Thunnus maccoyii mitochondrion, complete genome.
type: Entry
definition: Thunnus maccoyii mitochondrion, complete genome.
sequence version: NC_014101.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_014101.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Thunnus maccoyii (southern bluefin tuna)
organism: Thunnus maccoyii
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus.
reference: 1
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to GU256523.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16527
topology: circular
so has quality: SO_0000988
location: 1..16527
location: region:1-16527:1
RO_0002162: 8240

NC_014101
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Development of a PCR-based method for differentiation of tuna and related species in canned products
author: Martinez Ibarra, C.
author: Ishizaki, S.
author: Nagashima, Y.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (30-APR-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Martinez Ibarra, C.
author: Ishizaki, S.
author: Nagashima, Y.
journal: Submitted (02-DEC-2009) Food Science and Technology, Tokyo University of Marine Science and Technology, 5-7 Konan, Minato 4, Tokyo 108-8477, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16527:1
position: 16527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16527:1:source
so part of: sequence
organism: Thunnus maccoyii
organelle: mitochondrion
mol type: genomic DNA

8240
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Phe
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:region

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8240
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 69..1015
location: region:69-1015:1
so has part: feature:69-1015:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1015:1
position: 1015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1015:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Val
so part of: sequence
location: 1016..1088
location: region:1016-1088:1
so has part: feature:1016-1088:1:region

position:1016:1
position: 1016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1088:1
position: 1088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1016-1088:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8240
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1089..3780
location: region:1089-3780:1
so has part: feature:1089-3780:1:region

position:1089:1
position: 1089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3780:1
position: 3780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1089-3780:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2781..2854
location: region:2781-2854:1
so has part: feature:2781-2854:1:region

position:2781:1
position: 2781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2854:1
position: 2854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2781-2854:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: ND1
so part of: sequence
location: 2855..3829
location: region:2855-3829:1
so has part: feature:2855-3829:1:exon
subclass of: SO_0000010

9086878
type: Gene
SIO_000068: ncbigene

position:2855:1
position: 2855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3829:1
position: 3829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2855-3829:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MITALMTHILNPLAFIVPVLLAVAFLTLIERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLXIKEPVRPSTSSPVLFLLAPMLALTLALTLWAPMPLPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGGFTLQTFNIAQEAIWLIIPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFAXFFLAEYANILLMNTLSATLFLGASHIPTIPELTATNLMIKAALLSMVFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPIAFAGLPPQL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2855..3829
location: region:2855-3829:1
so has part: feature:2855-3829:1:exon

YP_003595292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2855-3829:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Ile
so part of: sequence
location: 3834..3904
location: region:3834-3904:1
so has part: feature:3834-3904:1:region

position:3834:1
position: 3834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3904:1
position: 3904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3834-3904:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Glu
so part of: sequence
location: complement(3904..3974)
location: region:3904-3974:-1
so has part: feature:3904-3974:-1:region

position:3904:-1
position: 3904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3974:-1
position: 3974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3904-3974:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Met
so part of: sequence
location: 3974..4042
location: region:3974-4042:1
so has part: feature:3974-4042:1:region

position:3974:1
position: 3974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4042:1
position: 4042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3974-4042:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: ND2
so part of: sequence
location: 4043..5088
location: region:4043-5088:1
so has part: feature:4043-5088:1:exon
subclass of: SO_0000010

9086889
type: Gene
SIO_000068: ncbigene

position:4043:1
position: 4043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5088:1
position: 5088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4043-5088:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5087..5088,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYILATLLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQNHHPRAVEATTKYFLTQATAAAMLLFASTTNAWLTGQWNIEQMTHPIPTTMIMLALALKIGLAPVHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQIHPTNPTLLIVLGVASTLVGGWGGLNQTQLRKILAYSSIAHLGWMILILQFSPSLTLLTLLTYFIMTFSAFLVFKLNKATNINTLATSWAKAPALTSLTPLVLLSLGGLPPLTGFMPKWLILQELSKQDLAPVATLAALSALLSLYFYLRLSYAMTLTMSPNNLSGTASWRLPSLQSTLPVATSLVATLALLPLTPAITAILTL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4043..5088
location: region:4043-5088:1
so has part: feature:4043-5088:1:exon

