Xiphias gladius mitochondrion, complete genome.
type: Entry
definition: Xiphias gladius mitochondrion, complete genome.
sequence version: NC_012677.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_012677.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Xiphias gladius (swordfish)
organism: Xiphias gladius
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AB470301.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16520
topology: linear
so has quality: SO_0000987
location: 1..16520
location: region:1-16520:1
RO_0002162: 8245

NC_012677
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Complete mitochondrial DNA sequence of Xiphiidae and Istiophoridae species
author: Kadoyama, K.
author: Ishizaki, S.
author: Usui, K.
author: Nagashima, Y.
author: Shiomi, K.
author: Watabe, S.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (11-MAY-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Kadoyama, K.
author: Ishizaki, S.
author: Usui, K.
author: Nagashima, Y.
author: Shiomi, K.
author: Watabe, S.
journal: Submitted (15-NOV-2008) Tokyo University of Marine Science and Technology, Department of Food Science and Technology; 5-7 Konan, Minato 4, Tokyo 108-8477, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16520:1
position: 16520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16520:1:source
so part of: sequence
organism: Xiphias gladius
organelle: mitochondrion
mol type: genomic DNA
tissue type: muscle

8245
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Phe
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:region

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8245
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 69..1015
location: region:69-1015:1
so has part: feature:69-1015:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1015:1
position: 1015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1015:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Val
so part of: sequence
location: 1016..1087
location: region:1016-1087:1
so has part: feature:1016-1087:1:region

position:1016:1
position: 1016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1087:1
position: 1087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1016-1087:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8245
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1088..2805
location: region:1088-2805:1
so has part: feature:1088-2805:1:region

position:1088:1
position: 1088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2805:1
position: 2805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1088-2805:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2806..2879
location: region:2806-2879:1
so has part: feature:2806-2879:1:region

position:2806:1
position: 2806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2879:1
position: 2879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2806-2879:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: ND1
so part of: sequence
location: 2880..3854
location: region:2880-3854:1
so has part: feature:2880-3854:1:exon
subclass of: SO_0000010

7871594
type: Gene
SIO_000068: ncbigene

position:2880:1
position: 2880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3854:1
position: 3854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2880-3854:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MMSALITHIINPLAFIVPVLLAVAFLTLIERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTASPVLFLLTPMLALTLALTLWAPMPLPYPVADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNIIIFTGGFTLQTFNTAQESVWLVLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLGASHIPTIPELTAANLMTKAALLSMVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPIAFAGLPPQL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2880..3854
location: region:2880-3854:1
so has part: feature:2880-3854:1:exon

YP_002887520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2880-3854:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Ile
so part of: sequence
location: 3859..3928
location: region:3859-3928:1
so has part: feature:3859-3928:1:region

position:3859:1
position: 3859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3928:1
position: 3928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3859-3928:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Gln
so part of: sequence
location: complement(3928..3998)
location: region:3928-3998:-1
so has part: feature:3928-3998:-1:region

position:3928:-1
position: 3928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3998:-1
position: 3998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3928-3998:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Met
so part of: sequence
location: 3998..4066
location: region:3998-4066:1
so has part: feature:3998-4066:1:region

position:3998:1
position: 3998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4066:1
position: 4066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3998-4066:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: ND2
so part of: sequence
location: 4067..5113
location: region:4067-5113:1
so has part: feature:4067-5113:1:exon
subclass of: SO_0000010

7871600
type: Gene
SIO_000068: ncbigene

position:4067:1
position: 4067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5113:1
position: 5113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4067-5113:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: ND2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYILATLLFGLGLGTTITFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMLLFASTTNAWLTGQWDIQQMSHPFPLTLITLALALKIGLAPMHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLLQIQNVNPTILVTLGLASTLVGGWGGLNQTQLRKVLAYSSIAHLGWMILILQYSPSLTLLALLTYFVMTFSTFLVFKLNKSTSINALAISWTKAPILTSLTPLVLLSLGGLPPLTGFMPKWLILQELAKQDLAPLATLAALSALLSLYFYLRISYAMTLTMSPNNLTGVTPWRFSSPQLTLPLAIATTATISLLPLAPAAIALLTP
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4067..5113
location: region:4067-5113:1
so has part: feature:4067-5113:1:exon

