Rhodoferax antarcticus strain DSMZ24876 plasmid unnamed1.
type: Entry
definition: Rhodoferax antarcticus strain DSMZ24876 plasmid unnamed1.
sequence version: NZ_CP019241.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP019241.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN06118137
keyword: RefSeq
source: Rhodoferax antarcticus
organism: Rhodoferax antarcticus
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP019241.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio SMRT Analysis v. v2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 268.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 01:57:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,977\nCDSs (total) :: 3,917\nGenes (coding) :: 3,751\nCDSs (with protein) :: 3,751\nGenes (RNA) :: 60\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 166\nCDSs (without protein) :: 166\nPseudo Genes (ambiguous residues) :: 0 of 166\nPseudo Genes (frameshifted) :: 53 of 166\nPseudo Genes (incomplete) :: 125 of 166\nPseudo Genes (internal stop) :: 42 of 166\nPseudo Genes (multiple problems) :: 45 of 166\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 31911
topology: linear
so has quality: SO_0000987
location: 1..31911
location: region:1-31911:1
RO_0002162: 81479

NZ_CP019241
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN06118137
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Kim, Y.J.
author: Farh, M.E.-A.
author: Yang, D.-C.
journal: Submitted (13-JAN-2017) College of Health Science, Korea University, Anamro, Seoul 02841, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31911:1
position: 31911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-31911:1:source
so part of: sequence
organism: Rhodoferax antarcticus
mol type: genomic DNA
strain: DSMZ24876
isolation source: environment
culture collection: DSM:24876
type material: type strain of Rhodoferax antarcticus
plasmid: unnamed1
collection date: 1991-01-01

81479
type: Taxonomy
SIO_000068: taxonomy

RA876_RS21590
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS21590
pseudo: true
so part of: sequence
location: complement(<1..>127)
location: region:1-127:-1
so has part: feature:1-127:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:127:-1
position: 127
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-127:-1:exon

RA876_RS21590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS21590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003064423.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: lipocalin-like domain-containing protein
SIO_010081: RA876_RS21590
subclass of: SO_0000673
so part of: RA876_RS21590
location: complement(<1..>127)
location: region:1-127:-1
so has part: feature:1-127:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-127:-1:exon

RA876_RS19090
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19090
old locus tag: RA876_19085
pseudo: true
so part of: sequence
location: complement(339..1117)
location: region:339-1117:-1
so has part: feature:339-1117:-1:exon
subclass of: SO_0000010

position:339:-1
position: 339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1117:-1
position: 1117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:339-1117:-1:exon

RA876_RS19090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19090
old locus tag: RA876_19085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014897603.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ATP-binding cassette domain-containing protein
SIO_010081: RA876_RS19090
subclass of: SO_0000673
so part of: RA876_RS19090
location: complement(339..1117)
location: region:339-1117:-1
so has part: feature:339-1117:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:339-1117:-1:exon

RA876_RS21595
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS21595
so part of: sequence
location: complement(1120..1392)
location: region:1120-1392:-1
so has part: feature:1120-1392:-1:exon
subclass of: SO_0000010

position:1120:-1
position: 1120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1392:-1
position: 1392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1120-1392:-1:exon

RA876_RS21595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS21595
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSHAAGGFREPVRRAPGVVVFAVEPGQLLAKGDLVAEVIDPIEGRVERVVAGVDGLFYARIRDRYITAGGELGKIAGAQAFRSGELLGA
SIO_010081: RA876_RS21595
subclass of: SO_0000673
so part of: RA876_RS21595
location: complement(1120..1392)
location: region:1120-1392:-1
so has part: feature:1120-1392:-1:exon

WP_244899654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1120-1392:-1:exon

RA876_RS21600
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS21600
so part of: sequence
location: complement(1420..1611)
location: region:1420-1611:-1
so has part: feature:1420-1611:-1:exon
subclass of: SO_0000010

position:1420:-1
position: 1420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1611:-1
position: 1611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1420-1611:-1:exon

RA876_RS21600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS21600
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSSAWWQLSEKLQAAGSTAPLPQGCCSTTIELRGELDVSHAWAQQDAQAIAYWLQTLGVLGL
SIO_010081: RA876_RS21600
subclass of: SO_0000673
so part of: RA876_RS21600
location: complement(1420..1611)
location: region:1420-1611:-1
so has part: feature:1420-1611:-1:exon

WP_244899655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1420-1611:-1:exon

RA876_RS21605
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS21605
so part of: sequence
location: complement(1615..2064)
location: region:1615-2064:-1
so has part: feature:1615-2064:-1:exon
subclass of: SO_0000010

position:1615:-1
position: 1615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2064:-1
position: 2064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1615-2064:-1:exon

RA876_RS21605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS21605
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRRADQRRGVLVPVANPIGLAQRLDHKPMGRFELDTSENFNRHYPDLASAVAPVVMNGLTDDAQANVNLVRQAMRDHLQAWTPNTELQSLRKTCCCWRMMPTMCWTCIATAKACCTSTRRALLAANGRAGVLPAQPHHFAGAQFGQPAV
SIO_010081: RA876_RS21605
subclass of: SO_0000673
so part of: RA876_RS21605
location: complement(1615..2064)
location: region:1615-2064:-1
so has part: feature:1615-2064:-1:exon

WP_244899656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1615-2064:-1:exon

RA876_RS21610
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS21610
so part of: sequence
location: complement(2051..2221)
location: region:2051-2221:-1
so has part: feature:2051-2221:-1:exon
subclass of: SO_0000010

position:2051:-1
position: 2051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2221:-1
position: 2221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2051-2221:-1:exon

RA876_RS21610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS21610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSPSLGSFKTLSSFHFGQPGSGTKIYIQASLHAEELPGMLVAHHLRAALEAADAQG
SIO_010081: RA876_RS21610
subclass of: SO_0000673
so part of: RA876_RS21610
location: complement(2051..2221)
location: region:2051-2221:-1
so has part: feature:2051-2221:-1:exon

