Vidua chalybeata isolate OUT-0048 chromosome 34, bVidCha1 merged haplotype, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua.
REFSEQ INFORMATION: The reference sequence is identical to\nCM049559.1.\nAssembly name: bVidCha1 merged haplotype\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/12/21. The original whole-genome shotgun project has the\naccession JAPVQZ000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-NOV-2021\nAssembly Method :: canu v. 2.1; merfin v. 1.0; purgedups v.\n 1.2.5; salsa v. 2.2\nAssembly Name :: bVidCha1 merged haplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 55.0x\nSequencing Technology :: PacBio Sequel II HiFi; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_026979565.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
ferritin heavy chain A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon.
BCL2 associated X, apoptosis regulator; Derived by automated computational analysis using gene prediction method: Gnomon.
CD37 molecule; Derived by automated computational analysis using gene prediction method: Gnomon.
KASH domain containing 5; Derived by automated computational analysis using gene prediction method: Gnomon.
fms related receptor tyrosine kinase 3 ligand; Derived by automated computational analysis using gene prediction method: Gnomon.
fms related receptor tyrosine kinase 3 ligand
aldehyde dehydrogenase 16 family member A1; Derived by automated computational analysis using gene prediction method: Gnomon.
aldehyde dehydrogenase 16 family member A1, transcript variant X1
aldehyde dehydrogenase 16 family member A1, transcript variant X2
aldehyde dehydrogenase family 16 member A1 isoform X1
aldehyde dehydrogenase family 16 member A1 isoform X2
aldehyde dehydrogenase 16 family member A1, transcript variant X3
aldehyde dehydrogenase family 16 member A1 isoform X3
PIH1 domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
PIH1 domain containing 1, transcript variant X1
PIH1 domain containing 1, transcript variant X2
PIH1 domain containing 1, transcript variant X3
PIH1 domain containing 1, transcript variant X4
PIH1 domain-containing protein 1 isoform X1
PIH1 domain-containing protein 1 isoform X2
PIH1 domain-containing protein 1 isoform X3
PIH1 domain-containing protein 1 isoform X4
PIH1 domain containing 1, transcript variant X5
PIH1 domain-containing protein 1 isoform X5
solute carrier family 17 member 7; Derived by automated computational analysis using gene prediction method: Gnomon.
ribosomal protein L13a; Derived by automated computational analysis using gene prediction method: Gnomon.
small nucleolar RNA Z195/SNORD33/SNORD32 family; Derived by automated computational analysis using gene prediction method: cmsearch.
small nucleolar RNA Z195/SNORD33/SNORD32 family
COORDINATES: nucleotide motif:Rfam:14.6:RF00133
Derived by automated computational analysis using gene prediction method: cmsearch.
small nucleolar RNA SNORD34; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00147
dihydrodiol dehydrogenase; Derived by automated computational analysis using gene prediction method: Gnomon.
dihydrodiol dehydrogenase, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
dihydrodiol dehydrogenase, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
dihydrodiol dehydrogenase, transcript variant X3
trans-1,2-dihydrobenzene-1,2-diol dehydrogenase isoform X2
trans-1,2-dihydrobenzene-1,2-diol dehydrogenase isoform X1
branched chain amino acid transaminase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
branched chain amino acid transaminase 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins
branched-chain-amino-acid aminotransferase, mitochondrial isoform X2
branched chain amino acid transaminase 2, transcript variant X1
branched-chain-amino-acid aminotransferase, mitochondrial isoform X1
interleukin 11; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
basic proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Ras interacting protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Ras interacting protein 1, transcript variant X1
Ras interacting protein 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
izumo sperm-oocyte fusion 1; Derived by automated computational analysis using gene prediction method: Gnomon.
