Vagococcus lutrae strain AT46b plasmid pAT46b-a, complete sequence.
type: Entry
definition: Vagococcus lutrae strain AT46b plasmid pAT46b-a, complete sequence.
sequence version: NZ_CP097018.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP097018.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN28025464
keyword: RefSeq
source: Vagococcus lutrae
organism: Vagococcus lutrae
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Vagococcus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP097018.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.5.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x, 100x\nSequencing Technology :: Illumina MiniSeq, Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 06:00:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,010\nCDSs (total) :: 1,936\nGenes (coding) :: 1,925\nCDSs (with protein) :: 1,925\nGenes (RNA) :: 74\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 4 of 11\nPseudo Genes (incomplete) :: 5 of 11\nPseudo Genes (internal stop) :: 2 of 11\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 19187
topology: circular
so has quality: SO_0000988
location: 1..19187
location: region:1-19187:1
RO_0002162: 81947

NZ_CP097018
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN28025464
type: BioSample
SIO_000068: biosample

1
title: Florfenicol-resistant Enterococci from pet food
author: Biggel, M.
journal: Unpublished

2
title: Direct Submission
author: Biggel, M.
journal: Submitted (02-MAY-2022) Institute for Food Safety and Hygiene, University of Zurich, Winterthurerstrasse 272, Zurich 8057, Switzerland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19187:1
position: 19187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19187:1:source
so part of: sequence
organism: Vagococcus lutrae
mol type: genomic DNA
strain: AT46b
isolation source: pet food (BARF)
plasmid: pAT46b-a
collection date: 2022
collected by: ILS, University of Zurich

81947
type: Taxonomy
SIO_000068: taxonomy

M2919_RS09925
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
gene: optrA
locus tag: M2919_RS09925
old locus tag: M2919_09925
so part of: sequence
location: complement(139..2106)
location: region:139-2106:-1
so has part: feature:139-2106:-1:exon
subclass of: SO_0000010

72386082
type: Gene
SIO_000068: ncbigene

position:139:-1
position: 139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2106:-1
position: 2106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:139-2106:-1:exon

M2919_RS09925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
gene: optrA
locus tag: M2919_RS09925
old locus tag: M2919_09925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002360182.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC-F type ribosomal protection protein OptrA
translation: MSEATFAIASTNAKEDMKMQYKIINGAVYYDGNMVLENIGIEINDNEKIAIVGRNGCGKTTLLKAIIGEIELEEGTGESEFQVIKTGNPYISYLRQMPFEDESISMVDEVRTVFKTLIDMENKMKQLIDKMENQYDDKIINEYSDISERYMALGGLTYQKEYETMIRSMGFTEADDKKPISEFSGGQRTKIAFIKILLTKPDILLLDEPTNHLDIETIQWLESYLRSYKSTLVIISHDRMFLNRIVDKVYEIEWGETKCYKGNYSAFEEQKRENHIKQQKDYDLQQIEIERITRLIERFRYKPTKAKMVQSKIKLLQRMQILNAPDQYDTKTYMSKFQPRISSSRQVLSASELVIGYDTPLAKVNFNLERGQKLGIVGSNGIGKSTLLKTLMGGVAALSGDFKFGYNVEISYFDQQLAQISGDDTLFEIFQSEYPELNDTEVRTALGSFQFSGDDVFRPVSSLSGGEKVRLTLCKLLYKRTNVLILDEPTNHMDIIGKENLENILCSYQGTIIFVSHDRYFTNKIADRLLVFDKDGVEFVQSTYGEYEKKRMNSEKPFNNIKVEQKVEKNNTVKGDRNSIEKEKVKKEKRIEKLEVLINQYDEELERLNKIISEPNNSSDYMVLTEIQKSIDDVKRCQGNYFNEWEQLMRELEVM
SIO_010081: M2919_RS09925
subclass of: SO_0000673
so part of: M2919_RS09925
location: complement(139..2106)
location: region:139-2106:-1
so has part: feature:139-2106:-1:exon

WP_089202004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:139-2106:-1:exon

M2919_RS09930
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09930
old locus tag: M2919_09930
so part of: sequence
location: complement(2437..2607)
location: region:2437-2607:-1
so has part: feature:2437-2607:-1:exon
subclass of: SO_0000010

