: FOB47_10160
so part of: sequence
location: 14558..15079
location: region:14558-15079:1
so has part: feature:14558-15079:1:exon
subclass of: SO_0000010

70688700
type: Gene
SIO_000068: ncbigene

position:14558:1
position: 14558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15079:1
position: 15079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14558-15079:1:exon

FOB47_RS10160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10160
old locus tag: FOB47_10160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006155913.1
GO function: GO:0051920 - peroxiredoxin activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carboxymuconolactone decarboxylase family protein
translation: MEFLNTIKNLIPDYAKDIRLNLDGTIARSSLEGNDAVGVALAAAFAAKSKIIVDAIRNAGVLSPEELNGALTAAALMGMNNVWYPYVEMAADPDLASQPAGLRMNAYATHGGVDKRRFEMYALAASIVGKCHFCVRSHYELLKNEQGMTSQQLRDVGRIAAVITAAANVIAAE
SIO_010081: FOB47_RS10160
subclass of: SO_0000673
so part of: FOB47_RS10160
location: 14558..15079
location: region:14558-15079:1
so has part: feature:14558-15079:1:exon

WP_053821939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14558-15079:1:exon

FOB47_RS10165
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10165
old locus tag: FOB47_10165
so part of: sequence
location: 15261..15836
location: region:15261-15836:1
so has part: feature:15261-15836:1:exon
subclass of: SO_0000010

70688701
type: Gene
SIO_000068: ncbigene

position:15261:1
position: 15261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15836:1
position: 15836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15261-15836:1:exon

FOB47_RS10165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10165
old locus tag: FOB47_10165
EC number: 2.3.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020201243.1
GO function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MSQLPSPSSPHFHYRLATASDWGQIAAVTQEAYAQYELEIMEDCRASFQQGMRSVLATNTSDMEWWVADTDHGISGAVLFCHPGATLQALDGSTVTLALPEARLLSVSPQARGLGLGRTLMQICIERARDIGAQALVVRTMPEMGAANRLCQQMGFVKRTEAGARSGPLERLVDYVYAIEPKEADAPQPGL
SIO_010081: FOB47_RS10165
subclass of: SO_0000673
so part of: FOB47_RS10165
location: 15261..15836
location: region:15261-15836:1
so has part: feature:15261-15836:1:exon

WP_174780984.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15261-15836:1:exon

FOB47_RS10170
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
gene: ispF
locus tag: FOB47_RS10170
old locus tag: FOB47_10170
so part of: sequence
location: complement(15888..16397)
location: region:15888-16397:-1
so has part: feature:15888-16397:-1:exon
subclass of: SO_0000010

70688702
type: Gene
SIO_000068: ncbigene

position:15888:-1
position: 15888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16397:-1
position: 16397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15888-16397:-1:exon

FOB47_RS10170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
gene: ispF
locus tag: FOB47_RS10170
old locus tag: FOB47_10170
EC number: 4.6.1.12
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018004464.1
GO function: GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity [Evidence IEA]
GO process: GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
translation: MMPFDIRVGQGYDVHALVPGRKLVLGGVEIPHDRGLLGHSDADALLHAITDALFGAAALGDIGRHFPDTDPAFAGADSRALLREAVRRVREAGYEVGNVDATVIAQAPKLAPHIGAMVANLAEDLGIAAGRCNVKAKTNEKLGFEGRQEGIVAQAVVLLWRGAIVAPQD
SIO_010081: FOB47_RS10170
subclass of: SO_0000673
so part of: FOB47_RS10170
location: complement(15888..16397)
location: region:15888-16397:-1
so has part: feature:15888-16397:-1:exon

WP_174780985.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15888-16397:-1:exon

FOB47_RS10175
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
gene: ispD
locus tag: FOB47_RS10175
old locus tag: FOB47_10175
so part of: sequence
location: complement(16394..17185)
location: region:16394-17185:-1
so has part: feature:16394-17185:-1:exon
subclass of: SO_0000010

70688703
type: Gene
SIO_000068: ncbigene

position:16394:-1
position: 16394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17185:-1
position: 17185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16394-17185:-1:exon