WP_244899657.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2051-2221:-1:exon

RA876_RS21615
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS21615
so part of: sequence
location: complement(2282..2716)
location: region:2282-2716:-1
so has part: feature:2282-2716:-1:exon
subclass of: SO_0000010

position:2282:-1
position: 2282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2716:-1
position: 2716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2282-2716:-1:exon

RA876_RS21615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS21615
inference: COORDINATES: protein motif:HMM:NF012738.2
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease subunit
translation: MDVFQGTVFCALLAFSLNTAAYTAEMLAGAIRETSAGEIEAAHAYGMSRFQTMLRIVLPSAMRRTLPAYSNEVVMMLHATSLASAVPNMLDVTSAASRIYATYYLPFEAYLAAAAIYLTASFALIGFFRFSEGRLLAYLTPQKH
SIO_010081: RA876_RS21615
subclass of: SO_0000673
so part of: RA876_RS21615
location: complement(2282..2716)
location: region:2282-2716:-1
so has part: feature:2282-2716:-1:exon

WP_244899658.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2282-2716:-1:exon

RA876_RS19105
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19105
old locus tag: RA876_19100
pseudo: true
so part of: sequence
location: complement(2995..3678)
location: region:2995-3678:-1
so has part: feature:2995-3678:-1:exon
subclass of: SO_0000010

position:2995:-1
position: 2995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3678:-1
position: 3678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2995-3678:-1:exon

RA876_RS19105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19105
old locus tag: RA876_19100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013517972.1
GO component: GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO process: GO:0015837 - amine transport [Evidence IEA]
note: The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ABC transporter permease subunit
SIO_010081: RA876_RS19105
subclass of: SO_0000673
so part of: RA876_RS19105
location: complement(2995..3678)
location: region:2995-3678:-1
so has part: feature:2995-3678:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2995-3678:-1:exon

RA876_RS19110
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19110
old locus tag: RA876_19105
pseudo: true
so part of: sequence
location: complement(3710..4480)
location: region:3710-4480:-1
so has part: feature:3710-4480:-1:exon
subclass of: SO_0000010

position:3710:-1
position: 3710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4480:-1
position: 4480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3710-4480:-1:exon

RA876_RS19110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19110
old locus tag: RA876_19105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011463825.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transporter substrate-binding domain-containing protein
SIO_010081: RA876_RS19110
subclass of: SO_0000673
so part of: RA876_RS19110
location: complement(3710..4480)
location: region:3710-4480:-1
so has part: feature:3710-4480:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3710-4480:-1:exon

RA876_RS19115
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19115
old locus tag: RA876_19110
so part of: sequence
location: complement(4623..7250)
location: region:4623-7250:-1
so has part: feature:4623-7250:-1:exon
subclass of: SO_0000010

position:4623:-1
position: 4623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7250:-1
position: 7250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4623-7250:-1:exon

RA876_RS19115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19115
old locus tag: RA876_19110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019653362.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FtsX-like permease family protein
translation: MLAVMLGVALAFSVHLINSSALDEFAQAARSVGGQSDLELRGVQGHFDERLFKTIAQTPGVVVASPLLEVGSYVMTAQGKRSLRVVGVDALSVFGISPDLMPIPQALAPSSNQARQMDRWALFAPGQIFLNAAARRIALPEAPANPPAAGALKLQSGMQWLDVNVAGSVRASGPALAVMDLGAAQDLFDKPGQLTRIDLRLQPGVNREAFARQLQDSPGWPLDVTVALPQEAQSQINNLSRAYRVNLTVLALIALFTGAFLVFSVLSLSVAKRAQQFALLGVLGLSGRNRLKLVLWESLFLGLMGSGLGLALGTALAALALGLLGGDLGSGFFSGATPSLQFSPVAALIYGALGVGAALVGGWWPARAAQLLPPAQTLKGLGNLGVGSKSHWISLFLIAVGALLTWAPPVFGIPLAAYIAIGMLLVGGITALPWLIGLLLGWLAPRLSRQTLPLLAVERARRQRDTAAVAVSGVVAALSLAVALTVMVASFRDSVISWLDRILPADLYVRSSAGMGASDTVYFSPEFVLAAAKLQGVQKLQPQRMVPLSLQASLPAVALLARDLGDPAQSLPLLEAPLPVPPGMIGVYVSQAVVDLYGAQAGQTLPILSKAFRPLAHTGKAPEAIFFVAGVWRDYARQSGSIAIDLGDFQRLTGDRRANDLALWLSDTSNTEALQKELQALAERQSGQASGQRNDPAPAPSVPAAPGNTVAGDAGPSVGGLLEFGTSAQIRAISLKIFDRSFAVTYWLQSVAIAIGLFGIAASFSAQVLSRRKEFGLLAHLGLTRRQILTVVALEGTAWTTLGAIAGLALGLVVAVVLVHVVNPQSFHWTMDLMLPWQKLLALCLAVVAAGTVTAWLAARAAAGKDAVMAVKEDW
SIO_010081: RA876_RS19115
subclass of: SO_0000673
so part of: RA876_RS19115
location: complement(4623..7250)
location: region:4623-7250:-1
so has part: feature:4623-7250:-1:exon

WP_244899659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4623-7250:-1:exon

RA876_RS19120
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19120
old locus tag: RA876_19115
so part of: sequence
location: 7489..9378
location: region:7489-9378:1
so has part: feature:7489-9378:1:exon
subclass of: SO_0000010

position:7489:1
position: 7489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9378:1
position: 9378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7489-9378:1:exon