72386083
type: Gene
SIO_000068: ncbigene

position:2437:-1
position: 2437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2607:-1
position: 2607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2437-2607:-1:exon

M2919_RS09930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09930
old locus tag: M2919_09930
inference: COORDINATES: protein motif:HMM:NF024242.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AraC family transcriptional regulator
translation: MGDRFSPRYAKFLLVYTNQSISEISEYLIFNSQSYFTSVFKKETGKTPFEYRKSDL
SIO_010081: M2919_RS09930
subclass of: SO_0000673
so part of: M2919_RS09930
location: complement(2437..2607)
location: region:2437-2607:-1
so has part: feature:2437-2607:-1:exon

WP_105461295.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2437-2607:-1:exon

M2919_RS09935
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
gene: fexA
locus tag: M2919_RS09935
old locus tag: M2919_09935
so part of: sequence
location: complement(2793..4220)
location: region:2793-4220:-1
so has part: feature:2793-4220:-1:exon
subclass of: SO_0000010

72386084
type: Gene
SIO_000068: ncbigene

position:2793:-1
position: 2793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4220:-1
position: 4220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2793-4220:-1:exon

M2919_RS09935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
gene: fexA
locus tag: M2919_RS09935
old locus tag: M2919_09935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_032491576.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chloramphenicol/florfenicol efflux MFS transporter FexA
translation: MKKDSKSKEMIQSEKRGSTRLLMMVLSLSVLVGSITADSVNPVLPLISKALEASKSQVSWIVSGIALVLAIGVPIYGRISDFFELRKLYIFAIMILASGSLLCAIAPNLPLLVLGRMVQGAGMSAIPVLSVIAISKVFPQGKRGGALGIIAGSIGVGTAAGPIFGGVVGQYLGWNALFWFTFLLAIMIVIGAYYALPTIKPAESVGSNKNFDFIGGLFLGLTVGLLLFGITQGETSGFSSFSSLTSLIGSVVALVGFIWRIVTAENPFVPPVLFNNKDYVNTVIIAFFSMFAYFAVLVFVPLLVIEVNGLSSGQAGMILLPGGVAVAILSPFVGRLSDRFGDKRLIITGMTLMGLSTLFLSTYASGASPLLVSVGVLGVGIAFAFTNSPANNAAVSALDADKVGVGMGIFQGALYLGAGTGAGMIGALLSARRDATEPINPLYILDAMSYSDAFLAATGAILIALIAGLGLKKRG
SIO_010081: M2919_RS09935
subclass of: SO_0000673
so part of: M2919_RS09935
location: complement(2793..4220)
location: region:2793-4220:-1
so has part: feature:2793-4220:-1:exon

WP_065813868.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2793-4220:-1:exon

M2919_RS09940
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09940
old locus tag: M2919_09940
so part of: sequence
location: complement(4474..4617)
location: region:4474-4617:-1
so has part: feature:4474-4617:-1:exon
subclass of: SO_0000010

72386085
type: Gene
SIO_000068: ncbigene

position:4474:-1
position: 4474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4617:-1
position: 4617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4474-4617:-1:exon

M2919_RS09940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09940
old locus tag: M2919_09940
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGIDFINVEFRKHVKVSGDLGTTGSVCPFSQKQKMETLPENFLPPFI
SIO_010081: M2919_RS09940
subclass of: SO_0000673
so part of: M2919_RS09940
location: complement(4474..4617)
location: region:4474-4617:-1
so has part: feature:4474-4617:-1:exon

WP_002360221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4474-4617:-1:exon

M2919_RS09945
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09945
old locus tag: M2919_09945
pseudo: true
so part of: sequence
location: <5071..5196
location: region:5071-5196:1
so has part: feature:5071-5196:1:exon
subclass of: SO_0000010

72386086
type: Gene
SIO_000068: ncbigene

position:5071:1
position: 5071
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:5196:1
position: 5196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5071-5196:1:exon

M2919_RS09945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09945
old locus tag: M2919_09945
inference: COORDINATES: protein motif:HMM:NF015935.2
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: JAB domain-containing protein
SIO_010081: M2919_RS09945
subclass of: SO_0000673
so part of: M2919_RS09945
location: <5071..5196
location: region:5071-5196:1
so has part: feature:5071-5196:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5071-5196:1:exon