FOB47_RS10175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
gene: ispD
locus tag: FOB47_RS10175
old locus tag: FOB47_10175
EC number: 2.7.7.60
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006576347.1
GO function: GO:0050518 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity [Evidence IEA]
GO process: GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
translation: MSERRFALIPCAGSGSRAGAGLPKQYRELAGHPMIWYALAAFSACESISATALVLAPDDLPLEARFGSAAFAGLRFDTAFVGGSSRHESVLNGLRHLVQLGAEDQDWVLVHDAARPGLTPLMIDTLIRAVEGDDGDGPDAAIGGILAVPVPDTLKRADAEPLHPSQPSRIGGTVPREGLWQAQTPQMFRVGVLRQALEDALASGAVVTDEASAIERLGLKPRLVNGSLRNFKVTYPEDFALAEVLLGGQPAAASSGSSGDRPR
SIO_010081: FOB47_RS10175
subclass of: SO_0000673
so part of: FOB47_RS10175
location: complement(16394..17185)
location: region:16394-17185:-1
so has part: feature:16394-17185:-1:exon

WP_174780986.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16394-17185:-1:exon

FOB47_RS10180
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
gene: mfd
locus tag: FOB47_RS10180
old locus tag: FOB47_10180
so part of: sequence
location: 17347..20832
location: region:17347-20832:1
so has part: feature:17347-20832:1:exon
subclass of: SO_0000010

70688704
type: Gene
SIO_000068: ncbigene

position:17347:1
position: 17347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20832:1
position: 20832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17347-20832:1:exon

FOB47_RS10180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
gene: mfd
locus tag: FOB47_RS10180
old locus tag: FOB47_10180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013956466.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcription-repair coupling factor
translation: MSDANSPPALPVSTQLPLVKAGQRHQITGLHGSADALALAAYARAHHDKTHGQMPMLAVICANAVDAQRLADEIPWFAPELRVRVLPDWETLPYDSFSPHQDLVSERLATLHDIQTGQCDVMLVPAQTALYRLAPPAFLAAYTFFFKQGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSALPYRIDLFGDEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDEAARTAFRGRWREVFEGDPSKSPIYKDIGNGVPSAGIEYYLPLFFESAATLFDYLPAGTHLAYVGAIDEAIRRFWTDTQQRYDFMRHDRERPLLPPAQLFLNEEQFFSAAKPLARLVLQQGPAGADAVPLSAALPDVSVNRRAEDPLVNLEALLLRKQARVLMCADSAGRRETLLQLFADSGLRPHPVEDCAAFLAGDATFAIAVAPLQSGFVLPGADGHPDLAFVTEAELYANTARRAGRRKQEQASSVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVTLDMGQGDEEFLHLDYDKGSKLYVPVHQLHVISRYSGADPETAPLHSLGSGQWERAKRRAAQQIRDTAAELLNLYARRALREGHAFALSPKDYETFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHFQTLSDRFADWPVRIVELSRFKTKKEVEAAIKQINDGTVDIVIGTHKLLSDDVRFQRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVLREAILRELKRGGQVYFLHNEVETIENKRARLAELVPEARIAVAHGQMHERELERVMRDFVARRANILLCTTIIETGIDVPSANTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKALKAGKEPDLMAPLAATTEINLGTPALLPNDYCTDVHERLSLYKRLANCERPEQVDDIHEELVDRFGRPPAQAQALIETHRLRIAAVPLGVRKIDAGEASISVQFVPNPPIDAIRIIDLVQKNRHIKLAGQDKLRIEAKMPDVAVRAQTIKQMLRQLA
SIO_010081: FOB47_RS10180
subclass of: SO_0000673
so part of: FOB47_RS10180
location: 17347..20832
location: region:17347-20832:1
so has part: feature:17347-20832:1:exon

WP_174780987.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17347-20832:1:exon

FOB47_RS10185
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
gene: argE
locus tag: FOB47_RS10185
old locus tag: FOB47_10185
so part of: sequence
location: 20921..22135
location: region:20921-22135:1
so has part: feature:20921-22135:1:exon
subclass of: SO_0000010

70688705
type: Gene
SIO_000068: ncbigene

position:20921:1
position: 20921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22135:1
position: 22135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20921-22135:1:exon