YP_003595293.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4043-5088:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Trp
so part of: sequence
location: 5089..5158
location: region:5089-5158:1
so has part: feature:5089-5158:1:region

position:5089:1
position: 5089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5158:1
position: 5158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5089-5158:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Ala
so part of: sequence
location: complement(5160..5228)
location: region:5160-5228:-1
so has part: feature:5160-5228:-1:region

position:5160:-1
position: 5160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5228:-1
position: 5228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5160-5228:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Asn
so part of: sequence
location: complement(5231..5303)
location: region:5231-5303:-1
so has part: feature:5231-5303:-1:region

position:5231:-1
position: 5231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5303:-1
position: 5303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5231-5303:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 8240
note: replication origin of L strand
so part of: sequence
location: 5305..5338
location: region:5305-5338:1
so has part: feature:5305-5338:1:region

position:5305:1
position: 5305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5338:1
position: 5338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5305-5338:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Cys
so part of: sequence
location: complement(5339..5406)
location: region:5339-5406:-1
so has part: feature:5339-5406:-1:region

position:5339:-1
position: 5339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5406:-1
position: 5406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5339-5406:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Tyr
so part of: sequence
location: complement(5407..5474)
location: region:5407-5474:-1
so has part: feature:5407-5474:-1:region

position:5407:-1
position: 5407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5474:-1
position: 5474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5407-5474:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: COX1
so part of: sequence
location: 5476..7026
location: region:5476-7026:1
so has part: feature:5476-7026:1:exon
subclass of: SO_0000010

9086890
type: Gene
SIO_000068: ncbigene

position:5476:1
position: 5476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7026:1
position: 7026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5476-7026:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVXPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPAAISQYQTPLFVXAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAXHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGAVKWETPLLWAIGFIFLFTVGGLTGXVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIVAAFVHWFPLXTGYTLHSTWTKIHFGVMXVGVXLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTISSIGSLISLVAVIMFLFIIWEAFAAKREVMSVELTSTNVEWLHGCPPPYHTFEEPAFVLVQSD
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5476..7026
location: region:5476-7026:1
so has part: feature:5476-7026:1:exon

YP_003595294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5476-7026:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7027..7097)
location: region:7027-7097:-1
so has part: feature:7027-7097:-1:region

position:7027:-1
position: 7027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7097:-1
position: 7097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7027-7097:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Asp
so part of: sequence
location: 7101..7173
location: region:7101-7173:1
so has part: feature:7101-7173:1:region

position:7101:1
position: 7101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7173:1
position: 7173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7101-7173:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: COX2
so part of: sequence
location: 7182..7872
location: region:7182-7872:1
so has part: feature:7182-7872:1:exon
subclass of: SO_0000010

9086887
type: Gene
SIO_000068: ncbigene

position:7182:1
position: 7182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7872:1
position: 7872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7182-7872:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7872,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVAMVSTKLTNKYILDSQEIEIIWTILPAIILILIALPSLRILYLMDEXNDPHLTIKAVGHQWYWSYEYTDYEDLGFDSYMIPTQDLAPGQFRLLEADHRMVIPVESPIRILISADDVLHSWAVPSLGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWSSLMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7182..7872
location: region:7182-7872:1
so has part: feature:7182-7872:1:exon

YP_003595295.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7182-7872:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Lys
so part of: sequence
location: 7873..7946
location: region:7873-7946:1
so has part: feature:7873-7946:1:region

position:7873:1
position: 7873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7946:1
position: 7946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7873-7946:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: ATP8
so part of: sequence
location: 7948..8115
location: region:7948-8115:1
so has part: feature:7948-8115:1:exon
subclass of: SO_0000010

9086888
type: Gene
SIO_000068: ncbigene

position:7948:1
position: 7948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8115:1
position: 8115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7948-8115:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWLAILVFSWLVFLIIIPPKVMAHSFPNEPTPQSTEKPKGEPWNWPWH
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7948..8115
location: region:7948-8115:1
so has part: feature:7948-8115:1:exon

YP_003595296.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7948-8115:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: ATP6
so part of: sequence
location: 8106..8789
location: region:8106-8789:1
so has part: feature:8106-8789:1:exon
subclass of: SO_0000010

