Bacteroides fragilis strain FDAARGOS_1225 plasmid unnamed, complete sequence.
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (05-FEB-2021) Institute for Genome Sciences, University of Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite 619, Baltimore, MD 21201, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP069564.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 8.0.0, HGAP v. 4\nGenome Coverage :: 905.95x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 21:05:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,350\nCDSs (total) :: 4,251\nGenes (coding) :: 4,193\nCDSs (with protein) :: 4,193\nGenes (RNA) :: 99\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 79\nncRNAs :: 2\nPseudo Genes (total) :: 58\nCDSs (without protein) :: 58\nPseudo Genes (ambiguous residues) :: 0 of 58\nPseudo Genes (frameshifted) :: 23 of 58\nPseudo Genes (incomplete) :: 34 of 58\nPseudo Genes (internal stop) :: 14 of 58\nPseudo Genes (multiple problems) :: 12 of 58\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005868789.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_005868790.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004329304.1
COORDINATES: similar to AA sequence:RefSeq:WP_005775886.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329302.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329300.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329299.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329298.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868794.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_007659510.1
COORDINATES: similar to AA sequence:RefSeq:WP_008777459.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868799.1
COORDINATES: similar to AA sequence:RefSeq:WP_008777460.1
COORDINATES: similar to AA sequence:RefSeq:WP_005648607.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659518.1
COORDINATES: similar to AA sequence:RefSeq:WP_007851284.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276883.1
COORDINATES: similar to AA sequence:RefSeq:WP_008777463.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013611928.1
COORDINATES: similar to AA sequence:RefSeq:WP_010185730.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009276864.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781167.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005868815.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005868817.1
COORDINATES: similar to AA sequence:RefSeq:WP_007569216.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781165.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868823.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781163.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276868.1
COORDINATES: similar to AA sequence:RefSeq:WP_005816149.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868833.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
UpxY family transcription antiterminator
COORDINATES: similar to AA sequence:RefSeq:WP_009275860.1
COORDINATES: similar to AA sequence:RefSeq:WP_004320798.1
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004293531.1
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: similar to AA sequence:RefSeq:WP_005868841.1
CpsB/CapC family capsule biosynthesis tyrosine phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_005868843.1
COORDINATES: similar to AA sequence:RefSeq:WP_008770296.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005868853.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868855.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868857.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868858.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868860.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868861.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868862.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868863.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868864.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868865.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005868866.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868867.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771414.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868870.1
COORDINATES: similar to AA sequence:RefSeq:WP_007564705.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_008781157.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844587.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276853.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844590.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007844591.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868879.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276850.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276849.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276848.1
COORDINATES: protein motif:HMM:NF024393.2
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771420.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771421.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844600.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771423.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771424.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276841.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276840.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771426.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771427.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844614.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005868902.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007844616.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008781143.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771433.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844621.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868910.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844626.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781195.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868748.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771460.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868750.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005868753.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868755.1
COORDINATES: similar to AA sequence:RefSeq:WP_007564662.1
COORDINATES: similar to AA sequence:RefSeq:WP_007568430.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008771441.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781197.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771437.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868761.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868762.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844644.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008771447.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771448.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276895.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868769.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868770.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868772.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844651.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868776.1
COORDINATES: similar to AA sequence:RefSeq:WP_005799262.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008771457.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781192.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868780.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868781.1
COORDINATES: similar to AA sequence:RefSeq:WP_008770288.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844659.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868785.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868786.1
COORDINATES: similar to AA sequence:RefSeq:WP_008770285.1