RA876_RS19120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19120
old locus tag: RA876_19115
inference: COORDINATES: protein motif:HMM:TIGR00254.1
GO function: GO:0009975 - cyclase activity [Evidence IEA]
GO process: GO:0009966 - regulation of signal transduction [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sensor domain-containing diguanylate cyclase
translation: MSISKKKVLSSPPAYALARAYQRLMLLGSVGFLLVVGLTVYDGWQRHMAAEVAVIHQRMHASVIQLKGIIKSATDQITQLASWSNNFPRHAPYQGSGEVRLAIELARKALPGGEVTLDALASLPPAHRLGQLVALPAASQPRAGGLPSDLDLALALVDRLGVDAQTSPCLRWTYFNAASQNLLLIAPWLPKKDLLGSEPSSRRFLQQAWQYEVTTAGLPANNPQRKPYWTRAYQDQAGAGLMISHAAPIYWGDAFVGVVATDVLLGFLDDFLRKFPDQEGLLTISNEQGQILGDRRATLVGQKSIASIDTLLPPHLLEGRTLDHLHADSIGSDLVFSASLDDPHWRIVFQIPKVTLQQRAMEAFSAQLYLSLFLVLVVLIINLLLWRLYVAPALQIADFVASESGGSHPALPKVPRLWQPWLDAMAQAFGDRRRYLAELQQSNEVLEQRVARRTQALQAANARLQALSVTDPLTGAFNRRHLFDLLNSERLRVLRGGEAFSLLMIDLDLFKRVNDAFGHAAGDAVLREFVLRSRAVVRQTDVICRYGGEEFVVLMPAMHQEGAALLGERLRCAMASTPVVFEGAQVAFTVSVGVASYRAGERLEELLSRADHRLYLAKAEGRNRVVCQA
SIO_010081: RA876_RS19120
subclass of: SO_0000673
so part of: RA876_RS19120
location: 7489..9378
location: region:7489-9378:1
so has part: feature:7489-9378:1:exon

WP_075587935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7489-9378:1:exon

RA876_RS19125
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19125
old locus tag: RA876_19120
so part of: sequence
location: 9475..9981
location: region:9475-9981:1
so has part: feature:9475-9981:1:exon
subclass of: SO_0000010

position:9475:1
position: 9475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9981:1
position: 9981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9475-9981:1:exon

RA876_RS19125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19125
old locus tag: RA876_19120
inference: COORDINATES: protein motif:HMM:NF013460.2
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0009055 - electron transfer activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome b/b6 domain-containing protein
translation: MQAFRYAKSQVVLHWVAALVIAVMLLSGTFILSNLPNTPDKVGMLRIHMMMGMLVAVLILTRVVMGRMLPAPPVTVDQKKAHLVHIVLNLAVLLMAASGSVLALQSGLFDVVFGSGALPEDFKVFSARQVHGWVAKGVMALVALHVASALYHQFVLKDGVLARMTFRK
SIO_010081: RA876_RS19125
subclass of: SO_0000673
so part of: RA876_RS19125
location: 9475..9981
location: region:9475-9981:1
so has part: feature:9475-9981:1:exon

WP_075588043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9475-9981:1:exon

RA876_RS19130
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19130
old locus tag: RA876_19125
so part of: sequence
location: complement(10204..10869)
location: region:10204-10869:-1
so has part: feature:10204-10869:-1:exon
subclass of: SO_0000010

position:10204:-1
position: 10204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10869:-1
position: 10869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10204-10869:-1:exon

RA876_RS19130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19130
old locus tag: RA876_19125
inference: COORDINATES: protein motif:HMM:TIGR02595.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PEP-CTERM sorting domain-containing protein
translation: MKRSNISTIIAALTLTVGAAGAAVAAPTYSTFGALPQANFGGSGIPNGAVASSTVGNDGVLGLTATQRYSNPTVTNDGAGLFFAQTGVDQTSASSIASNYARWNFAYYINKGTNTGLTYQLFMDVNPNMGQSFVSIAPPTTQDSWNLGFNAFETGFGYSFDPTIDGVYTFMLTANDANGLRVGMTSIDVQVGNGGNVPEPATLALVGLAIAGMGVARRRKS
SIO_010081: RA876_RS19130
subclass of: SO_0000673
so part of: RA876_RS19130
location: complement(10204..10869)
location: region:10204-10869:-1
so has part: feature:10204-10869:-1:exon

WP_083634035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10204-10869:-1:exon

RA876_RS19135
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
gene: pabB
locus tag: RA876_RS19135
old locus tag: RA876_19130
so part of: sequence
location: complement(11084..13180)
location: region:11084-13180:-1
so has part: feature:11084-13180:-1:exon
subclass of: SO_0000010

position:11084:-1
position: 11084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13180:-1
position: 13180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11084-13180:-1:exon

RA876_RS19135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
gene: pabB
locus tag: RA876_RS19135
old locus tag: RA876_19130
EC number: 2.6.1.85
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011806594.1
GO function: GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]
GO process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO:0008153 - para-aminobenzoic acid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminodeoxychorismate synthase component I
translation: MLAWIDFADPRRPPGTSDTSDTSDASADPAPSGRLRAALAAPLHTLIARTPEQVKPVLDAVEAFARQGLWCVGYLRYEAASAFDSALQTHLADGPLACFGVFAQALPWPDNPATPSSAPLSSAIVSGGKDAGSHTTQPPDANANAGVTVTTTAATTAAATATTTTATAATKTAADPATAAATAVSAAALATSVHWQQALTRERFDAALTTIHDAIGAGEYYQVNYTAPLHGEFSGNPAALFERLQRAQPGGYAAFIDTGAEQLLSVSPELFFDWDGRHILTRPMKGTAPRGVDAASDAALAQALTTSPKERAENVMIVDLLRNDLSRIAQPHSVQVPRLCAVQSLPTVHQMVSDVTAQTRPGTTLAQVFAALFPCGSITGAPKVRAMQTICALEPQPRGVYCGAIGVVRPGGHATFNVAIRTVTLQGAQAYCGIGSGITFDATPANEWQEWQHKRGFLARASVDFQLLETLRLQASEFHNLGAHLARLAGAARHFGYPFDEGRIRASLQTLIYNAALCVSKDTAHQHLDTHPHHAQPDALPSGQNPSDTAWRVRLLLDARGRPSVEKYKLNSAPALITIALAATPFEAHLSEFTRFKTTHRAHYEAYAPVDAALFDTLLYNPHGEITECTRGNIALLLDGQWLTPALHCGLLPGVGRAKFLAEGRLSEAVITLADLPRVQAFAFINSLRGWLPARLQV
SIO_010081: RA876_RS19135
subclass of: SO_0000673
so part of: RA876_RS19135
location: complement(11084..13180)
location: region:11084-13180:-1
so has part: feature:11084-13180:-1:exon

