Vidua chalybeata isolate OUT-0048 chromosome 35, bVidCha1 merged haplotype, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua.
REFSEQ INFORMATION: The reference sequence is identical to\nCM049560.1.\nAssembly name: bVidCha1 merged haplotype\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/12/21. The original whole-genome shotgun project has the\naccession JAPVQZ000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-NOV-2021\nAssembly Method :: canu v. 2.1; merfin v. 1.0; purgedups v.\n 1.2.5; salsa v. 2.2\nAssembly Name :: bVidCha1 merged haplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 55.0x\nSequencing Technology :: PacBio Sequel II HiFi; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_026979565.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
chromosome 35 C19orf47 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein C19orf47 homolog
uncharacterized LOC128802267; Derived by automated computational analysis using gene prediction method: Gnomon.
phospholipase D family member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
periaxin; Derived by automated computational analysis using gene prediction method: Gnomon.
ryanodine receptor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: ryanodine receptor 1
eukaryotic translation initiation factor 3 subunit K; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 3 subunit K, transcript variant X1
eukaryotic translation initiation factor 3 subunit K isoform X1
eukaryotic translation initiation factor 3 subunit K, transcript variant X2
eukaryotic translation initiation factor 3 subunit K isoform X2
actinin alpha 4; Derived by automated computational analysis using gene prediction method: Gnomon.
galectin 4; Derived by automated computational analysis using gene prediction method: Gnomon.
enoyl-CoA hydratase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
heterogeneous nuclear ribonucleoprotein L; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoprotein L, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
heterogeneous nuclear ribonucleoprotein L isoform X1
heterogeneous nuclear ribonucleoprotein L, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
heterogeneous nuclear ribonucleoprotein L isoform X2
heterogeneous nuclear ribonucleoprotein L, transcript variant X3
heterogeneous nuclear ribonucleoprotein L isoform X3
sirtuin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
NAD-dependent protein deacetylase sirtuin-2 isoform X2
NAD-dependent protein deacetylase sirtuin-2 isoform X1
NAD-dependent protein deacetylase sirtuin-2 isoform X3
NFKB inhibitor beta; Derived by automated computational analysis using gene prediction method: Gnomon.
seryl-tRNA synthetase 2, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: serine--tRNA ligase, mitochondrial
mitochondrial ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Gnomon.
28S ribosomal protein S12, mitochondrial
p21 (RAC1) activated kinase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
p21 (RAC1) activated kinase 4, transcript variant X4
p21 (RAC1) activated kinase 4, transcript variant X5
p21 (RAC1) activated kinase 4, transcript variant X1
p21 (RAC1) activated kinase 4, transcript variant X3
p21 (RAC1) activated kinase 4, transcript variant X2
serine/threonine-protein kinase PAK 4 isoform X1
serine/threonine-protein kinase PAK 4 isoform X2
serine/threonine-protein kinase PAK 4 isoform X3
syncollin; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine rich repeat and fibronectin type III domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine rich repeat and fibronectin type III domain containing 1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
LOW QUALITY PROTEIN: leucine-rich repeat and fibronectin type III domain-containing protein 1
sterile alpha motif domain containing 4B; Derived by automated computational analysis using gene prediction method: Gnomon.
sterile alpha motif domain containing 4B
LOW QUALITY PROTEIN: protein Smaug homolog 2
PAF1 homolog, Paf1/RNA polymerase II complex component; Derived by automated computational analysis using gene prediction method: Gnomon.
PAF1 homolog, Paf1/RNA polymerase II complex component
RNA polymerase II-associated factor 1 homolog
mediator complex subunit 29; Derived by automated computational analysis using gene prediction method: Gnomon.
mediator of RNA polymerase II transcription subunit 29
SPT5 homolog, DSIF elongation factor subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
SPT5 homolog, DSIF elongation factor subunit, transcript variant X1
SPT5 homolog, DSIF elongation factor subunit, transcript variant X2
transcription elongation factor SPT5 isoform X1
transcription elongation factor SPT5 isoform X2
translocase of inner mitochondrial membrane 50; Derived by automated computational analysis using gene prediction method: Gnomon.
translocase of inner mitochondrial membrane 50, transcript variant X3
translocase of inner mitochondrial membrane 50, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
translocase of inner mitochondrial membrane 50, transcript variant X1
translocase of inner mitochondrial membrane 50, transcript variant X2
mitochondrial import inner membrane translocase subunit TIM50 isoform X1
mitochondrial import inner membrane translocase subunit TIM50 isoform X2
mitochondrial import inner membrane translocase subunit TIM50 isoform X3
mitochondrial import inner membrane translocase subunit TIM50 isoform X4
delta like canonical Notch ligand 3; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802231; Derived by automated computational analysis using gene prediction method: Gnomon.
glutaminyl-peptide cyclotransferase like; Derived by automated computational analysis using gene prediction method: Gnomon.
glutaminyl-peptide cyclotransferase like
glutaminyl-peptide cyclotransferase-like protein
F-box protein 46; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
gastric inhibitory polypeptide receptor; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
reticulon 2; Derived by automated computational analysis using gene prediction method: Gnomon.