YP_002887521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4067-5113:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Trp
so part of: sequence
location: 5113..5183
location: region:5113-5183:1
so has part: feature:5113-5183:1:region

position:5183:1
position: 5183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5113-5183:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Ala
so part of: sequence
location: complement(5185..5253)
location: region:5185-5253:-1
so has part: feature:5185-5253:-1:region

position:5185:-1
position: 5185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5253:-1
position: 5253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5185-5253:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Asn
so part of: sequence
location: complement(5255..5327)
location: region:5255-5327:-1
so has part: feature:5255-5327:-1:region

position:5255:-1
position: 5255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5327:-1
position: 5327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5255-5327:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Cys
so part of: sequence
location: complement(5367..5433)
location: region:5367-5433:-1
so has part: feature:5367-5433:-1:region

position:5367:-1
position: 5367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5433:-1
position: 5433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5367-5433:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Tyr
so part of: sequence
location: complement(5434..5504)
location: region:5434-5504:-1
so has part: feature:5434-5504:-1:region

position:5434:-1
position: 5434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5504:-1
position: 5504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5434-5504:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: COX1
so part of: sequence
location: 5506..7056
location: region:5506-7056:1
so has part: feature:5506-7056:1:exon
subclass of: SO_0000010

7871601
type: Gene
SIO_000068: ncbigene

position:5506:1
position: 5506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7056:1
position: 7056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5506-7056:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPAAVSMYQIPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTAFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGAIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIVAAFVHWFPLFTGYTLHSTWTKIHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYALWNTVSSIGSLVSLVAVIMFLFIIWEAFTAKREVLSVELTATNVEWLHGCPPPYHTFEQPAFVQVRSH
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5506..7056
location: region:5506-7056:1
so has part: feature:5506-7056:1:exon

YP_002887522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5506-7056:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7057..7124)
location: region:7057-7124:-1
so has part: feature:7057-7124:-1:region

position:7057:-1
position: 7057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7124:-1
position: 7124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7057-7124:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Asp
so part of: sequence
location: 7131..7201
location: region:7131-7201:1
so has part: feature:7131-7201:1:region

position:7131:1
position: 7131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7201:1
position: 7201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7131-7201:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: COX2
so part of: sequence
location: 7210..7900
location: region:7210-7900:1
so has part: feature:7210-7900:1:exon
subclass of: SO_0000010

7871597
type: Gene
SIO_000068: ncbigene

position:7210:1
position: 7210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7900:1
position: 7900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7210-7900:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7900,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPLMEELLHFHDHALMIVFLISTMVLYIIVAMVTAKFTDKLVLDSQEIEIIWTLLPAIILILIALPSLRILYLMDEINDPHLTIKALGHQWYWSYEYTDYEDLGFDSYMIPTQDLTPGQFRLLEADHRMVIPVESPIRVLISAEDVLHSWAIPALGVKVDAVPGRLNQTTFIVNRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWTSLMIEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7210..7900
location: region:7210-7900:1
so has part: feature:7210-7900:1:exon

YP_002887523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7210-7900:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Lys
so part of: sequence
location: 7901..7975
location: region:7901-7975:1
so has part: feature:7901-7975:1:region

position:7901:1
position: 7901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7975:1
position: 7975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7901-7975:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: ATP8
so part of: sequence
location: 7977..8144
location: region:7977-8144:1
so has part: feature:7977-8144:1:exon
subclass of: SO_0000010

7871598
type: Gene
SIO_000068: ncbigene

position:7977:1
position: 7977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8144:1
position: 8144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7977-8144:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFAILAFSWLVFLTVIPPKVLAHSFPNEPSSHSAEQPKTESWNWPWH
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7977..8144
location: region:7977-8144:1
so has part: feature:7977-8144:1:exon

YP_002887524.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7977-8144:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: ATP6
so part of: sequence
location: 8135..8818
location: region:8135-8818:1
so has part: feature:8135-8818:1:exon
subclass of: SO_0000010