M2919_RS09950
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09950
old locus tag: M2919_09950
so part of: sequence
location: 5324..5761
location: region:5324-5761:1
so has part: feature:5324-5761:1:exon
subclass of: SO_0000010

72386087
type: Gene
SIO_000068: ncbigene

position:5324:1
position: 5324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5761:1
position: 5761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5324-5761:1:exon

M2919_RS09950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09950
old locus tag: M2919_09950
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTYIIEGHCYLTNESYREKYESKADMINGLKSWFKRDDINVTEEEFHQVLEEGYFADGYDIIRLEQEHQESTYETDLLQSKIRLMNEYQNEEEFYRIQGLFNQAINVEIIVQTFREVYDSEFQFIGSPYQLYEAINQWIDENIND
SIO_010081: M2919_RS09950
subclass of: SO_0000673
so part of: M2919_RS09950
location: 5324..5761
location: region:5324-5761:1
so has part: feature:5324-5761:1:exon

WP_174116110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5324-5761:1:exon

M2919_RS09955
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09955
old locus tag: M2919_09955
so part of: sequence
location: complement(6002..6373)
location: region:6002-6373:-1
so has part: feature:6002-6373:-1:exon
subclass of: SO_0000010

72386088
type: Gene
SIO_000068: ncbigene

position:6002:-1
position: 6002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6373:-1
position: 6373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6002-6373:-1:exon

M2919_RS09955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09955
old locus tag: M2919_09955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002298758.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSYGENYQDRGMVKWAGFYLSEHTDTLQDQKKTESNRPVQKMQMDVDEIGEVLSKAVLKSRKIVIQIEERDSNGYYRPDIVGMIQGSDELGIYVGGTKVGYDEIRNVAFSNELKWSDMERFKI
SIO_010081: M2919_RS09955
subclass of: SO_0000673
so part of: M2919_RS09955
location: complement(6002..6373)
location: region:6002-6373:-1
so has part: feature:6002-6373:-1:exon

WP_065813869.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6002-6373:-1:exon

M2919_RS09960
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09960
old locus tag: M2919_09960
so part of: sequence
location: complement(6397..7386)
location: region:6397-7386:-1
so has part: feature:6397-7386:-1:exon
subclass of: SO_0000010

72386089
type: Gene
SIO_000068: ncbigene

position:6397:-1
position: 6397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7386:-1
position: 7386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6397-7386:-1:exon

M2919_RS09960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09960
old locus tag: M2919_09960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002341710.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: excinuclease ABC subunit A
translation: MQQNHIIRRYVSDDDIHVYSIDELFIRYDKVKNLYGNVDVKLFAKAIMRKILQETGIYTTIGIGDNMLLAKLALDNEAKKNPDMMAEWRYEDVPTKVWTINPITDFWGIGEKTAQNLYKKGIDTIEDLANCNPFLLKESMGAIGVQLHAHANGIDRSRIDQKFKPLEKSVSNSQVLLKDYTDIREIEVIIREMTDLVASRLRKIHAQTECISLRIGYSYTTMLPGFSHQMKIPATANTKQLTEYALKIFREYYIGYEVRSVAISCSKLIYQTSIQLDLFSDPEKLFQQEKLDYLCDEIRNRYGFKALVHASSLLPGATAISRSSKIGGH
SIO_010081: M2919_RS09960
subclass of: SO_0000673
so part of: M2919_RS09960
location: complement(6397..7386)
location: region:6397-7386:-1
so has part: feature:6397-7386:-1:exon

WP_242440380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6397-7386:-1:exon

M2919_RS09965
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09965
old locus tag: M2919_09965
so part of: sequence
location: complement(7428..8108)
location: region:7428-8108:-1
so has part: feature:7428-8108:-1:exon
subclass of: SO_0000010

72386090
type: Gene
SIO_000068: ncbigene

position:7428:-1
position: 7428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8108:-1
position: 8108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7428-8108:-1:exon

M2919_RS09965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09965
old locus tag: M2919_09965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MNHFKGKQFQKDVIIVAVGYYLRYNLSYRDVQEILYNRGINVSHTTVYRWVQEYGKLLYNIWKRKNKQSIYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPRVLVTDKAPSIASAFKKLQAHGFYQRTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMEAIRGLYKKNRKEGTLFGFSVCTEMKILLGIPA
SIO_010081: M2919_RS09965
subclass of: SO_0000673
so part of: M2919_RS09965
location: complement(7428..8108)
location: region:7428-8108:-1
so has part: feature:7428-8108:-1:exon

