Phocaeicola vulgatus strain MG01-10 plasmid pMG01-10_2, complete sequence.
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola.
Complete genome sequences of three Phocaeicola vulgatus isolated from a healthy Japanese individual
Submitted (29-OCT-2021) Contact:Kaori Tanaka Gifu University; Yanagido, Gifu 501-1194, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP025242.1.\nAnnotated by DFAST https://dfast.ddbj.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler\nGenome Coverage :: 100x\nSequencing Technology :: Illumina Miseq; Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 07:44:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,159\nCDSs (total) :: 4,049\nGenes (coding) :: 3,964\nCDSs (with protein) :: 3,964\nGenes (RNA) :: 110\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 87\nncRNAs :: 2\nPseudo Genes (total) :: 85\nCDSs (without protein) :: 85\nPseudo Genes (ambiguous residues) :: 0 of 85\nPseudo Genes (frameshifted) :: 30 of 85\nPseudo Genes (incomplete) :: 61 of 85\nPseudo Genes (internal stop) :: 22 of 85\nPseudo Genes (multiple problems) :: 21 of 85\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005799237.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016274503.1
COORDINATES: similar to AA sequence:RefSeq:WP_005812785.1
COORDINATES: similar to AA sequence:RefSeq:WP_005799258.1
COORDINATES: similar to AA sequence:RefSeq:WP_005799260.1
COORDINATES: similar to AA sequence:RefSeq:WP_005799262.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008771457.1