Poecilia reticulata mitochondrion, complete genome.
type: Entry
definition: Poecilia reticulata mitochondrion, complete genome.
sequence version: NC_024238.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_024238.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
dblink: SAMN02404645
keyword: RefSeq
source: mitochondrion Poecilia reticulata (guppy)
organism: Poecilia reticulata
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to KJ460033.\n\n##Assembly-Data-START##\nAssembly Method :: Trinity v. r2012-03-17\nSequencing Technology :: Illumina\n##Assembly-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16538
topology: circular
so has quality: SO_0000988
location: 1..16538
location: region:1-16538:1
RO_0002162: 8081

NC_024238
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

SAMN02404645
type: BioSample
SIO_000068: biosample

1
title: Complete mitochondrial genome of a female high predation Guanapo guppy (Poecilia reticulata)
author: Kunstner, A.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (10-JUN-2014) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Kunstner, A.
journal: Submitted (14-FEB-2014) Department of Molecular Biology (VI), Max Planck Institute for Developmental Biology, Spemannstrasse 37-39, Tubingen 72076, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16538:1
position: 16538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16538:1:source
so part of: sequence
organism: Poecilia reticulata
organelle: mitochondrion
mol type: genomic DNA

8081
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Phe
so part of: sequence
location: 1..69
location: region:1-69:1
so has part: feature:1-69:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-69:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8081
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 70..1017
location: region:70-1017:1
so has part: feature:70-1017:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1017:1
position: 1017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-1017:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Val
so part of: sequence
location: 1018..1088
location: region:1018-1088:1
so has part: feature:1018-1088:1:region

position:1018:1
position: 1018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1088:1
position: 1088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1018-1088:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8081
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1089..2760
location: region:1089-2760:1
so has part: feature:1089-2760:1:region

position:1089:1
position: 1089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2760:1
position: 2760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1089-2760:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Leu
so part of: sequence
location: 2761..2835
location: region:2761-2835:1
so has part: feature:2761-2835:1:region

position:2761:1
position: 2761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2835:1
position: 2835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2761-2835:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: ND1
so part of: sequence
location: 2836..3810
location: region:2836-3810:1
so has part: feature:2836-3810:1:exon
subclass of: SO_0000010

19590702
type: Gene
SIO_000068: ncbigene

position:2836:1
position: 2836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3810:1
position: 3810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2836-3810:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MLSFFLNSILNPLMLIVFILLAVALLTLLERKMLGYMQLRKGPNVVSPYGLLQPFADGLKLFIKEPVRPSTASPFLFLFTPALAFSLALTLWVPMPLPSPLADLNLGILFILALSSLTVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSTILLAGGFTLQTFSTAQEKTWLIFPALPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIILMNTLSATLFLGTTLNYLTPEISSFNLMIKASLLTAMFLWVRASYPRFRYDQLMHLTWKNFLPLTLALVIWHLSLPLAMSSFPPQL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2836..3810
location: region:2836-3810:1
so has part: feature:2836-3810:1:exon

YP_009037662.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2836-3810:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Ile
so part of: sequence
location: 3817..3886
location: region:3817-3886:1
so has part: feature:3817-3886:1:region

position:3817:1
position: 3817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3886:1
position: 3886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3817-3886:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Gln
so part of: sequence
location: complement(3886..3956)
location: region:3886-3956:-1
so has part: feature:3886-3956:-1:region

position:3886:-1
position: 3886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3956:-1
position: 3956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3886-3956:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Met
so part of: sequence
location: 3956..4024
location: region:3956-4024:1
so has part: feature:3956-4024:1:region

position:3956:1
position: 3956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4024:1
position: 4024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3956-4024:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: ND2
so part of: sequence
location: 4025..5069
location: region:4025-5069:1
so has part: feature:4025-5069:1:exon
subclass of: SO_0000010

19590714
type: Gene
SIO_000068: ncbigene

position:4025:1
position: 4025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5069:1
position: 5069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4025-5069:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5069,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MAPPIYSALIISLGLGTTMTFASTHWYLAWMGIEINTLAIIPLMSQNHTPRATEATTKYFFAQATASATLLFASISNAFLTGEWDILQTPNTLTSSLITLALAMKIGLAPLHSWMPEVMQGLSLLNGLILSTWQKLAPLYLIYQIQPTNSNIFITLGLLSIIVGGWGGFNQVQLRKILAYSSIAHLGWMILILSFSPPLALLTILIYLLMTFSLFSSFMLTRTTHINSLATTWAKIPILTISTPLVLLSLGGLPPLTGFMPKWLILQELTKQDLAPIAALAALSSLFSLYFYLRLSYAMTLTMPPNNPAGTLPWRLNTRHNTTMMSLTTTSTICLLPVTPAIMALLPF
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4025..5069
location: region:4025-5069:1
so has part: feature:4025-5069:1:exon