WP_075587933.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11084-13180:-1:exon

RA876_RS19140
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19140
old locus tag: RA876_19135
so part of: sequence
location: complement(13164..13826)
location: region:13164-13826:-1
so has part: feature:13164-13826:-1:exon
subclass of: SO_0000010

position:13164:-1
position: 13164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13826:-1
position: 13826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13164-13826:-1:exon

RA876_RS19140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19140
old locus tag: RA876_19135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007836583.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSLVIQNLSKHYGSVPVFRHVSLNVAPGEFVAIIGESGVGKSTLLNCMAGLDSWDSGSVLLDGLDLSTQSDDQLARLRREKTGFVFQAFHVLPHLSVAQNVALPLMLLGQHDDARVQAMLTEVGLDGLGERLPQQLSGGQLQRVAIARALVHRPMLLLADEPTGNLDPRTAERVMDALVNQTRAHGAAMVLVTHSKTAAARADRTLLLTADGLVDHVGVD
SIO_010081: RA876_RS19140
subclass of: SO_0000673
so part of: RA876_RS19140
location: complement(13164..13826)
location: region:13164-13826:-1
so has part: feature:13164-13826:-1:exon

WP_075587932.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13164-13826:-1:exon

RA876_RS19145
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19145
old locus tag: RA876_19140
so part of: sequence
location: complement(13836..14198)
location: region:13836-14198:-1
so has part: feature:13836-14198:-1:exon
subclass of: SO_0000010

position:13836:-1
position: 13836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14198:-1
position: 14198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13836-14198:-1:exon

RA876_RS19145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19145
old locus tag: RA876_19140
EC number: 3.1.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018439751.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system PemK/MazF family toxin
translation: MVGGKLWVPDRRDMIWIDFNPPIGQEMQDQHPVLVLSPKAFNERTGIVIGLPMTHAGSNETNPFAVKVTTAKGEVAYVLTHQPKTFDWRQRGARSHPWKQLPAALFAAACESLNGIIAIA
SIO_010081: RA876_RS19145
subclass of: SO_0000673
so part of: RA876_RS19145
location: complement(13836..14198)
location: region:13836-14198:-1
so has part: feature:13836-14198:-1:exon

WP_075587931.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13836-14198:-1:exon

RA876_RS19150
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19150
old locus tag: RA876_19145
so part of: sequence
location: complement(14198..14458)
location: region:14198-14458:-1
so has part: feature:14198-14458:-1:exon
subclass of: SO_0000010

position:14458:-1
position: 14458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14198-14458:-1:exon

RA876_RS19150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19150
old locus tag: RA876_19145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011875571.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PbsX family transcriptional regulator
translation: MSPTVSAEQTIQEWGNGLAVRITAPVARAAHFALGLPIRVEVVEEGVLLRAVGAPKLTLAQKLKAFDPDVHGGEAMASGRMGNEVF
SIO_010081: RA876_RS19150
subclass of: SO_0000673
so part of: RA876_RS19150
location: complement(14198..14458)
location: region:14198-14458:-1
so has part: feature:14198-14458:-1:exon

WP_075587930.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14198-14458:-1:exon

RA876_RS19155
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19155
old locus tag: RA876_19150
so part of: sequence
location: 14825..15061
location: region:14825-15061:1
so has part: feature:14825-15061:1:exon
subclass of: SO_0000010

position:14825:1
position: 14825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15061:1
position: 15061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14825-15061:1:exon

RA876_RS19155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19155
old locus tag: RA876_19150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014027687.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AbrB/MazE/SpoVT family DNA-binding domain-containing protein
translation: MQTTVTSKGQVTIPRDVRQQFGLRQGVSVSFTVEGDHIAIRPASSARQAAVSGFGLIRSQRPGVPADFDVAALAVEAP
SIO_010081: RA876_RS19155
subclass of: SO_0000673
so part of: RA876_RS19155
location: 14825..15061
location: region:14825-15061:1
so has part: feature:14825-15061:1:exon

WP_075587929.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14825-15061:1:exon

RA876_RS19160
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19160
old locus tag: RA876_19155
so part of: sequence
location: 15058..15471
location: region:15058-15471:1
so has part: feature:15058-15471:1:exon
subclass of: SO_0000010

position:15058:1
position: 15058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15471:1
position: 15471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15058-15471:1:exon

RA876_RS19160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19160
old locus tag: RA876_19155
inference: COORDINATES: protein motif:HMM:NF013970.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MIGLDTNVLARYYVASPDEGTQQQSALARELIESGKRFFVCKSVVLELEWVLRGYYKSPVADVLTVLRHLLSMPNIEIEDSIAMVAATDALADGFDFADALHHASCRLCRQMLTFDDKKFARRAALKGWKPSVLVVR
SIO_010081: RA876_RS19160
subclass of: SO_0000673
so part of: RA876_RS19160
location: 15058..15471
location: region:15058-15471:1
so has part: feature:15058-15471:1:exon

