Vidua chalybeata isolate OUT-0048 chromosome 36, bVidCha1 merged haplotype, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua.
REFSEQ INFORMATION: The reference sequence is identical to\nCM049561.1.\nAssembly name: bVidCha1 merged haplotype\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/12/21. The original whole-genome shotgun project has the\naccession JAPVQZ000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-NOV-2021\nAssembly Method :: canu v. 2.1; merfin v. 1.0; purgedups v.\n 1.2.5; salsa v. 2.2\nAssembly Name :: bVidCha1 merged haplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 55.0x\nSequencing Technology :: PacBio Sequel II HiFi; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_026979565.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
G protein-coupled receptor kinase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
zinc finger and BTB domain containing 4, transcript variant X3
zinc finger and BTB domain containing 4, transcript variant X5
zinc finger and BTB domain containing 4, transcript variant X4
zinc finger and BTB domain containing 4, transcript variant X2
zinc finger and BTB domain-containing protein 4
RNA polymerase II subunit A; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
DNA-directed RNA polymerase II subunit RPB1
WD repeat containing antisense to TP53; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
ephrin B3; Derived by automated computational analysis using gene prediction method: Gnomon.
lysine demethylase 6B; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: lysine-specific demethylase 6B
N-alpha-acetyltransferase 38, NatC auxiliary subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
N-alpha-acetyltransferase 38, NatC auxiliary subunit, transcript variant X1
N-alpha-acetyltransferase 38, NatC auxiliary subunit, transcript variant X2
N-alpha-acetyltransferase 38, NatC auxiliary subunit isoform X2
N-alpha-acetyltransferase 38, NatC auxiliary subunit isoform X1
chromodomain helicase DNA binding protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
chromodomain helicase DNA binding protein 3, transcript variant X1
chromodomain helicase DNA binding protein 3, transcript variant X2
chromodomain helicase DNA binding protein 3, transcript variant X3
chromodomain-helicase-DNA-binding protein 3 isoform X1
chromodomain-helicase-DNA-binding protein 3 isoform X3
chromodomain-helicase-DNA-binding protein 3 isoform X2
late endosomal/lysosomal adaptor, MAPK and MTOR activator 4; Derived by automated computational analysis using gene prediction method: Gnomon.
late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
trafficking protein particle complex subunit 14; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking protein particle complex subunit 14, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
trafficking protein particle complex subunit 14, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
trafficking protein particle complex subunit 14 isoform X1
trafficking protein particle complex subunit 14 isoform X3
trafficking protein particle complex subunit 14, transcript variant X2
trafficking protein particle complex subunit 14, transcript variant X3
trafficking protein particle complex subunit 14 isoform X2
mannose-P-dolichol utilization defect 1; Derived by automated computational analysis using gene prediction method: Gnomon.
mannose-P-dolichol utilization defect 1 protein
proline, glutamate and leucine rich protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
proline, glutamate and leucine rich protein 1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: proline-, glutamic acid- and leucine-rich protein 1
small nuclear RNA activating complex polypeptide 2; Derived by automated computational analysis using gene prediction method: Gnomon.
small nuclear RNA activating complex polypeptide 2, transcript variant X2
small nuclear RNA activating complex polypeptide 2, transcript variant X4
small nuclear RNA activating complex polypeptide 2, transcript variant X1
small nuclear RNA activating complex polypeptide 2, transcript variant X3
small nuclear RNA activating complex polypeptide 2, transcript variant X5
snRNA-activating protein complex subunit 2 isoform X2
snRNA-activating protein complex subunit 2 isoform X4
snRNA-activating protein complex subunit 2 isoform X1
snRNA-activating protein complex subunit 2 isoform X3
snRNA-activating protein complex subunit 2 isoform X5
GABA type A receptor-associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
gamma-aminobutyric acid receptor-associated protein
PHD finger protein 23; Derived by automated computational analysis using gene prediction method: Gnomon.
PHD finger protein 23, transcript variant X1
PHD finger protein 23, transcript variant X2
very long-chain specific acyl-CoA dehydrogenase, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
very long-chain specific acyl-CoA dehydrogenase, mitochondrial-like
claudin-7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins
galactose-3-O-sulfotransferase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
cohesin subunit SA-3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802305; Derived by automated computational analysis using gene prediction method: Gnomon.
proline-rich protein 36-like; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 4 subunit mu 1; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 4 subunit mu 1, transcript variant X4
adaptor related protein complex 4 subunit mu 1, transcript variant X3
adaptor related protein complex 4 subunit mu 1, transcript variant X1
adaptor related protein complex 4 subunit mu 1, transcript variant X2
minichromosome maintenance complex component 7; Derived by automated computational analysis using gene prediction method: Gnomon.
minichromosome maintenance complex component 7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
eukaryotic initiation factor 4A-I-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins