Vidua chalybeata isolate OUT-0048 chromosome 33, bVidCha1 merged haplotype, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua.
REFSEQ INFORMATION: The reference sequence is identical to\nCM049558.1.\nAssembly name: bVidCha1 merged haplotype\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/12/21. The original whole-genome shotgun project has the\naccession JAPVQZ000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-NOV-2021\nAssembly Method :: canu v. 2.1; merfin v. 1.0; purgedups v.\n 1.2.5; salsa v. 2.2\nAssembly Name :: bVidCha1 merged haplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 55.0x\nSequencing Technology :: PacBio Sequel II HiFi; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_026979565.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
uncharacterized LOC128802067; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC128802066; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802063; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802065; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802064; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802060; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802060, transcript variant X2
uncharacterized LOC128802060, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein LOC128802060 isoform X2
uncharacterized protein LOC128802060 isoform X1
olfactory receptor 14C36-like; Derived by automated computational analysis using gene prediction method: Gnomon.
endogenous retrovirus group K member 6 Pro protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
endogenous retrovirus group K member 6 Pro protein-like
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
olfactory receptor 6M1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 585A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 198 Proteins
uncharacterized LOC128802124; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 436-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802123; Derived by automated computational analysis using gene prediction method: Gnomon.
adhesion G protein-coupled receptor L1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
adhesion G protein-coupled receptor L1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
adhesion G protein-coupled receptor L1-like, transcript variant X3
adhesion G protein-coupled receptor L1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
adhesion G protein-coupled receptor L1-like isoform X2
adhesion G protein-coupled receptor L1-like isoform X1
uncharacterized LOC128802122; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802122, transcript variant X2
uncharacterized LOC128802122, transcript variant X1
sterile alpha motif domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
sterile alpha motif domain-containing protein 1
mitogen-activated protein kinase kinase 7; Derived by automated computational analysis using gene prediction method: Gnomon.
mitogen-activated protein kinase kinase 7, transcript variant X1
mitogen-activated protein kinase kinase 7, transcript variant X2
dual specificity mitogen-activated protein kinase kinase 7 isoform X1
dual specificity mitogen-activated protein kinase kinase 7 isoform X2
basic proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin like 5; Derived by automated computational analysis using gene prediction method: Gnomon.
fas-binding factor 1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
fas-binding factor 1 homolog, transcript variant X1
fas-binding factor 1 homolog, transcript variant X3
fas-binding factor 1 homolog, transcript variant X4
fas-binding factor 1 homolog, transcript variant X2
fas-binding factor 1 homolog, transcript variant X5
ER membrane protein complex subunit 10; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
interferon regulatory factor 9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
XPA binding protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
XPA binding protein 2, transcript variant X1
pre-mRNA-splicing factor SYF1 isoform X1
XPA binding protein 2, transcript variant X2
pre-mRNA-splicing factor SYF1 isoform X2
protein PET100 homolog, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
protein PET100 homolog, mitochondrial, transcript variant X1
protein PET100 homolog, mitochondrial, transcript variant X3
protein PET100 homolog, mitochondrial, transcript variant X2
protein PET100 homolog, mitochondrial isoform X1
protein PET100 homolog, mitochondrial isoform X3
protein PET100 homolog, mitochondrial isoform X2
Purkinje cell protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking protein particle complex subunit 5; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking protein particle complex subunit 5
macrophage mannose receptor 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
macrophage mannose receptor 1-like, transcript variant X1
macrophage mannose receptor 1-like, transcript variant X3
macrophage mannose receptor 1-like, transcript variant X2
macrophage mannose receptor 1-like isoform X3
macrophage mannose receptor 1-like isoform X1
macrophage mannose receptor 1-like isoform X2
vav guanine nucleotide exchange factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
vav guanine nucleotide exchange factor 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
vav guanine nucleotide exchange factor 1, transcript variant X1
vav guanine nucleotide exchange factor 1, transcript variant X2
complement C3; Derived by automated computational analysis using gene prediction method: Gnomon.
ilvB acetolactate synthase like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: 2-hydroxyacyl-CoA lyase 2
CD209 antigen-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
ecotropic viral integration site 5 like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802042; Derived by automated computational analysis using gene prediction method: Gnomon.