WP_075587928.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15058-15471:1:exon

RA876_RS19165
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19165
old locus tag: RA876_19160
pseudo: true
so part of: sequence
location: <15543..16200
location: region:15543-16200:1
so has part: feature:15543-16200:1:exon
subclass of: SO_0000010

position:15543:1
position: 15543
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:16200:1
position: 16200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15543-16200:1:exon

RA876_RS19165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19165
old locus tag: RA876_19160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011798713.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: RA876_RS19165
subclass of: SO_0000673
so part of: RA876_RS19165
location: <15543..16200
location: region:15543-16200:1
so has part: feature:15543-16200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15543-16200:1:exon

RA876_RS19170
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19170
old locus tag: RA876_19165
so part of: sequence
location: 16562..18265
location: region:16562-18265:1
so has part: feature:16562-18265:1:exon
subclass of: SO_0000010

position:16562:1
position: 16562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18265:1
position: 18265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16562-18265:1:exon

RA876_RS19170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19170
old locus tag: RA876_19165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011236156.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1634 family transposase
translation: MFIKVTRRGPNRYVQLVEAYRDASTGRPKQRTIASLGRIDQLNTELNSVIAGLQRVTGQTPAALAPATPPVLSFEAARDFGDVYTLTELWNALGFDGLRGVFRHTRHSIDVEALIRVMVFNRLCDPDSKLGVLRWLETVALPGTSLESIDHQHLLRAMDALVDHKAEVDNVMASLLRPLVDQDLAMVFYDMTTIRAAGLSEQEGDLRHYGMAKVGVVERQVMLGVVQTSEGLPLYHEVFDGNTAEVTTIKGVIEKIVARFPIKRVIAVADRGLLSTENLADLQEIVLPGGNKLEFILAVPGRRYGDFVELLEPFHTKQCLPAKEEILGEAAWNKLRLIIAHDPQVSLDAGAKRDKRINELKAQADLWVGKLNDQDAGKKKPGRKLSDGGARAKFYREVCEAHLARIVKVNLKSELFTYDIDERALKHAKMMDGKLLLVTNAPDFTPEEVIKRYRSLADIERGFRVMKSEIEIGPIYHRLPDRIHAHATISFMALILYRVMRSRLRDSNTKISPERALDKLRRIQHQVVKVNDLEPIAALSSINHEHAEILQALTIKKPTLPAQLTLL
SIO_010081: RA876_RS19170
subclass of: SO_0000673
so part of: RA876_RS19170
location: 16562..18265
location: region:16562-18265:1
so has part: feature:16562-18265:1:exon

WP_075586487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16562-18265:1:exon

RA876_RS20545
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS20545
pseudo: true
so part of: sequence
location: complement(<18331..18468)
location: region:18331-18468:-1
so has part: feature:18331-18468:-1:exon
subclass of: SO_0000010

position:18331:-1
position: 18331
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:18468:-1
position: 18468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18331-18468:-1:exon

RA876_RS20545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS20545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008852012.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF4357 domain-containing protein
SIO_010081: RA876_RS20545
subclass of: SO_0000673
so part of: RA876_RS20545
location: complement(<18331..18468)
location: region:18331-18468:-1
so has part: feature:18331-18468:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18331-18468:-1:exon

RA876_RS19175
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19175
old locus tag: RA876_19170
so part of: sequence
location: complement(18505..19878)
location: region:18505-19878:-1
so has part: feature:18505-19878:-1:exon
subclass of: SO_0000010

position:18505:-1
position: 18505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19878:-1
position: 19878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18505-19878:-1:exon

RA876_RS19175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19175
old locus tag: RA876_19170
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLRLNHQLKQTRLHVSRTVRWLFNQKKLATEKHLLRYMLVGLATAFTFTFGHFYETYKQEKPELTASWVLHKVIQADEIVLAVAYAGTTLISLLVCMGLWMLRSAWNANKKIEKLGISIYSKPNSDTNLFLKISNENEIEYKVIGTIIEIAKHPIISPDLGVSGWDCLDKNSIRLLHDFGLPYTKHDIQLIKDIPKPDGNNGTKFSLIETPVDYLDASKILVIRVHKTDYYTIQRFQKYIKDKSIRFSLGSIQPEHHQIPHSLCLHYLVQLTDGHIICIRRKPNVNYAPDQISISGEEQLSSDDIEGIDSDSSMGHWFRRALCEEIFPLRATSTNEIEKNWQKISIHINALRVLSIFYEENFANFSIFGFARLNLNLDEYKSIFRELSRVSPTGRDKEGQLLCLTKIEAKNLIMTGVAKIKPVWGDDAEESIKDEQLHSSSRYRLLVFLQAVGELRD
SIO_010081: RA876_RS19175
subclass of: SO_0000673
so part of: RA876_RS19175
location: complement(18505..19878)
location: region:18505-19878:-1
so has part: feature:18505-19878:-1:exon

WP_075587965.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18505-19878:-1:exon

RA876_RS19180
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19180
old locus tag: RA876_19175
pseudo: true
so part of: sequence
location: complement(19936..>20295)
location: region:19936-20295:-1
so has part: feature:19936-20295:-1:exon
subclass of: SO_0000010

position:19936:-1
position: 19936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20295:-1
position: 20295
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19936-20295:-1:exon

RA876_RS19180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19180
old locus tag: RA876_19175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011795413.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: glutamine--tRNA ligase
SIO_010081: RA876_RS19180
subclass of: SO_0000673
so part of: RA876_RS19180
location: complement(19936..>20295)
location: region:19936-20295:-1
so has part: feature:19936-20295:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19936-20295:-1:exon

RA876_RS19185
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19185
old locus tag: RA876_19180
so part of: sequence
location: complement(20513..20728)
location: region:20513-20728:-1
so has part: feature:20513-20728:-1:exon
subclass of: SO_0000010

position:20513:-1
position: 20513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20728:-1
position: 20728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20513-20728:-1:exon