7871596
type: Gene
SIO_000068: ncbigene

position:8135:1
position: 8135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8818:1
position: 8818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8135-8818:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLSFFDQFMSPTYLGIPLIALAIALPWILYPTPSSRWLNNRLLTLQGWFINRFTQQLLLPLNPGGHKWALLFTSLMIFLISLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTLLIPILIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8135..8818
location: region:8135-8818:1
so has part: feature:8135-8818:1:exon

YP_002887525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8135-8818:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: COX3
so part of: sequence
location: 8818..9603
location: region:8818-9603:1
so has part: feature:8818-9603:1:exon
subclass of: SO_0000010

7871595
type: Gene
SIO_000068: ncbigene

position:9603:1
position: 9603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8818-9603:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: COX3
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQSHPYHMVDPSPWPLTGAVAALLMTSGLAIWFHFHSVPLMALGTALLVLTVCQWWRDVVREGTFQGHHTPPVQKGLRYGMILFITSEVLFFLGFFWAFYHSSLAPTPELGGHWPPTGITALDPFEVPLLNTAVLLASGVTVTWAHHSIMEAKRKQAIQSLALTILLGAYFTFLQAMEYNEAPFTIADGVYGATFFVATGFHGLHVLIGSTFLAVCLLRQVRHHFTSNHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8818..9603
location: region:8818-9603:1
so has part: feature:8818-9603:1:exon

YP_002887526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8818-9603:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Gly
so part of: sequence
location: 9603..9674
location: region:9603-9674:1
so has part: feature:9603-9674:1:region

position:9674:1
position: 9674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9603-9674:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: ND3
so part of: sequence
location: 9675..10023
location: region:9675-10023:1
so has part: feature:9675-10023:1:exon
subclass of: SO_0000010

7871599
type: Gene
SIO_000068: ncbigene

position:9675:1
position: 9675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10023:1
position: 10023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9675-10023:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:10023,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLVTTVITIAVALSTVLAIVSFWLPQMTPDHEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLASPLLTFFWASAVLILLTLGLIYEWMQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9675..10023
location: region:9675-10023:1
so has part: feature:9675-10023:1:exon

YP_002887527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9675-10023:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Arg
so part of: sequence
location: 10024..10092
location: region:10024-10092:1
so has part: feature:10024-10092:1:region

position:10024:1
position: 10024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10092:1
position: 10092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10024-10092:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: ND4L
so part of: sequence
location: 10093..10389
location: region:10093-10389:1
so has part: feature:10093-10389:1:exon
subclass of: SO_0000010

7871602
type: Gene
SIO_000068: ncbigene

position:10093:1
position: 10093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10389:1
position: 10389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10093-10389:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFAFSSTFMLGLTGLAFHRYHLLSALLCLEGMMLSLFIALSLWTLQLDSTNFSASPMLLLAFSACEASAGLALLVATARTHGTDRLQSLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10093..10389
location: region:10093-10389:1
so has part: feature:10093-10389:1:exon

YP_002887528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10093-10389:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: ND4
so part of: sequence
location: 10383..11763
location: region:10383-11763:1
so has part: feature:10383-11763:1:exon
subclass of: SO_0000010

7871604
type: Gene
SIO_000068: ncbigene

position:10383:1
position: 10383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11763:1
position: 11763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10383-11763:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11763,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLMLAPTTWLSSPKWLWPSTLAHSFMIALFSLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMTLASQNHMSSEPINRQRMYITLLTSLQFFLILAFSATEVIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSLLTLQYSDPLYLNSYADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLEPLTKDLSYPFIVFALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMVLPLMATWWFFASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMFLMTQRGPLPAHIIALDPSHSREHLLILLHLLPLLLLILKPELIWGWTA
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10383..11763
location: region:10383-11763:1
so has part: feature:10383-11763:1:exon