WP_002389568.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7428-8108:-1:exon

M2919_RS09970
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09970
old locus tag: M2919_09970
so part of: sequence
location: complement(8897..9751)
location: region:8897-9751:-1
so has part: feature:8897-9751:-1:exon
subclass of: SO_0000010

72386091
type: Gene
SIO_000068: ncbigene

position:8897:-1
position: 8897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9751:-1
position: 9751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8897-9751:-1:exon

M2919_RS09970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09970
old locus tag: M2919_09970
inference: COORDINATES: protein motif:HMM:NF019371.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Abi family protein
translation: MIGHMKDKGIKFDLMSESEALNVLKQNTYYYKVTSYRKNYTQQSGMYENLDFAFLADLGKIDMRLRYFILETALDYEHSIKTKLLDLITSDHNEDGYQIVEEFRTKHPSTYKIVMKNLRKNKYLKDMYLKRHSNPAIWVILEVMTFGSLSVFIDFYYEKNKTKSLKPAYNLTKYAKNIRNAAAHSNPLLLNLYEPHSLINVDQSVVSYAHIMGISAEKIVDRKVNDLVSLFYLHSNYCSEGMNKHKKEEGIKLIDRCLRNKEYYEEVYSLQEMLNIFNKCVDYL
SIO_010081: M2919_RS09970
subclass of: SO_0000673
so part of: M2919_RS09970
location: complement(8897..9751)
location: region:8897-9751:-1
so has part: feature:8897-9751:-1:exon

WP_105467880.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8897-9751:-1:exon

M2919_RS09975
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09975
old locus tag: M2919_09975
so part of: sequence
location: complement(9827..10360)
location: region:9827-10360:-1
so has part: feature:9827-10360:-1:exon
subclass of: SO_0000010

72386092
type: Gene
SIO_000068: ncbigene

position:9827:-1
position: 9827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10360:-1
position: 10360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9827-10360:-1:exon

M2919_RS09975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09975
old locus tag: M2919_09975
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEGMTFRQVSDKADIARTTVYTRLKNIEVLNNELYNSYVFMDNNGTRRIRNEKVDEVIEIISSDNFPNNIELSQTVQTEDLIGTDIEAIKTLTEQLEYERDRYEKLFERYTELVDQVQSNSDRLLQITENQQVIMREHKLLDNSDKVHQQEIKEKPKEVIPDEQIKKTSWISKLFGK
SIO_010081: M2919_RS09975
subclass of: SO_0000673
so part of: M2919_RS09975
location: complement(9827..10360)
location: region:9827-10360:-1
so has part: feature:9827-10360:-1:exon

WP_105467843.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9827-10360:-1:exon

M2919_RS09980
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09980
old locus tag: M2919_09980
so part of: sequence
location: complement(10367..11116)
location: region:10367-11116:-1
so has part: feature:10367-11116:-1:exon
subclass of: SO_0000010

72386093
type: Gene
SIO_000068: ncbigene

position:10367:-1
position: 10367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11116:-1
position: 11116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10367-11116:-1:exon

M2919_RS09980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09980
old locus tag: M2919_09980
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MEAQTIDEQQLNQVFKKNVFIQNLDNDLSVVELKIIDFLISKIKPEDTSAMEYHTTFANFYKVMGLSKSGTLKKSIIKALRDLKQKEVVIRDEENNKTRYGSWISYFDIHDDNSVTVKLSEALEPYIINLKEQTHYTKYYLRDISLLKSRYSILMYQLLASHNFKAKAILPADYIVEYFNKSDYPFYRVNDLWLKKAIDEINEKTGMRVRYDVVKKGNKASHVVFTFPTESRRQSVQGKVPMIDWTKGE
SIO_010081: M2919_RS09980
subclass of: SO_0000673
so part of: M2919_RS09980
location: complement(10367..11116)
location: region:10367-11116:-1
so has part: feature:10367-11116:-1:exon

WP_172442040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10367-11116:-1:exon

M2919_RS09985
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09985
old locus tag: M2919_09985
so part of: sequence
location: complement(11491..12171)
location: region:11491-12171:-1
so has part: feature:11491-12171:-1:exon
subclass of: SO_0000010