FOB47_RS10185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
gene: argE
locus tag: FOB47_RS10185
old locus tag: FOB47_10185
EC number: 3.5.1.16
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006155917.1
GO function: GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO process: GO:0006592 - ornithine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetylornithine deacetylase
translation: MPAHTPAPTDAFTDIPEHAALDWTRRLIEFDTTSRESNLGLIETVRDHFAARGLKPHLSYNPQRNKANLHVTVPAADGSEQRGIVLSGHTDVVPVDGQDWSTDPFRPALRDGKLYGRGACDMKGFIGTSLALLPTLLQARLREPVHYALSFDEEVGCMGAPYLIDDLRERGIQPAGCIVGEPTSMRVIVAHKGINAYRCCVKGQAAHSSLTPRGVNAIEYAARLICFIRDLADEFRAKGPYDDAFDVPFTTASTGTIQGGIALNTIPALCEFVFEYRNLPGVDPEAIRARIEAYANDVLLPRMRAEHADADLSITRIAAAPALDAAERDAITQLVRALTGDNAISKVAYATEGGLFQRAGIPAVVCGPGDIQQAHKADEFVALEQLAQCEAFLHKVVDSLRLAA
SIO_010081: FOB47_RS10185
subclass of: SO_0000673
so part of: FOB47_RS10185
location: 20921..22135
location: region:20921-22135:1
so has part: feature:20921-22135:1:exon

WP_174780988.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20921-22135:1:exon

FOB47_RS10190
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10190
old locus tag: FOB47_10190
so part of: sequence
location: 22320..23753
location: region:22320-23753:1
so has part: feature:22320-23753:1:exon
subclass of: SO_0000010

70688706
type: Gene
SIO_000068: ncbigene

position:22320:1
position: 22320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23753:1
position: 23753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22320-23753:1:exon

FOB47_RS10190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10190
old locus tag: FOB47_10190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011615094.1
GO function: GO:0004180 - carboxypeptidase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amidohydrolase
translation: MAARRSPAFAPSQRFLTLPAALSALAAAAGLLCGSALLSPALAQTATPAAAQSLASSGDPALHAQIETRAKAAEARLIAWRRDIHQHPELGNYETRTAKLVADHLRKLGMDVKTGVAKTGVVGLLKGGKPGPVVALRADMDALPVKERVDVPFASKAKGKYLGKEVDVMHACGHDTHVAILMATAEVLAGMKDQLPGTVKFIFQPAEESPADIEPDGTNIWGAKQMVAEGVLENPKVDAIFGLHVSSGIESGKLAWRSGPAMAAADQFWIDVKGRQTHGARPWGGIDPIVVSSQIVLGLQTIQSRQVNAMLEPSVITVGTIHGGNRMNIVPEKVEMMGTIRTYDEGMKKDIHARMKRTTESIAASSGAEATFRVVELYNATVNQPALTEKMAPTLKRVAGDGNWMLAPKATASEDFSFYQEKVPGLFFNLGVTPKGTDVTKAPSNHSPEFYVDEPALIHGVRALSNLTVDYMTMAQR
SIO_010081: FOB47_RS10190
subclass of: SO_0000673
so part of: FOB47_RS10190
location: 22320..23753
location: region:22320-23753:1
so has part: feature:22320-23753:1:exon

WP_174780989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22320-23753:1:exon

FOB47_RS10195
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
gene: serB
locus tag: FOB47_RS10195
old locus tag: FOB47_10195
so part of: sequence
location: 23860..24714
location: region:23860-24714:1
so has part: feature:23860-24714:1:exon
subclass of: SO_0000010

70688707
type: Gene
SIO_000068: ncbigene

position:23860:1
position: 23860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24714:1
position: 24714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23860-24714:1:exon

