Acanthopagrus latus mitochondrion, complete genome.
type: Entry
definition: Acanthopagrus latus mitochondrion, complete genome.
sequence version: NC_010977.1
sequence date: 2008-12-05
sequence: sequence
division: VRT
label: NC_010977.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA30195
keyword: RefSeq
source: mitochondrion Acanthopagrus latus (yellowfin seabream)
organism: Acanthopagrus latus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from EF506764.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16609
topology: circular
so has quality: SO_0000988
location: 1..16609
location: region:1-16609:1
RO_0002162: 8177

NC_010977
type: RefSeq
SIO_000068: refseq

PRJNA30195
type: BioProject
SIO_000068: bioproject

1
title: Complete mitochondrial DNA sequence of the yellowfin seabream Acanthopagrus latus and a genomic comparison among closely related sparid species
author: Xia, J.
author: Xia, K.
author: Jiang, S.
journal: DNA Seq.
volume: 19
issue: 4
pages: 385-393
year: 2008

2
title: Direct Submission
journal: Submitted (13-JUN-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Xia, J.
author: Jiang, S.
journal: Submitted (19-MAR-2007) South China Sea Fisheries Research Institute, Room 414, CAFS, 231 West Xin-Gang Road, Guangzhou, Guangdong 510300, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16609:1
position: 16609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16609:1:source
so part of: sequence
organism: Acanthopagrus latus
organelle: mitochondrion
mol type: genomic DNA

8177
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Phe
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:region

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8177
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 69..1021
location: region:69-1021:1
so has part: feature:69-1021:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1021:1
position: 1021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1021:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Val
so part of: sequence
location: 1022..1093
location: region:1022-1093:1
so has part: feature:1022-1093:1:region

position:1022:1
position: 1022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1093:1
position: 1093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1022-1093:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8177
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1094..2786
location: region:1094-2786:1
so has part: feature:1094-2786:1:region

position:1094:1
position: 1094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2786:1
position: 2786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1094-2786:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2787..2860
location: region:2787-2860:1
so has part: feature:2787-2860:1:region

position:2787:1
position: 2787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2860:1
position: 2860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2787-2860:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
gene: ND1
so part of: sequence
location: 2861..3835
location: region:2861-3835:1
so has part: feature:2861-3835:1:exon
subclass of: SO_0000010

6383222
type: Gene
SIO_000068: ncbigene

position:2861:1
position: 2861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3835:1
position: 3835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2861-3835:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MLSALFTHLINPLAFIVPILLAVAFLTLLERKVLGYMQHRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPVLFLLAPILALTLALTLWAPMPLPYSVIDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSTIIFTGGFTLQIFNVAQESIWLILPAWPLAAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLGATHLPAFPELTAMNLMTKAALLSVVFLWVRASYPRFRYDQLMHLTWKNFLPLTLAMVIWHLSLPIALAGLPPHL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2861..3835
location: region:2861-3835:1
so has part: feature:2861-3835:1:exon

YP_001974734.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2861-3835:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Ile
so part of: sequence
location: 3840..3909
location: region:3840-3909:1
so has part: feature:3840-3909:1:region

position:3840:1
position: 3840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3909:1
position: 3909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3840-3909:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Gln
so part of: sequence
location: complement(3909..3979)
location: region:3909-3979:-1
so has part: feature:3909-3979:-1:region

position:3909:-1
position: 3909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3979:-1
position: 3979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3909-3979:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Met
so part of: sequence
location: 3979..4048
location: region:3979-4048:1
so has part: feature:3979-4048:1:region

position:3979:1
position: 3979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4048:1
position: 4048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3979-4048:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
gene: ND2
so part of: sequence
location: 4049..5094
location: region:4049-5094:1
so has part: feature:4049-5094:1:exon
subclass of: SO_0000010

6383221
type: Gene
SIO_000068: ncbigene

position:4049:1
position: 4049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5094:1
position: 5094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4049-5094:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5093..5094,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MSPFILATLLFALGLGTTITFASSHWLLAWMGLEINTLAILPLMAQHHHPRAVEATTKYFITQATAAAMLLFASATNAWLTGQWDIQLMTHPLPVTLITLALALKIGLAPLHSWLPEVIQGVDFTTGLILSTWQKLAPFALLLQLQPTNSTLLLALGISSTLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLGVLTLIIYFTMTFSAFLMFKLNNSTNVNSLAISWAKAPVATALAPLILLSLGGLPPLTGFMSKWLILQELTKQELMPLATIAALSALLSLYFYLRLAYALTLTVSPNTLIGITPWRHPTSHLTLSLSASAIATIFLLPISPAVMTLFSL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4049..5094
location: region:4049-5094:1
so has part: feature:4049-5094:1:exon