72386094
type: Gene
SIO_000068: ncbigene

position:11491:-1
position: 11491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12171:-1
position: 12171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11491-12171:-1:exon

M2919_RS09985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09985
old locus tag: M2919_09985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS1216 family transposase
translation: MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGIPA
SIO_010081: M2919_RS09985
subclass of: SO_0000673
so part of: M2919_RS09985
location: complement(11491..12171)
location: region:11491-12171:-1
so has part: feature:11491-12171:-1:exon

WP_001015311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11491-12171:-1:exon

M2919_RS09990
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09990
old locus tag: M2919_09990
so part of: sequence
location: 12861..13571
location: region:12861-13571:1
so has part: feature:12861-13571:1:exon
subclass of: SO_0000010

72386095
type: Gene
SIO_000068: ncbigene

position:12861:1
position: 12861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13571:1
position: 13571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12861-13571:1:exon

M2919_RS09990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09990
old locus tag: M2919_09990
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKRKDSLKISVTTEEKEAMKKKAKDLGFGSVSAFLLDASETYFRLNVDMSVYRKLTREVNYIGKNINALVRRINTDQLITDLDIYMLEKKLDDIYSLIKKEYRRLGRLAFNFTSDKLTEDDTIRMIEAFQKNNLEVPKKVLLEEVYENIHGSFALIIDMIQTSKYQDELIEEYVWDFIHSSAIDNLSDDDLIRLSDKLFKYYEKLRLKAIDLDYHFTDEDWFNLLEIIDEFEEDI
SIO_010081: M2919_RS09990
subclass of: SO_0000673
so part of: M2919_RS09990
location: 12861..13571
location: region:12861-13571:1
so has part: feature:12861-13571:1:exon

WP_231415395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12861-13571:1:exon

M2919_RS09995
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS09995
old locus tag: M2919_09995
so part of: sequence
location: 13636..14739
location: region:13636-14739:1
so has part: feature:13636-14739:1:exon
subclass of: SO_0000010

72386096
type: Gene
SIO_000068: ncbigene

position:13636:1
position: 13636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14739:1
position: 14739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13636-14739:1:exon

M2919_RS09995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS09995
old locus tag: M2919_09995
EC number: 3.1.21.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004258502.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease subunit S
translation: MTKKPIIRFKNYNEDWEQRKVKDIFRVTRGYVLAATKTVKDKSNLMPYPVYSSQTKDQGLMGYYNDYLYENAITWTTDGANAGTVNYREGKFYCTNVCGVLISEEGYANKMVSEALNQVAWKHVSKVGNPKLMNNVMSEVSITIPKNLEEQKEISTFINKIDNLITLHQRKLEALEKTKKSFLQKMFPKKDETKPEIRFAGFTDDWEQRKLGEIIQVNSGKDYKHLNEGEIPVYGTGGYMLSVDEALSYKDAIGLGRKGTINKPYLLKAPFWTVDTLFYSVPINNNDLSFIDTLFQNINWKKYDESTGVPSLSKNSIVKIEKKVPSIEEQEKIGLFFKKISETIALHQRQLEALEKMKKSFLQKMFI
SIO_010081: M2919_RS09995
subclass of: SO_0000673
so part of: M2919_RS09995
location: 13636..14739
location: region:13636-14739:1
so has part: feature:13636-14739:1:exon

WP_231415396.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13636-14739:1:exon

M2919_RS10000
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS10000
old locus tag: M2919_10000
so part of: sequence
location: 14858..15421
location: region:14858-15421:1
so has part: feature:14858-15421:1:exon
subclass of: SO_0000010

72386097
type: Gene
SIO_000068: ncbigene

position:14858:1
position: 14858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15421:1
position: 15421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14858-15421:1:exon

M2919_RS10000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS10000
old locus tag: M2919_10000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001971434.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIFGYARVSSLDQNLDTQIEKLRAANVDKIVSEKVSGVSLEREKLDDLLNMLVKGDTIVVARMDRLGRNTKQLLELVEYLEEKGVFLNILDLGIDTSKPTGKFILTVMSAFAELDRTMIKEKQAAGIELAKRKGVYKGRRKKYNEHHKGIQHALHLRKTTNMSVNEICEITGISRATFYRRMKELRD
SIO_010081: M2919_RS10000
subclass of: SO_0000673
so part of: M2919_RS10000
location: 14858..15421
location: region:14858-15421:1
so has part: feature:14858-15421:1:exon