izumo sperm-oocyte fusion 1, transcript variant X1
izumo sperm-oocyte fusion 1, transcript variant X2
izumo sperm-egg fusion protein 1 isoform X1
izumo sperm-egg fusion protein 1 isoform X2
isochorismatase domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
isochorismatase domain containing 2, transcript variant X6
isochorismatase domain containing 2, transcript variant X5
isochorismatase domain containing 2, transcript variant X4
isochorismatase domain containing 2, transcript variant X7
isochorismatase domain containing 2, transcript variant X9
isochorismatase domain containing 2, transcript variant X1
isochorismatase domain containing 2, transcript variant X8
isochorismatase domain containing 2, transcript variant X3
isochorismatase domain containing 2, transcript variant X2
isochorismatase domain-containing protein 2 isoform X1
isochorismatase domain-containing protein 2 isoform X2
isochorismatase domain-containing protein 2 isoform X3
isochorismatase domain-containing protein 2 isoform X4
shisa family member 7; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin conjugating enzyme E2 S; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin conjugating enzyme E2 S, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
ubiquitin conjugating enzyme E2 S, transcript variant X2
ubiquitin conjugating enzyme E2 S, transcript variant X3
ubiquitin-conjugating enzyme E2 S isoform X1
ubiquitin-conjugating enzyme E2 S isoform X2
ubiquitin-conjugating enzyme E2 S isoform X3
ubiquitin conjugating enzyme E2 S, transcript variant X4
ubiquitin-conjugating enzyme E2 S isoform X4
ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Gnomon.
HSPA (Hsp70) binding protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
dynein axonemal assembly factor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
dynein axonemal assembly factor 3, transcript variant X6
dynein axonemal assembly factor 3, transcript variant X9
dynein axonemal assembly factor 3, transcript variant X7
dynein axonemal assembly factor 3, transcript variant X10
dynein axonemal assembly factor 3, transcript variant X1
dynein axonemal assembly factor 3, transcript variant X4
dynein axonemal assembly factor 3, transcript variant X3
dynein axonemal assembly factor 3, transcript variant X2
dynein axonemal assembly factor 3 isoform X2
dynein axonemal assembly factor 3 isoform X3
dynein axonemal assembly factor 3 isoform X5
dynein axonemal assembly factor 3, transcript variant X5
dynein axonemal assembly factor 3, transcript variant X8
dynein axonemal assembly factor 3 isoform X1
dynein axonemal assembly factor 3 isoform X4
troponin I3, cardiac type; Derived by automated computational analysis using gene prediction method: Gnomon.
epithelial membrane protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
glutamate ionotropic receptor NMDA type subunit 2D; Derived by automated computational analysis using gene prediction method: Gnomon.
glutamate ionotropic receptor NMDA type subunit 2D
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
potassium voltage-gated channel subfamily C member 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
potassium voltage-gated channel subfamily C member 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins
potassium voltage-gated channel subfamily C member 1-like isoform X1
potassium voltage-gated channel subfamily C member 1-like, transcript variant X2
potassium voltage-gated channel subfamily C member 1-like isoform X2
cathepsin D-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
glycogen [starch] synthase, muscle-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RuvB like AAA ATPase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
polynucleotide kinase 3'-phosphatase; Derived by automated computational analysis using gene prediction method: Gnomon.
bifunctional polynucleotide phosphatase/kinase
potassium voltage-gated channel subfamily A member 7; Derived by automated computational analysis using gene prediction method: Gnomon.
potassium voltage-gated channel subfamily A member 7, transcript variant X2
potassium voltage-gated channel subfamily A member 7, transcript variant X3
potassium voltage-gated channel subfamily A member 7, transcript variant X1
potassium voltage-gated channel subfamily A member 7 isoform X2
potassium voltage-gated channel subfamily A member 7 isoform X1
U1 small nuclear ribonucleoprotein 70 kDa-like; Derived by automated computational analysis using gene prediction method: Gnomon.
U1 small nuclear ribonucleoprotein 70 kDa-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein 70 kDa-like
lin-7 homolog B, crumbs cell polarity complex component; Derived by automated computational analysis using gene prediction method: Gnomon.