RA876_RS19185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19185
old locus tag: RA876_19180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005370439.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2283 domain-containing protein
translation: MKISYDKATDSLYIHLADRAAVDSDEVKDGVVLDFDANGALVGIDVQHASVRADLNNPSLSKLPFGELLAA
SIO_010081: RA876_RS19185
subclass of: SO_0000673
so part of: RA876_RS19185
location: complement(20513..20728)
location: region:20513-20728:-1
so has part: feature:20513-20728:-1:exon

WP_075587964.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20513-20728:-1:exon

RA876_RS19190
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19190
old locus tag: RA876_19185
so part of: sequence
location: complement(20768..20968)
location: region:20768-20968:-1
so has part: feature:20768-20968:-1:exon
subclass of: SO_0000010

position:20768:-1
position: 20768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20968:-1
position: 20968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20768-20968:-1:exon

RA876_RS19190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19190
old locus tag: RA876_19185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011811926.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQPAAQKSNHSKVLTAFVEPSLASAAPGQQFQFERHGYFVADRVDHVQGSKPVFNLAVGLKNSWGK
SIO_010081: RA876_RS19190
subclass of: SO_0000673
so part of: RA876_RS19190
location: complement(20768..20968)
location: region:20768-20968:-1
so has part: feature:20768-20968:-1:exon

WP_274534907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20768-20968:-1:exon

RA876_RS19195
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19195
old locus tag: RA876_19190
so part of: sequence
location: complement(20971..21267)
location: region:20971-21267:-1
so has part: feature:20971-21267:-1:exon
subclass of: SO_0000010

position:20971:-1
position: 20971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21267:-1
position: 21267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20971-21267:-1:exon

RA876_RS19195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19195
old locus tag: RA876_19190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014267114.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MTKNLNVVVGSDNVFLDLGFPEAQAQNLLLRADLVVHIRKVIDKLGITQAEAAQRTGITQPRMSDLIKGRTHKFTLDALVNVAAQLGYTVKLSLKKVA
SIO_010081: RA876_RS19195
subclass of: SO_0000673
so part of: RA876_RS19195
location: complement(20971..21267)
location: region:20971-21267:-1
so has part: feature:20971-21267:-1:exon

WP_075587963.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20971-21267:-1:exon

RA876_RS19200
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19200
old locus tag: RA876_19195
so part of: sequence
location: complement(21264..21599)
location: region:21264-21599:-1
so has part: feature:21264-21599:-1:exon
subclass of: SO_0000010

position:21264:-1
position: 21264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21599:-1
position: 21599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21264-21599:-1:exon

RA876_RS19200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19200
old locus tag: RA876_19195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002238686.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MKRIQWLGTSLNTVREFPDDARALIGQEQRMVQSGLMPSDFKPTPTVGSGAYEIRVRSGNQYRVIYVAKFSGSVYVLHSFGKKTPKTTQADLDVAKSRYAAMLIERKERKS
SIO_010081: RA876_RS19200
subclass of: SO_0000673
so part of: RA876_RS19200
location: complement(21264..21599)
location: region:21264-21599:-1
so has part: feature:21264-21599:-1:exon

WP_075587962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21264-21599:-1:exon

RA876_RS19205
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19205
old locus tag: RA876_19200
pseudo: true
so part of: sequence
location: complement(21647..>22021)
location: region:21647-22021:-1
so has part: feature:21647-22021:-1:exon
subclass of: SO_0000010

position:21647:-1
position: 21647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22021:-1
position: 22021
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21647-22021:-1:exon

RA876_RS19205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19205
old locus tag: RA876_19200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011795413.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: glutamine--tRNA ligase
SIO_010081: RA876_RS19205
subclass of: SO_0000673
so part of: RA876_RS19205
location: complement(21647..>22021)
location: region:21647-22021:-1
so has part: feature:21647-22021:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21647-22021:-1:exon

RA876_RS19210
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19210
old locus tag: RA876_19205
pseudo: true
so part of: sequence
location: complement(<22898..>23023)
location: region:22898-23023:-1
so has part: feature:22898-23023:-1:exon
subclass of: SO_0000010

position:22898:-1
position: 22898
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:23023:-1
position: 23023
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22898-23023:-1:exon

RA876_RS19210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19210
old locus tag: RA876_19205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000050481.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase zinc-binding domain-containing protein
SIO_010081: RA876_RS19210
subclass of: SO_0000673
so part of: RA876_RS19210
location: complement(<22898..>23023)
location: region:22898-23023:-1
so has part: feature:22898-23023:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22898-23023:-1:exon

RA876_RS19215
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19215
old locus tag: RA876_19210
so part of: sequence
location: 23031..23228
location: region:23031-23228:1
so has part: feature:23031-23228:1:exon
subclass of: SO_0000010

position:23031:1
position: 23031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23228:1
position: 23228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23031-23228:1:exon

RA876_RS19215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19215
old locus tag: RA876_19210
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLPKRSVGTPGQEIEANRLACRKVNRHRRIEFEELRRYQAAQQQQLELSLQDLTKLSEELGLEL
SIO_010081: RA876_RS19215
subclass of: SO_0000673
so part of: RA876_RS19215
location: 23031..23228
location: region:23031-23228:1
so has part: feature:23031-23228:1:exon

WP_241839274.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23031-23228:1:exon

RA876_RS19220
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19220
old locus tag: RA876_19215
so part of: sequence
location: 23477..24709
location: region:23477-24709:1
so has part: feature:23477-24709:1:exon
subclass of: SO_0000010

position:23477:1
position: 23477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24709:1
position: 24709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23477-24709:1:exon