FOB47_RS10195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
gene: serB
locus tag: FOB47_RS10195
old locus tag: FOB47_10195
EC number: 3.1.3.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018311411.1
GO function: GO:0036424 - L-phosphoserine phosphatase activity [Evidence IEA]
GO process: GO:0006564 - L-serine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphoserine phosphatase SerB
translation: MPLIVQSLQPIASQDIDTLRALADAPGLSLRADTVATAEACAPLDDRLRDALETFCEPRRLDWAVLPTHRTLSDFRLVAMDMDSTLITIECIDEIADFCGLKAEVSAITEAAMRGEITDFNESLRRRVALLKGLDASVLDRVYEERLRLSPGAERMLEAARAAGLRTLLVSGGFVHFTEKLKARLGLDYARANTLEIVDGKLTGRVEGEIVNAEVKARTVRETCEAIGADPRQAIVMGDGSNDLKMMAIAGLSVAFRAKPVVRAQASVAFNHVGLDGLLNLFAA
SIO_010081: FOB47_RS10195
subclass of: SO_0000673
so part of: FOB47_RS10195
location: 23860..24714
location: region:23860-24714:1
so has part: feature:23860-24714:1:exon

WP_174780990.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23860-24714:1:exon

FOB47_RS10200
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10200
old locus tag: FOB47_10200
so part of: sequence
location: 25076..25351
location: region:25076-25351:1
so has part: feature:25076-25351:1:exon
subclass of: SO_0000010

70688708
type: Gene
SIO_000068: ncbigene

position:25076:1
position: 25076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25351:1
position: 25351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25076-25351:1:exon

FOB47_RS10200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10200
old locus tag: FOB47_10200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012352646.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQLFAALLGLAGAACLYLAGPNQVLLRRPPQRRMMVWLGIVLTSAGAVGWSVEHSWPSSIAATLATLGTGLSLWPFLGCYLHKRRGGEEAA
SIO_010081: FOB47_RS10200
subclass of: SO_0000673
so part of: FOB47_RS10200
location: 25076..25351
location: region:25076-25351:1
so has part: feature:25076-25351:1:exon

WP_053821960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25076-25351:1:exon

FOB47_RS10205
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10205
old locus tag: FOB47_10205
so part of: sequence
location: 25348..25632
location: region:25348-25632:1
so has part: feature:25348-25632:1:exon
subclass of: SO_0000010

70688709
type: Gene
SIO_000068: ncbigene

position:25348:1
position: 25348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25632:1
position: 25632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25348-25632:1:exon

FOB47_RS10205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10205
old locus tag: FOB47_10205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020201237.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNGGIGTKWLAGTLLGFPLSLAVCTLAILWLPGGWQSGIIGAVTASLPLWVAIISTSLLFSSSRAAWLWLGAANLICFGALWGWRLMAVPGAAA
SIO_010081: FOB47_RS10205
subclass of: SO_0000673
so part of: FOB47_RS10205
location: 25348..25632
location: region:25348-25632:1
so has part: feature:25348-25632:1:exon

WP_006576342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25348-25632:1:exon

FOB47_RS10210
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10210
old locus tag: FOB47_10210
so part of: sequence
location: 25643..27274
location: region:25643-27274:1
so has part: feature:25643-27274:1:exon
subclass of: SO_0000010

70688710
type: Gene
SIO_000068: ncbigene

position:25643:1
position: 25643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27274:1
position: 27274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25643-27274:1:exon

FOB47_RS10210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10210
old locus tag: FOB47_10210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020201236.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PepSY-associated TM helix domain-containing protein
translation: MKAATLRVYQTLHTWVGLMAGWALFIAFFAGAITVFHHELHEWQSPARIRGETHTAAKPSPEDLDRFVATLVKAHPEAAASVYIGLPTEGEPHTTAYWMDAKGEWQTTNEEKLGAGRTSPQDTSLDGVRGELSNFLNALHYTLGLPMQAGMHFMGVVSVLYGLALVSGVLLHLPRLKKDLFAVRPGRNLKRFWMDAHNVIGLFSLPFHLVIAITGALFCVSMTLTMAFNVLTFDGKLMSALPTAMSSVPEVQAAGKPAPLMPARELIEIAQRTAGDGFKPNSVRYQRVGDANALIEVRGDSERALGNFGSVGIHAAAGQPDSGRVIANQTASGRDANHGLYSALFALHFGTYGDLALRLVYLIAGLAGAFLFYSGNLLWIESRRKARQAEQPRVHRLLAQATVGVCIGCCVGVAVAFTGALLWPERPSSFVYFPVFFAALAWALLRPPVRAAIELLYAAALAYLAVPVANAILTGDHLLRSVRQGEWAVAGFDIGALVFAVGFVALARATQRRARTGPADSVWAPRPSRGDPGPSAPPVVDTP
SIO_010081: FOB47_RS10210
subclass of: SO_0000673
so part of: FOB47_RS10210
location: 25643..27274
location: region:25643-27274:1
so has part: feature:25643-27274:1:exon