PDZ domain-containing protein GIPC1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
PDZ domain-containing protein GIPC1-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: PDZ domain-containing protein GIPC1-like
DnaJ heat shock protein family (Hsp40) member B1; Derived by automated computational analysis using gene prediction method: Gnomon.
DnaJ heat shock protein family (Hsp40) member B1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins
trans-2,3-enoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Gnomon.
trans-2,3-enoyl-CoA reductase, transcript variant X5
very-long-chain enoyl-CoA reductase isoform X2
trans-2,3-enoyl-CoA reductase, transcript variant X6
trans-2,3-enoyl-CoA reductase, transcript variant X1
trans-2,3-enoyl-CoA reductase, transcript variant X2
trans-2,3-enoyl-CoA reductase, transcript variant X3
trans-2,3-enoyl-CoA reductase, transcript variant X4
very-long-chain enoyl-CoA reductase isoform X1
very-long-chain enoyl-CoA reductase isoform X3
epoxide hydrolase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
bromodomain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
bromodomain containing 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
bromodomain-containing protein 4 isoform X1
bromodomain containing 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
bromodomain-containing protein 4 isoform X2
bromodomain containing 4, transcript variant X4
bromodomain-containing protein 4 isoform X4
bromodomain containing 4, transcript variant X3
bromodomain-containing protein 4 isoform X3
bromodomain containing 4, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
bromodomain-containing protein 4 isoform X5
A-kinase anchoring protein 8; Derived by automated computational analysis using gene prediction method: Gnomon.
A-kinase anchoring protein 8 like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
WIZ zinc finger; Derived by automated computational analysis using gene prediction method: Gnomon.
intercellular adhesion molecule 5; Derived by automated computational analysis using gene prediction method: Gnomon.
tyrosine kinase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
non-receptor tyrosine-protein kinase TYK2
cell division cycle 37, HSP90 cochaperone; Derived by automated computational analysis using gene prediction method: Gnomon.
cell division cycle 37, HSP90 cochaperone
sphingosine-1-phosphate receptor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
patatin like phospholipase domain containing 6; Derived by automated computational analysis using gene prediction method: Gnomon.
patatin like phospholipase domain containing 6, transcript variant X1
patatin like phospholipase domain containing 6, transcript variant X3
patatin like phospholipase domain containing 6, transcript variant X2
patatin like phospholipase domain containing 6, transcript variant X4
patatin like phospholipase domain containing 6, transcript variant X5
patatin like phospholipase domain containing 6, transcript variant X6
patatin-like phospholipase domain-containing protein 6 isoform X1
patatin-like phospholipase domain-containing protein 6 isoform X3
patatin-like phospholipase domain-containing protein 6 isoform X2
patatin-like phospholipase domain-containing protein 6 isoform X4
patatin-like phospholipase domain-containing protein 6 isoform X5
ATPase 13A1; Derived by automated computational analysis using gene prediction method: Gnomon.
endoplasmic reticulum transmembrane helix translocase
coiled-coil-helix-coiled-coil-helix domain containing 5; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil-helix-coiled-coil-helix domain containing 5, transcript variant X1
coiled-coil-helix-coiled-coil-helix domain containing 5, transcript variant X2
coiled-coil-helix-coiled-coil-helix domain-containing protein 5 isoform X1
coiled-coil-helix-coiled-coil-helix domain-containing protein 5 isoform X2
LIM homeobox transcription factor 1-alpha-like; Derived by automated computational analysis using gene prediction method: Gnomon.
LIM homeobox transcription factor 1-alpha-like
olfactomedin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
cell surface glycoprotein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
WD repeat domain 83 opposite strand; Derived by automated computational analysis using gene prediction method: Gnomon.
WD repeat domain 83; Derived by automated computational analysis using gene prediction method: Gnomon.
deoxyhypusine synthase; Derived by automated computational analysis using gene prediction method: Gnomon.