RA876_RS19220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19220
old locus tag: RA876_19215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011350317.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fic family protein
translation: MLSHKPQPRRTYLWQRTDWPQWRFDAAVLAAPLAQVHRAQGQLMGRMAEQGLAQRDQATLQALTQEVITTSAIEGEALNLSAVRSSIARKLGVDIGEKQEDLAPADRNVEGVVDMVLDATQRHAQPLTPERLFGWHAALFPTGYSGRGRIQVGTWRNDTAGPMQVVSGPVGKEKVHFVAPPASALPTETAAFLQWFNAAPVIPTSDPLIHAALAHLWLVTLHPFDDGNGRISRAVGDMALARAEGLSAAGPPQGASTPQGGSDPRSGGARGHKANQRFYSLSAQIQRERKQYYDQLEATQRGTLDVTPWLGWFLACLLRAVQGADGLLAGVLDKAQFWQRWAGTPMNARQTLVLNRVLDGMEGKLTNAKWAAIGKCSADTALRDINDLLARGVLRKLEGGGRSTGYLLVK
SIO_010081: RA876_RS19220
subclass of: SO_0000673
so part of: RA876_RS19220
location: 23477..24709
location: region:23477-24709:1
so has part: feature:23477-24709:1:exon

WP_075587959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23477-24709:1:exon

RA876_RS19225
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19225
old locus tag: RA876_19220
so part of: sequence
location: 24890..26188
location: region:24890-26188:1
so has part: feature:24890-26188:1:exon
subclass of: SO_0000010

position:24890:1
position: 24890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26188:1
position: 26188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24890-26188:1:exon

RA876_RS19225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19225
old locus tag: RA876_19220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012555993.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MTPEPSPSPNGTIARHAQSRITTALQDTRVVLVVGPRQAGKTTLARLYANSERPYLTLDDPATLAAARADPAGFVRGLKSAVIDEVQRAPDLLLAIKESVDKDQAPGRFLLTGSTNLMALPIVADSLAGRLAVITLLPFAQAELAGAPGDLLDRLFDGDALPPAVNPVVGDALMERVLRGGYPEALRRTSASRRQAWLEDYVALILDRNVRDIANIDQLDRMPRLLDVLAAHAGQLVNHSSYGAALGLTAPTAQKYVGILERLFLLRQIPPWSHNAVSRLTKTPKLHFLDTGLLAALRGDTAAQLQKDRTSYGPLLESFVESEVLKLATWSDQRLRISHFRTKDQDEVDLVLEDRRGRVIGIEVKASATVRPQDLRGLRQLQAAVGDKFVHGLVLHDHDRITPFDEKLHAAPVSMLWEAGVGAPKREKQVAA
SIO_010081: RA876_RS19225
subclass of: SO_0000673
so part of: RA876_RS19225
location: 24890..26188
location: region:24890-26188:1
so has part: feature:24890-26188:1:exon

WP_075587958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24890-26188:1:exon

RA876_RS19230
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19230
old locus tag: RA876_19225
so part of: sequence
location: 26315..26635
location: region:26315-26635:1
so has part: feature:26315-26635:1:exon
subclass of: SO_0000010

position:26315:1
position: 26315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26635:1
position: 26635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26315-26635:1:exon

RA876_RS19230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19230
old locus tag: RA876_19225
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011803374.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative addiction module antidote protein
translation: MNPTAAAQLGIKPFEAADYLQSDEDCAQYLQACMDEAPEDAALFTKAVGDIARARGMMQLARDTGITREGLLKFDTVFPNSWFSRPGLPMNSTTYVDFLVESKKCM
SIO_010081: RA876_RS19230
subclass of: SO_0000673
so part of: RA876_RS19230
location: 26315..26635
location: region:26315-26635:1
so has part: feature:26315-26635:1:exon

WP_083634058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26315-26635:1:exon

RA876_RS19235
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19235
old locus tag: RA876_19230
so part of: sequence
location: 26696..28411
location: region:26696-28411:1
so has part: feature:26696-28411:1:exon
subclass of: SO_0000010

position:26696:1
position: 26696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28411:1
position: 28411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26696-28411:1:exon

RA876_RS19235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19235
old locus tag: RA876_19230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013105737.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1634 family transposase
translation: MFIKVTQSGGRRYAQLVESFRNDEGKPRQRTVCTLGRLESGGDVDTLIASLQRARGIAPAASALDDLRFTDSRHAGDIWALSELWRTLGFDDLATSWRRSKTEIDVLTCLRLMVFNRLCDPGSKLGVLRWLQTVALPAGSGIVTEHQHLLRAMDVLDEHSDKLKLRLATLMRPLIDQDLSVVFYDLTTVAVTGQTDLQDDVRAYGLAKSGLIERQFMLSLVQTCEGLPIAHEVHPGNTAEAKTLLPMIRGLLVRYPLKRVVLIADRGLLSTANIEELDKLQAQLKKDGRDVAVEYILAVPAARYGDFADDLQKLHKGQDATQEWCGETKWSDSRLVVAHDPVAANRRTTARDNTMAELLKLGQQCSVKLDAQDESQRAGQKNKSKGRPMSDSGTKARFYHAVKDAHMAHLIKVDLKADLFSYSIDEDKKRYLELLDGKLLLVTNTNAPAAEVVQRYKSLADIERGFRVLKSDIEIGPVYHRLPQRIRAHALICFMALVLYRVMRMRLKAAKRSESPSTLLESLKRIHQQTVQSGDGKTLAGLTEITPAQKSLFTALDLTPPTPSDLAKPVL
SIO_010081: RA876_RS19235
subclass of: SO_0000673
so part of: RA876_RS19235
location: 26696..28411
location: region:26696-28411:1
so has part: feature:26696-28411:1:exon

WP_075585441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26696-28411:1:exon