9086886
type: Gene
SIO_000068: ncbigene

position:8106:1
position: 8106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8789:1
position: 8789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8106-8789:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLSFFXQFMSPVFLGIPLMALAXTLPWVLFPTPTSRWLNNRLLTLQNWFIGRFAHELFMPVNLPGHKWAVLLTSLMLFLISLNMLGLLPYTFTPTTQLSLNMGLAFPLWLATVXIGMRNQPTEALGXLLPEGTPTLLIPVLIVIETISLFIRPLALGVRLTANLTAGHLLIQLIATAATVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8106..8789
location: region:8106-8789:1
so has part: feature:8106-8789:1:exon

YP_003595297.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8106-8789:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: COX3
so part of: sequence
location: 8789..9573
location: region:8789-9573:1
so has part: feature:8789-9573:1:exon
subclass of: SO_0000010

9086885
type: Gene
SIO_000068: ncbigene

position:9573:1
position: 9573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8789-9573:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9572..9573,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAVAALLMTSGLAIWFHFHSTTLMTVGTALLLLTMYQWWRDIIREGTYQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGLTTLXPFEVPLLNTAVLLASGVTVTWAHHSIMEGNRKEAIQSLALTILLGFYFTFLQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIRYHFTSDHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8789..9573
location: region:8789-9573:1
so has part: feature:8789-9573:1:exon

YP_003595298.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8789-9573:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Gly
so part of: sequence
location: 9574..9644
location: region:9574-9644:1
so has part: feature:9574-9644:1:region

position:9574:1
position: 9574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9644:1
position: 9644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9574-9644:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: ND3
so part of: sequence
location: 9645..9993
location: region:9645-9993:1
so has part: feature:9645-9993:1:exon
subclass of: SO_0000010

9086884
type: Gene
SIO_000068: ncbigene

position:9645:1
position: 9645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9993:1
position: 9993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9645-9993:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9993,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MSLVTTIITIAAALSAVLAVVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLSTFLWASTVLVLLTLGLIYEWLQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9645..9993
location: region:9645-9993:1
so has part: feature:9645-9993:1:exon

YP_003595299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9645-9993:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Arg
so part of: sequence
location: 9994..10062
location: region:9994-10062:1
so has part: feature:9994-10062:1:region

position:9994:1
position: 9994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10062:1
position: 10062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9994-10062:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: ND4L
so part of: sequence
location: 10064..10360
location: region:10064-10360:1
so has part: feature:10064-10360:1:exon
subclass of: SO_0000010

9086883
type: Gene
SIO_000068: ncbigene

position:10064:1
position: 10064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10360:1
position: 10360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10064-10360:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFAFSTTFMLGLTGLAFHRTHLLSALLCLEAMMLSLFIALSIWTLQLDSTNFSASPMLLLAFSACEASAGLALLVATSRTHGSDRLQSLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10064..10360
location: region:10064-10360:1
so has part: feature:10064-10360:1:exon

YP_003595300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10064-10360:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: ND4
so part of: sequence
location: 10354..11734
location: region:10354-11734:1
so has part: feature:10354-11734:1:exon
subclass of: SO_0000010

9086882
type: Gene
SIO_000068: ncbigene

position:10354:1
position: 10354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11734:1
position: 11734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10354-11734:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11734,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLMLVPTTWLXPPKWLWPTTLAHSLIIALASLTWLESLSETGWTSLNLYMATDPLSTPLLVLTCWLLPLMILASQNHTAQEPINRQRMYITLLTSLQFFLILAFSATEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSLLTLQYAPPLQLMSYADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMIMLEPLTKELSYPFIVFALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMVLPLMTTWWFIASLANLALPPLPNLMGEIMILTSLFNWSHWTLALTGAGTLITAGYSLYMFLMTQRGPLPAHIIALDPSHSREHLLIALHLLPLILLILKPELIWGWTA
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10354..11734
location: region:10354-11734:1
so has part: feature:10354-11734:1:exon

YP_003595301.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10354-11734:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-His
so part of: sequence
location: 11735..11804
location: region:11735-11804:1
so has part: feature:11735-11804:1:region

position:11735:1
position: 11735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11804:1
position: 11804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11735-11804:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11805..11872
location: region:11805-11872:1
so has part: feature:11805-11872:1:region

position:11805:1
position: 11805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11872:1
position: 11872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11805-11872:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11877..11949
location: region:11877-11949:1
so has part: feature:11877-11949:1:region

position:11877:1
position: 11877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11949:1
position: 11949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11877-11949:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: ND5
so part of: sequence
location: 11950..13788
location: region:11950-13788:1
so has part: feature:11950-13788:1:exon
subclass of: SO_0000010