FosB proto-oncogene, AP-1 transcription factor subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
FosB proto-oncogene, AP-1 transcription factor subunit
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
exocyst complex component 3 like 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
exocyst complex component 3-like protein 2
microtubule affinity regulating kinase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule affinity regulating kinase 4
MAP/microtubule affinity-regulating kinase 4
MAP/microtubule affinity-regulating kinase 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
MAP/microtubule affinity-regulating kinase 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
branched chain keto acid dehydrogenase E1 subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
branched chain keto acid dehydrogenase E1 subunit alpha, transcript variant X1
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial isoform X1
branched chain keto acid dehydrogenase E1 subunit alpha, transcript variant X3
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial isoform X3
branched chain keto acid dehydrogenase E1 subunit alpha, transcript variant X2
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial isoform X2
homeobox protein otx5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
homeobox protein otx5-like, transcript variant X2
homeobox protein otx5-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
histone H3.3A; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 375 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
selenoprotein W; Derived by automated computational analysis using gene prediction method: Gnomon.
NOP53 ribosome biogenesis factor; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: ribosome biogenesis protein NOP53
EH domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: EH domain-containing protein 2
BRD4 interacting chromatin remodeling complex associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
BRD4 interacting chromatin remodeling complex associated protein, transcript variant X2
BRD4 interacting chromatin remodeling complex associated protein, transcript variant X1
BRD4-interacting chromatin-remodeling complex-associated protein isoform X1
BRD4-interacting chromatin-remodeling complex-associated protein isoform X2
NSF attachment protein alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
kaptin, actin binding protein; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 8 member A2; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 8 member A2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
solute carrier family 8 member A2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
uncharacterized PE-PGRS family protein PE_PGRS54-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized PE-PGRS family protein PE_PGRS54-like
uncharacterized LOC128802274; Derived by automated computational analysis using gene prediction method: Gnomon.
ERCC excision repair 1, endonuclease non-catalytic subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
ERCC excision repair 1, endonuclease non-catalytic subunit
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
CLPTM1 regulator of GABA type A receptor forward trafficking; Derived by automated computational analysis using gene prediction method: Gnomon.
CLPTM1 regulator of GABA type A receptor forward trafficking
RELB proto-oncogene, NF-kB subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
CLK4 associating serine/arginine rich protein; Derived by automated computational analysis using gene prediction method: Gnomon.
CLK4 associating serine/arginine rich protein
CLK4-associating serine/arginine rich protein
protein phosphatase 1 regulatory subunit 37; Derived by automated computational analysis using gene prediction method: Gnomon.
protein phosphatase 1 regulatory subunit 37
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: protein phosphatase 1 regulatory subunit 37
NTPase KAP family P-loop domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
NTPase KAP family P-loop domain containing 1
NTPase KAP family P-loop domain-containing protein 1
latent-transforming growth factor beta-binding protein 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
latent-transforming growth factor beta-binding protein 4-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: latent-transforming growth factor beta-binding protein 4-like
potassium channel subfamily K member 6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
potassium channel subfamily K member 6-like
Yip1 interacting factor homolog B, membrane trafficking protein; Derived by automated computational analysis using gene prediction method: Gnomon.
Yip1 interacting factor homolog B, membrane trafficking protein, transcript variant X1
Yip1 interacting factor homolog B, membrane trafficking protein, transcript variant X2
adaptor related protein complex 2 subunit sigma 1; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 2 subunit sigma 1
Rho GTPase activating protein 35; Derived by automated computational analysis using gene prediction method: Gnomon.
splicing factor 3A subunit 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
splicing factor 3A subunit 2-like, transcript variant X2
splicing factor 3A subunit 2-like, transcript variant X4
splicing factor 3A subunit 2-like, transcript variant X3
splicing factor 3A subunit 2-like, transcript variant X1
splicing factor 3A subunit 2-like isoform X1
splicing factor 3A subunit 2-like isoform X2
splicing factor 3A subunit 2-like isoform X4
splicing factor 3A subunit 2-like isoform X3
tubulin folding cofactor B; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA polymerase II subunit I; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA polymerase II subunit I, transcript variant X1
RNA polymerase II subunit I, transcript variant X2
DNA-directed RNA polymerase II subunit RPB9 isoform X1
DNA-directed RNA polymerase II subunit RPB9 isoform X2