YP_001974735.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4049-5094:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Trp
so part of: sequence
location: 5095..5165
location: region:5095-5165:1
so has part: feature:5095-5165:1:region

position:5095:1
position: 5095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5165:1
position: 5165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5095-5165:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Ala
so part of: sequence
location: complement(5166..5234)
location: region:5166-5234:-1
so has part: feature:5166-5234:-1:region

position:5166:-1
position: 5166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5234:-1
position: 5234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5166-5234:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Asn
so part of: sequence
location: complement(5238..5310)
location: region:5238-5310:-1
so has part: feature:5238-5310:-1:region

position:5238:-1
position: 5238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5310:-1
position: 5310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5238-5310:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Cys
so part of: sequence
location: complement(5341..5407)
location: region:5341-5407:-1
so has part: feature:5341-5407:-1:region

position:5341:-1
position: 5341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5407:-1
position: 5407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5341-5407:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Tyr
so part of: sequence
location: complement(5408..5477)
location: region:5408-5477:-1
so has part: feature:5408-5477:-1:region

position:5408:-1
position: 5408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5477:-1
position: 5477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5408-5477:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
alternative label: COI
gene: COX1
gene synonym: COI
so part of: sequence
location: 5479..7044
location: region:5479-7044:1
so has part: feature:5479-7044:1:exon
subclass of: SO_0000010

6383220
type: Gene
SIO_000068: ncbigene

position:5479:1
position: 5479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7044:1
position: 7044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5479-7044:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
alternative label: COI
gene: COX1
gene synonym: COI
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWLFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGTIKWETPMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLFSGFTLHDTWTKIHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNSVSSVGSLISLVAVILFLFIVWEAFASKREVHSVEMASTNVEWLHGCPPPYHTFEEPAFVQVKFLIIEKG
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5479..7044
location: region:5479-7044:1
so has part: feature:5479-7044:1:exon

YP_001974736.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5479-7044:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7032..7102)
location: region:7032-7102:-1
so has part: feature:7032-7102:-1:region

position:7032:-1
position: 7032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7102:-1
position: 7102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7032-7102:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Asp
so part of: sequence
location: 7106..7178
location: region:7106-7178:1
so has part: feature:7106-7178:1:region

position:7106:1
position: 7106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7178:1
position: 7178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7106-7178:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
alternative label: COII
gene: COX2
gene synonym: COII
so part of: sequence
location: 7187..7877
location: region:7187-7877:1
so has part: feature:7187-7877:1:exon
subclass of: SO_0000010

6383219
type: Gene
SIO_000068: ncbigene

position:7187:1
position: 7187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7877:1
position: 7877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7187-7877:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
alternative label: COII
gene: COX2
gene synonym: COII
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7877,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVAMVSTKMSDKYILDSQEIEVIWTVLPAFILILIALPSLRILYLMDEINDPHLTIKAVGHQWYWSYEYTDYEDLGFDSYMLPTQDLAPGQFRLLEADHRMVIPVESPIRVLVSAEDVLHSWAVPSIGVKMDAVPGRLNQTTFITSRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFEKWTSLMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7187..7877
location: region:7187-7877:1
so has part: feature:7187-7877:1:exon

YP_001974737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7187-7877:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Lys
so part of: sequence
location: 7878..7952
location: region:7878-7952:1
so has part: feature:7878-7952:1:region

position:7878:1
position: 7878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7952:1
position: 7952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7878-7952:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
gene: ATP8
so part of: sequence
location: 7953..8117
location: region:7953-8117:1
so has part: feature:7953-8117:1:exon
subclass of: SO_0000010

6383218
type: Gene
SIO_000068: ncbigene

position:7953:1
position: 7953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8117:1
position: 8117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7953-8117:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFAILVFSWATFLIILPPKVMAHTFPNEPTFQSTSTPKTQSWTWPW
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7953..8117
location: region:7953-8117:1
so has part: feature:7953-8117:1:exon

YP_001974738.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7953-8117:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
gene: ATP6
so part of: sequence
location: 8111..8794
location: region:8111-8794:1
so has part: feature:8111-8794:1:exon
subclass of: SO_0000010