9086881
type: Gene
SIO_000068: ncbigene

position:11950:1
position: 11950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13788:1
position: 13788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11950-13788:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHPTSLMMTTSLIIIFSLLAYHVFTTLSPRPQAPDWALTQVKTAVKLAFFVSLLPLFLFMNEGAEAIITNWTWMNTLTFDINISLKFXHYSIIXTPIALYVTWSILEFASWYMHADPFMNRFFKYLLVFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAVVYNRVGDIGLILAMAWMATNLNSWEMQQMFVTAKNFDLTLPLLGLIVAATGKSAQXGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRMSPLMENNQTALTLCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHHLTPFTSSCLTLGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAIYSLRVVFFVSMGHPRFNSLSPINENNPAVINPIKRLAWGSIIAGLLITSNITPLKTPVMSMPPLLKLAALAVTILGLIIALELASLTSKQFKPTPMLTTHHFSNMLGFFPHIIHRFTPKLNLVLGQAIASQMVDQTWLEKSGPKALATSNLPLITTTSNAQQGMIKTYLALFLLTLTFATLLISY
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11950..13788
location: region:11950-13788:1
so has part: feature:11950-13788:1:exon

YP_003595302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11950-13788:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: ND6
so part of: sequence
location: complement(13785..14306)
location: region:13785-14306:-1
so has part: feature:13785-14306:-1:exon
subclass of: SO_0000010

9086880
type: Gene
SIO_000068: ncbigene

position:13785:-1
position: 13785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14306:-1
position: 14306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13785-14306:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTYMMCLLLFGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPETWGSPAVVLYMVIYGVGVILACTALWGGWYEVSWVPADDMEEFAVFRGDVGGVALMYSLGGGMLVISAWVLLLTLFVVLELTRGLSRGTVRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13785..14306)
location: region:13785-14306:-1
so has part: feature:13785-14306:-1:exon

YP_003595303.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13785-14306:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Gln
so part of: sequence
location: complement(14308..14376)
location: region:14308-14376:-1
so has part: feature:14308-14376:-1:region

position:14308:-1
position: 14308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14376:-1
position: 14376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14308-14376:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 8240
gene: CYTB
so part of: sequence
location: 14381..15521
location: region:14381-15521:1
so has part: feature:14381-15521:1:exon
subclass of: SO_0000010

9086879
type: Gene
SIO_000068: ncbigene

position:14381:1
position: 14381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15521:1
position: 15521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14381-15521:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8240
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15521,aa:TERM)
transl table: 2
product: cytochrome b
translation: MASLRKTHPLLKIANDALVDLPTPSNISAWWNFGSLLGLCLISQILTGLFLAMHYTPDVESAFASVAHICRDVNFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLYXETWNIGVVLLLLVMXTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGTTLVEWIWGGFSVDNATLTRFFAFHFLFPFVIAAMTILHLLFLHETGSNNPIGLNSNADKISFHPYFSYKDLLGFVILLVALASLALFSPNLLGXPDNFTPANPMVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMVVPFLHTSKQRTLTFRPVSXFLFWTLIADVAILTWIGGMPAEQPFIIIGQVASVLYFSLFLVFFPLAGWAENKILGWS
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14381..15521
location: region:14381-15521:1
so has part: feature:14381-15521:1:exon

YP_003595304.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14381-15521:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Thr
so part of: sequence
location: 15522..15593
location: region:15522-15593:1
so has part: feature:15522-15593:1:region

position:15522:1
position: 15522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15593:1
position: 15593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15522-15593:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8240
product: tRNA-Pro
so part of: sequence
location: complement(15593..15662)
location: region:15593-15662:-1
so has part: feature:15593-15662:-1:region

position:15593:-1
position: 15593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15662:-1
position: 15662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15593-15662:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 8240
so part of: sequence
location: 15663..16527
location: region:15663-16527:1
so has part: feature:15663-16527:1:region

position:15663:1
position: 15663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15663-16527:1:region