WP_174780991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25643-27274:1:exon

FOB47_RS10215
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10215
old locus tag: FOB47_10215
so part of: sequence
location: 27485..29698
location: region:27485-29698:1
so has part: feature:27485-29698:1:exon
subclass of: SO_0000010

70688711
type: Gene
SIO_000068: ncbigene

position:27485:1
position: 27485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29698:1
position: 29698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27485-29698:1:exon

FOB47_RS10215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10215
old locus tag: FOB47_10215
inference: COORDINATES: protein motif:HMM:TIGR01783.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent receptor
translation: MSNPRRGRPALTPLARQLALIVAVGGAATPALAQNATGTAAVPPTPAATPTATAQAELPTVHVTAGSEPAYRARDASTGALGDKPLQDTPFSVSVVPQELIENRQAITLGDVFRGDPSVAPIGDGYIGESAGLTIRGLHLDLLEGYKIDGLAIPNWGSDVPLEHFERVELLKGLGGFMYGFGAPGGIANFVTKRPTSKFAGSATLGYVSDGVLRESIDVGGRFGANDMFGARAGFVHEEGDTFVDGGHIKRDSASVALDARLSPNLRWSLDGLYQQRNVKGAYYGIIPGQDFGAPVTEFVHTPRTLDGSQRVASKGTYYETEIKSIGTELNWGFADDWNLRTSYRFTQQNRGNADSAILLLDNAGNYAENQYSSYSRYHYQHAQTMATGKVRTGSIEHDIAAGLSWQSLVQNWGSFAGGGIIGYGNLYDPGQFVPTGLPLSRVPSSDVLYRASKIEQKSVFFSDTIKFNEQWSVLAGLRYTRYDQTGYTPEGAISSTYRKSPLTPTVALMYKPVQPLTLYGSYVESLEAGGSAPLTARNAGEVFGPLKSRQYEIGAKAELEDWTINAALFQIQRGLNYLRNDNVYTQDGETRYRGIELSARGKLARDWTLMGGVTLLDSENVEASPDVLGKRAYSAPTFKATAYIEYAVPPVPGLVLTAGGQYVSKMALEANNSNWVPAYHTFDAGIRYSTKLGKTPAVFRLVVDNLTNEKYWLPSYGFILTQGAPRTVRASATFSF
SIO_010081: FOB47_RS10215
subclass of: SO_0000673
so part of: FOB47_RS10215
location: 27485..29698
location: region:27485-29698:1
so has part: feature:27485-29698:1:exon

WP_174780992.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27485-29698:1:exon

FOB47_RS10220
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10220
old locus tag: FOB47_10220
so part of: sequence
location: complement(29795..30730)
location: region:29795-30730:-1
so has part: feature:29795-30730:-1:exon
subclass of: SO_0000010

70688712
type: Gene
SIO_000068: ncbigene

position:29795:-1
position: 29795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30730:-1
position: 30730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29795-30730:-1:exon

FOB47_RS10220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10220
old locus tag: FOB47_10220
inference: COORDINATES: protein motif:HMM:NF016629.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rpn family recombination-promoting nuclease/putative transposase
translation: MARDYDAGYKLLFAMPEMMRDLLREFIRSDWLRALDYSTLERVSGNYVADNMRQRASDMVWRVDAGDPWGHLYVLLEFQSTIDRYMAPRMAAYTALLHQELVRAGQVLPDRRVPAALSIVLYNGDTPWSACTNIRDVVVSLPNGLAACQLHQQHTLLDINRLSEAQLPDDNLAALLFRIERAADYDTVVSLMIECRTRLRHEPKLKLAFAKTFAALLCGQRGSVLTPDQVFQLMEVDMQVVGANLQRFTHKLREEARQEGEARMLQKQLAERFGPLQTSVVQRIEIATSEELERWGIQLLRAEVIEDVFRA
SIO_010081: FOB47_RS10220
subclass of: SO_0000673
so part of: FOB47_RS10220
location: complement(29795..30730)
location: region:29795-30730:-1
so has part: feature:29795-30730:-1:exon