6383217
type: Gene
SIO_000068: ncbigene

position:8111:1
position: 8111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8794:1
position: 8794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8111-8794:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MMVSFFDQFSSPFLMGIPLMALAMLLPWILLPTPASRWLSNRLLTLQSWFLNMFTRQLLLPINLPGHKWALILASLMIFLLSLNLLGLLPYTFTPTTQLSVNLGLAFPLWLGTVLIGFRNQPNLSLAHMLPEGTPLLLIPILIIIETISLLIRPIALGVRLTANLTAGHLLIQLISTGFFVLLPLMPAVAGLTGILLLMLSLLEVAVAIIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8111..8794
location: region:8111-8794:1
so has part: feature:8111-8794:1:exon

YP_001974739.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8111-8794:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
alternative label: COIII
gene: COX3
gene synonym: COIII
so part of: sequence
location: 8794..9578
location: region:8794-9578:1
so has part: feature:8794-9578:1:exon
subclass of: SO_0000010

6383224
type: Gene
SIO_000068: ncbigene

position:9578:1
position: 9578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8794-9578:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
alternative label: COIII
gene: COX3
gene synonym: COIII
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9577..9578,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAVAALLVTSGTAIWFHFNSTILMSLGMMLLLLTMYQWWRDIIREGTFQGQHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPDLGGYWPPSGVLALDPFEVPLLNTAVLLASGVTVTWAHHSIMEMDRKPAVQSLALTILLGFYFTFLQALEYFEAPFAISDGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8794..9578
location: region:8794-9578:1
so has part: feature:8794-9578:1:exon

YP_001974740.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8794-9578:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Gly
so part of: sequence
location: 9579..9650
location: region:9579-9650:1
so has part: feature:9579-9650:1:region

position:9579:1
position: 9579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9650:1
position: 9650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9579-9650:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
gene: ND3
so part of: sequence
location: 9651..9999
location: region:9651-9999:1
so has part: feature:9651-9999:1:exon
subclass of: SO_0000010

6383223
type: Gene
SIO_000068: ncbigene

position:9651:1
position: 9651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9999:1
position: 9999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9651-9999:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9999,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLVTTIILITTALSIILAIVSFWLPQMSPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLSSPLLTFLWASTVLILLTLGLIYEWLQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9651..9999
location: region:9651-9999:1
so has part: feature:9651-9999:1:exon

YP_001974741.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9651-9999:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Arg
so part of: sequence
location: 10000..10070
location: region:10000-10070:1
so has part: feature:10000-10070:1:region

position:10000:1
position: 10000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10070:1
position: 10070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10000-10070:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
gene: ND4L
so part of: sequence
location: 10072..10368
location: region:10072-10368:1
so has part: feature:10072-10368:1:exon
subclass of: SO_0000010

6383226
type: Gene
SIO_000068: ncbigene

position:10072:1
position: 10072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10368:1
position: 10368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10072-10368:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFTFSSAFLLGLTGLTFHRTHLLSALLCLEGMMLSLFIALSLWALQLGSISFSASPLLLLAFSACEASAGLALLVATARTHGSDRLQTLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10072..10368
location: region:10072-10368:1
so has part: feature:10072-10368:1:exon

YP_001974742.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10072-10368:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
gene: ND4
so part of: sequence
location: 10362..11742
location: region:10362-11742:1
so has part: feature:10362-11742:1:exon
subclass of: SO_0000010

6383228
type: Gene
SIO_000068: ncbigene

position:10362:1
position: 10362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11742:1
position: 11742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10362-11742:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11742,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKVLLPTLMLIPTTWLVPGKWLWPTTLLHSLLIALISFTWLINMSEVGWLSLSPYLATDALSTPLLVLTCWLLPLMILASQNHTATEPLNRQRMYITLLTSLQFFLILAFGATEVIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQSNAGSLSLLTLTYSAPTQLPTYGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAAVLLKLGGYGMMRMLTVLEPLTKELSYPFIIFALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVVGGILIQTPWGFSGALILMVAHGLTSSALFCLANTNYERTHSRTMVLARGLQMVLPLMTAWWFIASLANLALPPLPNLMGELMIIVSLFNWSWWTLALTGTGTLITAGYSLYMFLMTQRGQLPMHIIALEPSHSREHLLMALHLLPLILLTLKPELIWGWSA
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10362..11742
location: region:10362-11742:1
so has part: feature:10362-11742:1:exon