WP_231415397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14858-15421:1:exon

M2919_RS10005
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS10005
old locus tag: M2919_10005
so part of: sequence
location: 15508..16188
location: region:15508-16188:1
so has part: feature:15508-16188:1:exon
subclass of: SO_0000010

72386098
type: Gene
SIO_000068: ncbigene

position:15508:1
position: 15508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16188:1
position: 16188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15508-16188:1:exon

M2919_RS10005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS10005
old locus tag: M2919_10005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS1216 family transposase
translation: MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGIPA
SIO_010081: M2919_RS10005
subclass of: SO_0000673
so part of: M2919_RS10005
location: 15508..16188
location: region:15508-16188:1
so has part: feature:15508-16188:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15508-16188:1:exon

M2919_RS10010
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS10010
old locus tag: M2919_10010
so part of: sequence
location: 16292..18283
location: region:16292-18283:1
so has part: feature:16292-18283:1:exon
subclass of: SO_0000010

72386099
type: Gene
SIO_000068: ncbigene

position:16292:1
position: 16292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18283:1
position: 18283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16292-18283:1:exon

M2919_RS10010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS10010
old locus tag: M2919_10010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010735398.1
GO function: GO:0008658 - penicillin binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: penicillin-binding transpeptidase domain-containing protein
translation: MNKKIMITGVGVVALVVVTGSGYFFYQQHDKKLQSQAVNQFISGFETKDFETLGKSLREESVEKQGLTKETAIEKYDAIFNGLNITNIISSNTKVEDKSFSVTFNMTTPFGELKNQAYSGKLVKESGTYKIDWNYSLIFPEMKKDDKVYMNTDDPTRGDIIDINKMPLATKHEYPQYGMIPMELGTGEEKANNIQAISKAFDMEESDIEGLLEQSWVNDESFVPIKTVDFNADQSPYEGLTGVISKAVTKRYYPLGEAAAQLIGYTGSVTAEDIEGDSELSGFSDTGKTGLEAQLDKKLRGKAGGKIEIVSKEEEVRKVLVEQKREDGETIRLNIDSSLQKEAFVALNNLAGSTVVTDPSTGALKAVVSSPSYDPNKFILGISQKDYDAYGNNKLNPFLARFATGYAPGSTFKTLTAAIGIDAGITSPEKTHEINGLKWQKDGSWGDYFVTRVSDAVSNVNMNDALIYSDNIYFAMEALEIGQEKYLAGLEKFPFGEKMSVNIPMVGAQISNDDIESEILLGDTAYGQGQLLINPIQQAVMYSVLPNKGRVQYPQLIVGKEAKQEDKIISENAANLVTQALIQTVENPNGTAHVLATGNNNIAAKTGTAEIKEKQDTKGQENSFLLAYDANDGKYLVVSMIEDAKDTSAVRQNQALVQGLANQ
SIO_010081: M2919_RS10010
subclass of: SO_0000673
so part of: M2919_RS10010
location: 16292..18283
location: region:16292-18283:1
so has part: feature:16292-18283:1:exon

WP_231450809.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16292-18283:1:exon

M2919_RS10015
type: Gene
subclass of: SO_0000704
RO_0002162: 81947
locus tag: M2919_RS10015
old locus tag: M2919_10015
so part of: sequence
location: 18453..19133
location: region:18453-19133:1
so has part: feature:18453-19133:1:exon
subclass of: SO_0000010

72386100
type: Gene
SIO_000068: ncbigene

position:18453:1
position: 18453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19133:1
position: 19133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18453-19133:1:exon

M2919_RS10015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81947
locus tag: M2919_RS10015
old locus tag: M2919_10015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPRVLVTDKAPSIASAFKKLQAHGFYQRTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMEAIRGLYKKNRKEGTLFGFSVCTEMKILLGIPA
SIO_010081: M2919_RS10015
subclass of: SO_0000673
so part of: M2919_RS10015
location: 18453..19133
location: region:18453-19133:1
so has part: feature:18453-19133:1:exon

WP_172442041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18453-19133:1:exon