YP_009037663.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4025-5069:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Trp
so part of: sequence
location: 5070..5139
location: region:5070-5139:1
so has part: feature:5070-5139:1:region

position:5070:1
position: 5070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5139:1
position: 5139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5070-5139:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Ala
so part of: sequence
location: complement(5143..5211)
location: region:5143-5211:-1
so has part: feature:5143-5211:-1:region

position:5143:-1
position: 5143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5211:-1
position: 5211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5143-5211:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Asn
so part of: sequence
location: complement(5213..5285)
location: region:5213-5285:-1
so has part: feature:5213-5285:-1:region

position:5213:-1
position: 5213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5285:-1
position: 5285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5213-5285:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Cys
so part of: sequence
location: complement(5322..5388)
location: region:5322-5388:-1
so has part: feature:5322-5388:-1:region

position:5322:-1
position: 5322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5388:-1
position: 5388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5322-5388:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Tyr
so part of: sequence
location: complement(5390..5459)
location: region:5390-5459:-1
so has part: feature:5390-5459:-1:region

position:5390:-1
position: 5390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5459:-1
position: 5459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5390-5459:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: COX1
so part of: sequence
location: 5461..7017
location: region:5461-7017:1
so has part: feature:5461-7017:1:exon
subclass of: SO_0000010

19590713
type: Gene
SIO_000068: ncbigene

position:5461:1
position: 5461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7017:1
position: 7017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5461-7017:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLSSSGVEAGAGTGWTVYPPLASNLAHAGPSVDLTIFSLHLAGISSILGAINFITTIINMKPPAASQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGALKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIVAGFVHWFPLFSGYTLHSTWTKIHFGIMFAGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTISSIGSLISLVAVILFLFIIWEAFAAKREVLSVHLTSTNVEWLHGCPPPYHTFEEPAFVQVQHHNK
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5461..7017
location: region:5461-7017:1
so has part: feature:5461-7017:1:exon

YP_009037664.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5461-7017:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Ser
so part of: sequence
location: complement(7023..7093)
location: region:7023-7093:-1
so has part: feature:7023-7093:-1:region

position:7023:-1
position: 7023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7093:-1
position: 7093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7023-7093:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Asp
so part of: sequence
location: 7096..7166
location: region:7096-7166:1
so has part: feature:7096-7166:1:region

position:7096:1
position: 7096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7166:1
position: 7166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7096-7166:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: COX2
so part of: sequence
location: 7175..7865
location: region:7175-7865:1
so has part: feature:7175-7865:1:exon
subclass of: SO_0000010

19590712
type: Gene
SIO_000068: ncbigene

position:7175:1
position: 7175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7865:1
position: 7865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7175-7865:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7865,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHTLMIVFLISTLVLYIIVTMVVTKLTDKLILDSQEIEIIWTLLPAMILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMIPTQDLTPGQFRLLEADHRMVIPVESPIRVLISADDVLHSWAVPCLGIKMDAVPGRLNQTAFITSRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWSSMMLEDT
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7175..7865
location: region:7175-7865:1
so has part: feature:7175-7865:1:exon

YP_009037665.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7175-7865:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Lys
so part of: sequence
location: 7866..7938
location: region:7866-7938:1
so has part: feature:7866-7938:1:region

position:7866:1
position: 7866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7938:1
position: 7938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7866-7938:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: ATP8
so part of: sequence
location: 7942..8109
location: region:7942-8109:1
so has part: feature:7942-8109:1:exon
subclass of: SO_0000010

19590711
type: Gene
SIO_000068: ncbigene

position:7942:1
position: 7942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8109:1
position: 8109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7942-8109:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLIPTPWLALLIFSWTIFTAIVLPKVLKHSFPDNPTIPSKQNLRENKWDWSWH
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7942..8109
location: region:7942-8109:1
so has part: feature:7942-8109:1:exon

YP_009037666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7942-8109:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: ATP6
so part of: sequence
location: 8100..8783
location: region:8100-8783:1
so has part: feature:8100-8783:1:exon
subclass of: SO_0000010