RA876_RS21620
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS21620
pseudo: true
so part of: sequence
location: <28477..28590
location: region:28477-28590:1
so has part: feature:28477-28590:1:exon
subclass of: SO_0000010

position:28477:1
position: 28477
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:28590:1
position: 28590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28477-28590:1:exon

RA876_RS21620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS21620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014129874.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transcriptional regulator
SIO_010081: RA876_RS21620
subclass of: SO_0000673
so part of: RA876_RS21620
location: <28477..28590
location: region:28477-28590:1
so has part: feature:28477-28590:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28477-28590:1:exon

RA876_RS19240
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19240
old locus tag: RA876_19235
so part of: sequence
location: complement(28660..30381)
location: region:28660-30381:-1
so has part: feature:28660-30381:-1:exon
subclass of: SO_0000010

position:28660:-1
position: 28660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30381:-1
position: 30381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28660-30381:-1:exon

RA876_RS19240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19240
old locus tag: RA876_19235
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: nuclease-related domain-containing protein
translation: MASQLAELSPLELLIYASLHAFEHWIPKRFGAAAQSDDANDGADWDAVNDILLWKLSACTDEATRLTESVIGQSLAKHLSPFLFPSPAGQPARRDLREAFANLLAAQMELNSFVAQSANAFSYDHSIEFVRLGERLEINVLDVASCAAWHRNGRKLAALHNYWHYRAVDAFVDSGMATRQIGSTANHALNQVAYIKALRTQLQLTEVYGVSDTVTTDAGDTVPLFQALLSLELMNVHFQRDFLEAYMQHLRTTGNWAMALSVMAMNGLRDGNQIRFPLTWSSRDSKVSNMVGWTVTPEFPKGNPRYAAAIVDFWTSDWSKLAAQLQGDAPGQTPELLERPILKMGQTLVQLPWMVSLQNNSTAAINNLRRLGARRNEARAETQRIETQLGAKLEKRGFKVVLNWSPPVAPDGNAGEVDVICARDGTVLVLEVKSTYLRRSQQDAWQHETTTLRNAGRQLQRKVAAVQQALIDQPELAKRLGLETGASAITVCGWIVDTSIECDHQRFGGFLKVSLEELLIALNDNRHLLHDPEGLFSQSAPGDRAEPQSLYPQGFNAQRLNEVVESQAVWDDV
SIO_010081: RA876_RS19240
subclass of: SO_0000673
so part of: RA876_RS19240
location: complement(28660..30381)
location: region:28660-30381:-1
so has part: feature:28660-30381:-1:exon

WP_156876312.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28660-30381:-1:exon

RA876_RS19245
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19245
old locus tag: RA876_19240
so part of: sequence
location: complement(30366..30809)
location: region:30366-30809:-1
so has part: feature:30366-30809:-1:exon
subclass of: SO_0000010

position:30366:-1
position: 30366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30809:-1
position: 30809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30366-30809:-1:exon

RA876_RS19245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19245
old locus tag: RA876_19240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQIDADLVAAAEHTATAYLDGKPVHQGQHKVTRAQRQAAFWSSSYLSNLPAAAWQSQTMMLALAQYLGQERVSNMKMLANVASVAPEVLICAVRCSGLVLTQHSPRRTELDLLAADNPLIAELCKVLDIFDLAHRQRTSAVFMWQAN
SIO_010081: RA876_RS19245
subclass of: SO_0000673
so part of: RA876_RS19245
location: complement(30366..30809)
location: region:30366-30809:-1
so has part: feature:30366-30809:-1:exon

WP_076072377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30366-30809:-1:exon

RA876_RS19250
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS19250
old locus tag: RA876_19245
pseudo: true
so part of: sequence
location: <30892..31101
location: region:30892-31101:1
so has part: feature:30892-31101:1:exon
subclass of: SO_0000010

position:30892:1
position: 30892
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:31101:1
position: 31101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30892-31101:1:exon

RA876_RS19250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS19250
old locus tag: RA876_19245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011485622.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF4172 domain-containing protein
SIO_010081: RA876_RS19250
subclass of: SO_0000673
so part of: RA876_RS19250
location: <30892..31101
location: region:30892-31101:1
so has part: feature:30892-31101:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30892-31101:1:exon

RA876_RS21625
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS21625
old locus tag: RA876_19250
so part of: sequence
location: complement(31328..31636)
location: region:31328-31636:-1
so has part: feature:31328-31636:-1:exon
subclass of: SO_0000010

position:31328:-1
position: 31328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31636:-1
position: 31636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31328-31636:-1:exon

RA876_RS21625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS21625
old locus tag: RA876_19250
inference: COORDINATES: protein motif:HMM:NF021057.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDGVFRILQNQQYGHAADQGAKLYAAFVRKLAATDKDGVELANFFSFTYDTIARKCSKSPTIPVNDLSTDSLRNVQEGQGALTRGLCRASATPLTTRLCRQ
SIO_010081: RA876_RS21625
subclass of: SO_0000673
so part of: RA876_RS21625
location: complement(31328..31636)
location: region:31328-31636:-1
so has part: feature:31328-31636:-1:exon

WP_244899660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31328-31636:-1:exon

RA876_RS21630
type: Gene
subclass of: SO_0000704
RO_0002162: 81479
locus tag: RA876_RS21630
pseudo: true
so part of: sequence
location: complement(31527..>31911)
location: region:31527-31911:-1
so has part: feature:31527-31911:-1:exon
subclass of: SO_0000010

position:31527:-1
position: 31527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31911:-1
position: 31911
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31527-31911:-1:exon

RA876_RS21630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 81479
locus tag: RA876_RS21630
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
pseudo: true
codon start: 2
transl table: 11
product: hypothetical protein
SIO_010081: RA876_RS21630
subclass of: SO_0000673
so part of: RA876_RS21630
location: complement(31527..>31911)
location: region:31527-31911:-1
so has part: feature:31527-31911:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31527-31911:-1:exon