WP_174780993.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29795-30730:-1:exon

FOB47_RS10225
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
locus tag: FOB47_RS10225
old locus tag: FOB47_10225
so part of: sequence
location: complement(30893..32155)
location: region:30893-32155:-1
so has part: feature:30893-32155:-1:exon
subclass of: SO_0000010

70688713
type: Gene
SIO_000068: ncbigene

position:30893:-1
position: 30893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32155:-1
position: 32155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30893-32155:-1:exon

FOB47_RS10225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
locus tag: FOB47_RS10225
old locus tag: FOB47_10225
EC number: 4.4.1.13
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015875628.1
GO function: GO:0004121 - cystathionine beta-lyase activity [Evidence IEA]
GO process: GO:0019346 - transsulfuration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cystathionine beta-lyase
translation: MPRALDPAEPILSDQGTPYSPRYDDVYHSVEGGLAQARHVFLGGNGLPQAWQGREQFVIVETGFGQGLNFLATWQAWRDDPRRCARLHFVSIEKHPFTREGLAELHAGLGAISLVYFALLKAGDDVLVPYNVYGPNREHGEWLARDFGITVRPYDPMIGAGIAELIRPNTRLIWMEAPGSVTMEVPDSEAIVAAAKARGVLTAIDNTWSAGIYFRPFDKGIDLSVQALTKYQSGGSDVLMGAVLCRDDKLYQRIKRVRMLMGWGVSADDCYLVLRSLPSMPVRLAAHDRAAREVAEWLAQRPEVARVLHPALPDCPGHAFWRRDFSGASGLFAVVLRARYPRAQVDAFVEALRLFSIGWSWGGAHSLAVPYHVPTMRPAGSWPPAGWQDAGELVRLYIGLEDTRDLIADLKAAMEANLVG
SIO_010081: FOB47_RS10225
subclass of: SO_0000673
so part of: FOB47_RS10225
location: complement(30893..32155)
location: region:30893-32155:-1
so has part: feature:30893-32155:-1:exon

WP_244959324.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30893-32155:-1:exon

FOB47_RS10235
type: Gene
subclass of: SO_0000704
RO_0002162: 82541
gene: rlmJ
locus tag: FOB47_RS10235
old locus tag: FOB47_10235
so part of: sequence
location: 32302..33159
location: region:32302-33159:1
so has part: feature:32302-33159:1:exon
subclass of: SO_0000010

70688714
type: Gene
SIO_000068: ncbigene

position:32302:1
position: 32302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33159:1
position: 33159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32302-33159:1:exon

FOB47_RS10235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 82541
gene: rlmJ
locus tag: FOB47_RS10235
old locus tag: FOB47_10235
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006578564.1
GO function: GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
GO process: GO:0070475 - rRNA base methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ
translation: MLSYRHAFHAGNHADVLKHAIVAHLLDYLTQKDKPFWYIDTHAGAGLYALDEGYATRKSEFETGIAPLWRAAADGRALPPLLQQYLDQVRTLNPDGRLRHYPGSPWLAWQTLREADRLRLFELHSTEIQVLRENFRGAGRRVMLYDGDGFGGIKAILPPPPRRALVLIDPSYEDKQDYARTLQCLRDGLQRFATGTYAVWYPQVQRRESVQLPVQMKALPFKSWLHATLTVKHPVPGGLGLHGSGMFVANPPWTLRAALEAALPALVELLGQDAGAAFTLEGEQP
SIO_010081: FOB47_RS10235
subclass of: SO_0000673
so part of: FOB47_RS10235
location: 32302..33159
location: region:32302-33159:1
so has part: feature:32302-33159:1:exon

WP_174780994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32302-33159:1:exon