19590710
type: Gene
SIO_000068: ncbigene

position:8100:1
position: 8100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8783:1
position: 8783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8100-8783:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLSLFDQFLSPVVCWIPLVAIAIMLPWILFPSPTTRWVNNRNLTSQNWFLGQSTSQIFSPINPSGHKWAILLSSLLIFLTTMNTAGLLPYTFTPTSQLSINMGFAGALWMGIVILGMRTQPTHSLGHLLPEGAPALLTPVLVIIETISLFIRPIALGVRLTANLTAGHLLIQLTSTATLALLTIMPITAIFTGVLLFLLALLEAAVALIQAYVFILLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8100..8783
location: region:8100-8783:1
so has part: feature:8100-8783:1:exon

YP_009037667.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8100-8783:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: COX3
so part of: sequence
location: 8783..9567
location: region:8783-9567:1
so has part: feature:8783-9567:1:exon
subclass of: SO_0000010

19590709
type: Gene
SIO_000068: ncbigene

position:9567:1
position: 9567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8783-9567:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9566..9567,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAVAALLMTSGLAIWMHFHTTTLMSLGLVLLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGITTLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGQRKQAIQSLTLTILLGFYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAICLLRQAQYHFTSDHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8783..9567
location: region:8783-9567:1
so has part: feature:8783-9567:1:exon

YP_009037668.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8783-9567:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Gly
so part of: sequence
location: 9568..9639
location: region:9568-9639:1
so has part: feature:9568-9639:1:region

position:9568:1
position: 9568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9639:1
position: 9639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9568-9639:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: ND3
so part of: sequence
location: 9640..9988
location: region:9640-9988:1
so has part: feature:9640-9988:1:exon
subclass of: SO_0000010

19590708
type: Gene
SIO_000068: ncbigene

position:9640:1
position: 9640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9988:1
position: 9988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9640-9988:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9988,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLVVMTFIIASTLSLILAIVAFWLPLMTPDHEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWGDQLINPHLTFFWATILLILLTLGLIYEWIQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9640..9988
location: region:9640-9988:1
so has part: feature:9640-9988:1:exon

YP_009037669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9640-9988:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Arg
so part of: sequence
location: 9989..10057
location: region:9989-10057:1
so has part: feature:9989-10057:1:region

position:9989:1
position: 9989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10057:1
position: 10057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9989-10057:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: ND4L
so part of: sequence
location: 10058..10354
location: region:10058-10354:1
so has part: feature:10058-10354:1:exon
subclass of: SO_0000010

19590707
type: Gene
SIO_000068: ncbigene

position:10058:1
position: 10058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10354:1
position: 10354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10058-10354:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPAHFAFSSAFMLGLAGLAFHRTHFISALLCLEGLMLSLFIALSLWTLQFDSMNSASMPMILLAFSACEAGTGLALLVATTRTHSTNRLKNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10058..10354
location: region:10058-10354:1
so has part: feature:10058-10354:1:exon

YP_009037670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10058-10354:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: ND4
so part of: sequence
location: 10348..11728
location: region:10348-11728:1
so has part: feature:10348-11728:1:exon
subclass of: SO_0000010

19590706
type: Gene
SIO_000068: ncbigene

position:10348:1
position: 10348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11728:1
position: 11728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10348-11728:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11728,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILLPSILLLPSTWLISPKYLWTTTLSYSLLIASASLMWLAAPAETGWSFLNCLMASDPISTPLLVLTCWLLPLMILASQNHLMLEPTNRQRTFISLLISLQIFLILAFSATELIMFYIMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLIALLLLQNSTGTLSFFTIPYLPLTCSDPWAHKIWWTACLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRILIILDPISKELSYPFIILALWGVIMTGSICLRQTDLKALIAYSSVSHMGLVAAAILIQTPWAFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQTLLPLTAVWWFIATLANLALPPLPNLMGELMIITSLFKWSMWTLILTGLGTLITAGYSLYMFLTTQHGPIPNHLISINPPHSREHLLLTLHLLPLLLLILKPELLWGWSA
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10348..11728
location: region:10348-11728:1
so has part: feature:10348-11728:1:exon