YP_002887529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10383-11763:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-His
so part of: sequence
location: 11764..11832
location: region:11764-11832:1
so has part: feature:11764-11832:1:region

position:11764:1
position: 11764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11832:1
position: 11832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11764-11832:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11833..11901
location: region:11833-11901:1
so has part: feature:11833-11901:1:region

position:11833:1
position: 11833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11901:1
position: 11901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11833-11901:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11905..11977
location: region:11905-11977:1
so has part: feature:11905-11977:1:region

position:11905:1
position: 11905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11977:1
position: 11977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11905-11977:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: ND5
so part of: sequence
location: 11978..13816
location: region:11978-13816:1
so has part: feature:11978-13816:1:exon
subclass of: SO_0000010

7871603
type: Gene
SIO_000068: ncbigene

position:11978:1
position: 11978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13816:1
position: 13816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11978-13816:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHPTSLMMTSSLIIIFALLAYPLLTTLSPQPREPHWALSHIKTAVKLAFFVSLLPLFLFLNEGLETIVTNWNWMNTLTFDINISLKFDHYSIIFTPIALYVTWSILEFASWYMHSDPYMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRSDANTAALQAVLYNRVGDIGLIFAMAWMATNLNSWEMQQMFATAKDFDLTLPLLGLIIAATGKSAQLGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRMSPLMENNQTALTICLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLLATSFTAIYSLRVVFFVSMGHPRFNPLSPINENNPTVINPIKRLAWGSIIAGLLITSNMLPLKTPVMSMPLLLKLAALAVTITGLLIALELASLTNKQFKPTPTLTTHHFSNMLGFFPAIVHRLTPKLNLTLGQTVASQMVDQTWLEKTGPKAITSYNLPLVTTTSNIQQGMIKTYLSLFLLTLTLMTLLLAY
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11978..13816
location: region:11978-13816:1
so has part: feature:11978-13816:1:exon

YP_002887530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11978-13816:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: ND6
so part of: sequence
location: complement(13813..14334)
location: region:13813-14334:-1
so has part: feature:13813-14334:-1:exon
subclass of: SO_0000010

7871605
type: Gene
SIO_000068: ncbigene

position:13813:-1
position: 13813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14334:-1
position: 14334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13813-14334:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTFIMYLLLFSFVMGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGPFLSLVLFLIYLGGMLVVFAYSAALAAEPYPESWGSRPVVMYMGAYLVGVVVVSGLFWGGWYESSWVSVDELGEFSVFRGDVGGVALMYSLGGWMLIISAWVLLLTLFVVLELTRGLSRGALRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13813..14334)
location: region:13813-14334:-1
so has part: feature:13813-14334:-1:exon

YP_002887531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13813-14334:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Glu
so part of: sequence
location: complement(14335..14403)
location: region:14335-14403:-1
so has part: feature:14335-14403:-1:region

position:14335:-1
position: 14335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14403:-1
position: 14403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14335-14403:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 8245
gene: CYTB
so part of: sequence
location: 14407..15547
location: region:14407-15547:1
so has part: feature:14407-15547:1:exon
subclass of: SO_0000010

7871606
type: Gene
SIO_000068: ncbigene

position:14407:1
position: 14407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15547:1
position: 15547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14407-15547:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8245
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15547,aa:TERM)
transl table: 2
product: cytochrome b
translation: MANLRKTHPLLKIANDALVDLPTPSNISVWWNFGSLLGLCLAAQVLTGLFLAMHYTSDIATAFTSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNALVQWIWGGFSVDNATLTRFFAFHFLLPFVIMAATIIHLLFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLVALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVAILTWIGGMPVEHPFIIIGQIASFLYFFLFLVLAPLAGWLENKALGWS
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14407..15547
location: region:14407-15547:1
so has part: feature:14407-15547:1:exon

YP_002887532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14407-15547:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Thr
so part of: sequence
location: 15548..15614
location: region:15548-15614:1
so has part: feature:15548-15614:1:region

position:15548:1
position: 15548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15614:1
position: 15614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15548-15614:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8245
product: tRNA-Pro
so part of: sequence
location: complement(15620..15690)
location: region:15620-15690:-1
so has part: feature:15620-15690:-1:region

position:15620:-1
position: 15620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15690:-1
position: 15690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15620-15690:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 8245
so part of: sequence
location: 15691..16520
location: region:15691-16520:1
so has part: feature:15691-16520:1:region

position:15691:1
position: 15691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15691-16520:1:region