YP_001974743.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10362-11742:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-His
so part of: sequence
location: 11743..11811
location: region:11743-11811:1
so has part: feature:11743-11811:1:region

position:11743:1
position: 11743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11811:1
position: 11811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11743-11811:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11812..11879
location: region:11812-11879:1
so has part: feature:11812-11879:1:region

position:11812:1
position: 11812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11879:1
position: 11879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11812-11879:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11901..11974
location: region:11901-11974:1
so has part: feature:11901-11974:1:region

position:11901:1
position: 11901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11974:1
position: 11974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11901-11974:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
gene: ND5
so part of: sequence
location: 11975..13813
location: region:11975-13813:1
so has part: feature:11975-13813:1:exon
subclass of: SO_0000010

6383225
type: Gene
SIO_000068: ncbigene

position:11975:1
position: 11975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13813:1
position: 13813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11975-13813:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MLSTQLMMSSSLILVLLLLLYPVLTTLNPDPQEDTWALLKVKTAVKMAFFISLLPLFMLLNEGMETIVTSWNWTNTLTFDINISFKFDHYSTIFTPIALYVTWSILEFASWYMHADPYMNRFFKYLLIFLIAMITLVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAVLYNRVGDIGLIFAMAWMAMNINSWEMQQMFATTKDLDLTFPLIGLIVAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRMNPLMENNQTALTTCLCLGALTTVFTATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTMTLLATSFTAVYSLRVVFFVSMGYPRFLPLSPINENNPAVINPIKRLAWGSIVAGLLIISNITPLKTPIMTMPPMLKLAALIVTILGLVLALELASLTNKQFKPTPKLSPHHFSNMLGFFPAVIHRLIPKLGLILGQAIASQTIDQTWLEKVGPKAVTSLNIPLITTVSNTQRGMIKTYLTLFLLTLTLAILLLNI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11975..13813
location: region:11975-13813:1
so has part: feature:11975-13813:1:exon

YP_001974744.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11975-13813:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
gene: ND6
so part of: sequence
location: complement(13810..14331)
location: region:13810-14331:-1
so has part: feature:13810-14331:-1:exon
subclass of: SO_0000010

6383227
type: Gene
SIO_000068: ncbigene

position:13810:-1
position: 13810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14331:-1
position: 14331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13810-14331:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MSFFMSLLLLGLVLGLVVVASNPSPYFAALGLVAAAGVGCGILVWHGGSFLCFILFLIYLGGMLVVFAYCAALAADSHWESLGSRSVAVSLSAYGAAVGVFVVILHGGWYKSSWLTAEEFNELVMHRGDAVGVATMYLAGGKMLMIAAWTLLLTLFVVMELVRGMSRGTLRSI
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13810..14331)
location: region:13810-14331:-1
so has part: feature:13810-14331:-1:exon

YP_001974745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13810-14331:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Glu
so part of: sequence
location: complement(14332..14400)
location: region:14332-14400:-1
so has part: feature:14332-14400:-1:region

position:14332:-1
position: 14332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14400:-1
position: 14400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14332-14400:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 8177
gene: CYTB
so part of: sequence
location: 14405..15524
location: region:14405-15524:1
so has part: feature:14405-15524:1:exon
subclass of: SO_0000010

6383216
type: Gene
SIO_000068: ncbigene

position:14405:1
position: 14405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15524:1
position: 15524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14405-15524:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8177
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15524,aa:TERM)
transl table: 2
product: cytochrome b
translation: MASLALLKIANHAVVDLPAPSNISVWWNFGSLLGLCLISQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGGTLVQWIWGGFSVDNATLTRFFAFHFLLPFIVAAMTMLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLLGFAGVIILLTCLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMVVPMLHTSKQRSLTFRPVTQFLFWTLVANVMILTWIGGMPVEEPYIIIGQIASLTYFSLFLVIIPMAAVVENKVLGWQ
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14405..15524
location: region:14405-15524:1
so has part: feature:14405-15524:1:exon

YP_001974746.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14405-15524:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Thr
so part of: sequence
location: 15525..15596
location: region:15525-15596:1
so has part: feature:15525-15596:1:region

position:15525:1
position: 15525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15596:1
position: 15596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15525-15596:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8177
product: tRNA-Pro
so part of: sequence
location: complement(15596..15666)
location: region:15596-15666:-1
so has part: feature:15596-15666:-1:region

position:15596:-1
position: 15596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15666:-1
position: 15666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15596-15666:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 8177
so part of: sequence
location: 15667..16609
location: region:15667-16609:1
so has part: feature:15667-16609:1:region

position:15667:1
position: 15667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15667-16609:1:region