lin-7 homolog B, crumbs cell polarity complex component
SR-related CTD associated factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
splicing factor, arginine/serine-rich 19
basic salivary proline-rich protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
basic salivary proline-rich protein 3-like, transcript variant X1
basic salivary proline-rich protein 3-like, transcript variant X2
basic salivary proline-rich protein 3-like isoform X1
translation initiation factor IF-2-like isoform X2
uncharacterized LOC128802193; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802193, transcript variant X7
uncharacterized LOC128802193, transcript variant X6
uncharacterized LOC128802193, transcript variant X1
uncharacterized LOC128802193, transcript variant X3
uncharacterized LOC128802193, transcript variant X2
uncharacterized LOC128802193, transcript variant X4
uncharacterized LOC128802193, transcript variant X5
uncharacterized protein LOC128802193 isoform X1
uncharacterized protein LOC128802193 isoform X3
uncharacterized protein LOC128802193 isoform X4
uncharacterized protein LOC128802193 isoform X2
proline rich 12; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: proline-rich protein 12
synaptotagmin 3; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine rich repeat containing 4B; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 4B
aspartate dehydrogenase domain containing; Derived by automated computational analysis using gene prediction method: Gnomon.
aspartate dehydrogenase domain containing, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
aspartate dehydrogenase domain containing, transcript variant X3
aspartate dehydrogenase domain containing, transcript variant X2
aspartate dehydrogenase domain-containing protein isoform X2
aspartate dehydrogenase domain-containing protein isoform X1
aspartate dehydrogenase domain-containing protein isoform X3
Josephin domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
zinc finger protein 70-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA serine (anticodon GCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC128802133; Derived by automated computational analysis using gene prediction method: Gnomon.
deleted in malignant brain tumors 1 protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
deleted in malignant brain tumors 1 protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 Proteins
scavenger receptor cysteine-rich domain-containing group B protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
scavenger receptor cysteine-rich domain-containing group B protein-like
zinc finger protein 628-like; Derived by automated computational analysis using gene prediction method: Gnomon.
caM kinase-like vesicle-associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
caM kinase-like vesicle-associated protein
butyrophilin subfamily 2 member A2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamine (anticodon CUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
solute carrier family 27 member 5; Derived by automated computational analysis using gene prediction method: Gnomon.
long-chain fatty acid transport protein 5
THAP domain-containing protein 7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: THAP domain-containing protein 7-like
Golgi-associated RAB2B interactor protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Golgi-associated RAB2B interactor protein 3-like, transcript variant X3
Golgi-associated RAB2B interactor protein 3-like, transcript variant X2
Golgi-associated RAB2B interactor protein 3-like, transcript variant X1
Golgi-associated RAB2B interactor protein 3-like isoform X3
Golgi-associated RAB2B interactor protein 3-like isoform X2
Golgi-associated RAB2B interactor protein 3-like isoform X1
zinc finger and BTB domain containing 45; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 45
zinc finger and BTB domain-containing protein 45
tripartite motif containing 28; Derived by automated computational analysis using gene prediction method: Gnomon.
transcription intermediary factor 1-beta
ubiquitin conjugating enzyme E2 M; Derived by automated computational analysis using gene prediction method: Gnomon.
charged multivesicular body protein 2A; Derived by automated computational analysis using gene prediction method: Gnomon.
natterin-3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and SCAN domain-containing protein 22-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and SCAN domain-containing protein 22-like
butyrophilin-like protein 8; Derived by automated computational analysis using gene prediction method: Gnomon.
hydrocephalus-inducing protein homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 14J1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 14J1-like, transcript variant X2
olfactory receptor 14J1-like, transcript variant X1
olfactory receptor 14J1-like, transcript variant X3
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 239-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
zinc finger protein 239-like, transcript variant X7
zinc finger protein 239-like, transcript variant X1
zinc finger protein 239-like, transcript variant X6
zinc finger protein 239-like, transcript variant X5
zinc finger protein 239-like, transcript variant X3
zinc finger protein 239-like, transcript variant X2
zinc finger and SCAN domain-containing protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and SCAN domain-containing protein 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
zinc finger and SCAN domain-containing protein 2-like, transcript variant X2
zinc finger and SCAN domain-containing protein 2-like isoform X1
zinc finger and SCAN domain-containing protein 2-like isoform X2
uncharacterized LOC128802178; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802178, transcript variant X1
uncharacterized LOC128802178, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
zinc finger protein 774-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 774-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
zinc finger protein 774-like, transcript variant X1
uncharacterized LOC128802189; Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 14I1-like; Derived by automated computational analysis using gene prediction method: Gnomon.