deoxyhypusine synthase, transcript variant X1
deoxyhypusine synthase, transcript variant X3
deoxyhypusine synthase, transcript variant X2
zinc finger protein ZFP2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein ZFP2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 72 Proteins
zinc finger protein ZFP2-like, transcript variant X2
zinc finger protein ZFP2-like isoform X1
zinc finger protein ZFP2-like isoform X2
zinc finger protein 883-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 149 Proteins
retinol dehydrogenase 8; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
peter pan homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
peter pan homolog, transcript variant X4
peter pan homolog, transcript variant X1
peter pan homolog, transcript variant X3
peter pan homolog, transcript variant X2
eukaryotic translation initiation factor 3 subunit G; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 3 subunit G, transcript variant X28
eukaryotic translation initiation factor 3 subunit G, transcript variant X29
eukaryotic translation initiation factor 3 subunit G, transcript variant X32
eukaryotic translation initiation factor 3 subunit G, transcript variant X31
eukaryotic translation initiation factor 3 subunit G, transcript variant X27
eukaryotic translation initiation factor 3 subunit G, transcript variant X26
eukaryotic translation initiation factor 3 subunit G, transcript variant X14
eukaryotic translation initiation factor 3 subunit G, transcript variant X12
eukaryotic translation initiation factor 3 subunit G, transcript variant X17
eukaryotic translation initiation factor 3 subunit G, transcript variant X10
eukaryotic translation initiation factor 3 subunit G, transcript variant X25
eukaryotic translation initiation factor 3 subunit G, transcript variant X30
eukaryotic translation initiation factor 3 subunit G, transcript variant X23
eukaryotic translation initiation factor 3 subunit G, transcript variant X24
eukaryotic translation initiation factor 3 subunit G, transcript variant X13
eukaryotic translation initiation factor 3 subunit G, transcript variant X22
eukaryotic translation initiation factor 3 subunit G, transcript variant X16
eukaryotic translation initiation factor 3 subunit G, transcript variant X21
eukaryotic translation initiation factor 3 subunit G, transcript variant X20
eukaryotic translation initiation factor 3 subunit G, transcript variant X19
eukaryotic translation initiation factor 3 subunit G, transcript variant X18
eukaryotic translation initiation factor 3 subunit G, transcript variant X15
eukaryotic translation initiation factor 3 subunit G, transcript variant X9
eukaryotic translation initiation factor 3 subunit G, transcript variant X11
eukaryotic translation initiation factor 3 subunit G, transcript variant X8
eukaryotic translation initiation factor 3 subunit G, transcript variant X7
eukaryotic translation initiation factor 3 subunit G, transcript variant X6
eukaryotic translation initiation factor 3 subunit G, transcript variant X5
eukaryotic translation initiation factor 3 subunit G, transcript variant X1
eukaryotic translation initiation factor 3 subunit G, transcript variant X3
eukaryotic translation initiation factor 3 subunit G, transcript variant X4
eukaryotic translation initiation factor 3 subunit G, transcript variant X2
eukaryotic translation initiation factor 3 subunit G
DNA methyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA methyltransferase 1, transcript variant X2
DNA methyltransferase 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
DNA (cytosine-5)-methyltransferase 1 isoform X2
DNA (cytosine-5)-methyltransferase 1 isoform X1
mucolipin TRP cation channel 1; Derived by automated computational analysis using gene prediction method: Gnomon.
mucolipin TRP cation channel 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
mucolipin TRP cation channel 1, transcript variant X1
zinc finger protein 271-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RAS protein activator like 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
calmodulin-regulated spectrin-associated protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
calmodulin-regulated spectrin-associated protein 3-like
DSN1 component of MIS12 kinetochore complex; Derived by automated computational analysis using gene prediction method: Gnomon.
DSN1 component of MIS12 kinetochore complex
kinetochore-associated protein DSN1 homolog
pre-B-cell leukemia transcription factor 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
pre-B-cell leukemia transcription factor 4-like
lysophosphatidic acid receptor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
lysophosphatidic acid receptor 2, transcript variant X3
lysophosphatidic acid receptor 2 isoform X2
lysophosphatidic acid receptor 2, transcript variant X1
lysophosphatidic acid receptor 2, transcript variant X2
lysophosphatidic acid receptor 2 isoform X1
nucleoredoxin like 1; Derived by automated computational analysis using gene prediction method: Gnomon.
6-phosphogluconolactonase; Derived by automated computational analysis using gene prediction method: Gnomon.
6-phosphogluconolactonase, transcript variant X3
6-phosphogluconolactonase, transcript variant X1
6-phosphogluconolactonase, transcript variant X2
collagen beta(1-O)galactosyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
collagen beta(1-O)galactosyltransferase 1
uncharacterized LOC128802059; Derived by automated computational analysis using gene prediction method: Gnomon.
homeobox-like protein HDP1; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128802058; Derived by automated computational analysis using gene prediction method: Gnomon.