YP_009037671.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10348-11728:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-His
so part of: sequence
location: 11729..11798
location: region:11729-11798:1
so has part: feature:11729-11798:1:region

position:11729:1
position: 11729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11798:1
position: 11798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11729-11798:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Ser
so part of: sequence
location: 11799..11868
location: region:11799-11868:1
so has part: feature:11799-11868:1:region

position:11799:1
position: 11799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11868:1
position: 11868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11799-11868:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Leu
so part of: sequence
location: 11879..11951
location: region:11879-11951:1
so has part: feature:11879-11951:1:region

position:11879:1
position: 11879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11951:1
position: 11951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11879-11951:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: ND5
so part of: sequence
location: 11952..13790
location: region:11952-13790:1
so has part: feature:11952-13790:1:exon
subclass of: SO_0000010

19590705
type: Gene
SIO_000068: ncbigene

position:11952:1
position: 11952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13790:1
position: 13790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11952-13790:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHSTALFLPSCMMIIFLILLYPVLTTFNPNPLSHDWALTKTKTAIKLAFFISLLPLFLLFDQGAETITTTWSWMNTLTFDININFKFDSYSCIFTPVALYVTWSILEFASWYMHSDPQMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAVLYNRIGDIGLILMMAWTATHLNSWDLQQMFILSNNHNLTLPLLGLILAATGKSAQFSLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLNPMLENNKIALTTCLCLGALTTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHHLAPLTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSYLNAWALTLTLIATSFTAAYSLRIIFFVSMNHPRFNPLPPINENNPAVINPIKRLAWGSIIAGFLITMNFLPINTPPMTMPTSLKLSALIVTIMGLFTAMELASLSSKQFKQVPNLNLHHFSNMLGFFPHIMHRFTPQTNLTLGQMIATQTIDQTWLEKSGPKAIYSLNIRPITTTSNIQQGMIKTYLSLFFLTTLITIALLMF
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11952..13790
location: region:11952-13790:1
so has part: feature:11952-13790:1:exon

YP_009037672.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11952-13790:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: ND6
so part of: sequence
location: complement(13787..14308)
location: region:13787-14308:-1
so has part: feature:13787-14308:-1:exon
subclass of: SO_0000010

19590704
type: Gene
SIO_000068: ncbigene

position:13787:-1
position: 13787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14308:-1
position: 14308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13787-14308:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MSYMMYVLLFGLVLGLVAVASNPSPYFAALGLVVVSGVGCGVLVSSGGCFLSLILFLIYLGGMLVVFAYSAAMAAEPYPEGWGSWPALRLMVGYVLGVGVAWVFLGEGWYEEDWGGFDGLVGVSVLRGDMVGVSVMYSSGGWLLVVGGWVLLLTLFVVLELTRGLARGALRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13787..14308)
location: region:13787-14308:-1
so has part: feature:13787-14308:-1:exon

YP_009037673.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13787-14308:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Glu
so part of: sequence
location: complement(14309..14377)
location: region:14309-14377:-1
so has part: feature:14309-14377:-1:region

position:14309:-1
position: 14309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14377:-1
position: 14377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14309-14377:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 8081
gene: CYTB
so part of: sequence
location: 14382..15521
location: region:14382-15521:1
so has part: feature:14382-15521:1:exon
subclass of: SO_0000010

19590703
type: Gene
SIO_000068: ncbigene

position:14382:1
position: 14382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15521:1
position: 15521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14382-15521:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8081
gene: CYTB
codon start: 1
transl table: 2
product: cytochrome b
translation: MANLRKSHPLLKIANDALVDLPTPLNISAWWNFGSLLGLCLVAQILTGLFLAMHYTSDISLAFSSVAHICRDVNYGWLIRNMHANGASLFFICLYLHIGRGLYYGSYLFKETWNIGVILFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFAFHFLLPFIVAAATLVHLIFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFILMLTALITLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMVVPLLHTSKQRSLTFRPITQMLFWLLVADVIILTWIGGMPVEHPFIIIGQIASMLYFSLFLFLIPTAALIENKMLKW
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14382..15521
location: region:14382-15521:1
so has part: feature:14382-15521:1:exon

YP_009037674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14382-15521:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Thr
so part of: sequence
location: 15522..15594
location: region:15522-15594:1
so has part: feature:15522-15594:1:region

position:15522:1
position: 15522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15594:1
position: 15594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15522-15594:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8081
product: tRNA-Pro
so part of: sequence
location: complement(15594..15663)
location: region:15594-15663:-1
so has part: feature:15594-15663:-1:region

position:15594:-1
position: 15594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15663:-1
position: 15663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15594-15663:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 8081
note: control region
so part of: sequence
location: 15664..16538
location: region:15664-16538:1
so has part: feature:15664-16538:1:region

position:15664:1
position: 15664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15664-16538:1:region