Lacerta agilis mitochondrion, complete genome.
type: Entry
definition: Lacerta agilis mitochondrion, complete genome.
sequence version: NC_021766.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_021766.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Lacerta agilis
organism: Lacerta agilis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Lacerta.
reference: 1
reference: 2
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to KC990830.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 17090
topology: circular
so has quality: SO_0000988
location: 1..17090
location: region:1-17090:1
RO_0002162: 80427

NC_021766
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Direct Submission
journal: Submitted (18-JUL-2013) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

2
title: Direct Submission
author: Qin, X.
author: Tao, C.
journal: Submitted (27-APR-2013) College of Life Science, Guangxi Normal University, No. 15 Yucai Road, Guilin, Guangxi 541004, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17090:1
position: 17090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17090:1:source
so part of: sequence
organism: Lacerta agilis
organelle: mitochondrion
mol type: genomic DNA

80427
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Phe
anticodon: (pos:35..37,aa:Phe,seq:gaa)
so part of: sequence
location: 1..74
location: region:1-74:1
so has part: feature:1-74:1:region

position:74:1
position: 74
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-74:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 80427
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 75..1020
location: region:75-1020:1
so has part: feature:75-1020:1:region

position:75:1
position: 75
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1020:1
position: 1020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75-1020:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Val
anticodon: (pos:1050..1052,aa:Val,seq:tac)
so part of: sequence
location: 1021..1086
location: region:1021-1086:1
so has part: feature:1021-1086:1:region

position:1021:1
position: 1021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1086:1
position: 1086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1021-1086:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 80427
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1087..2606
location: region:1087-2606:1
so has part: feature:1087-2606:1:region

position:1087:1
position: 1087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2606:1
position: 2606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1087-2606:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Leu
anticodon: (pos:2641..2643,aa:Leu,seq:taa)
codon recognized: UUR
so part of: sequence
location: 2607..2679
location: region:2607-2679:1
so has part: feature:2607-2679:1:region

position:2607:1
position: 2607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2679:1
position: 2679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2607-2679:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: ND1
so part of: sequence
location: 2680..3648
location: region:2680-3648:1
so has part: feature:2680-3648:1:exon
subclass of: SO_0000010

16217041
type: Gene
SIO_000068: ncbigene

position:2680:1
position: 2680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3648:1
position: 3648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2680-3648:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MHKLLPHIINPILYIIPILIAVAFLTLLERKILSYMQLRKGPNVVGPLGLLQPVADGVKLFIKEPLRPTHASPILFIMAPTLALLLALMMWAPLPMPHSLADMNLGLLFLLALSSMMVYTILWSGWASNSKYALIGALRAIAQTISYEVTLGIILLSVIMFSGTFTMHTLLTTQEHTWLIFPLWPLAMMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYMNILMMNTLTCILFFSPTATMQMELFTMNLMIKTTLLTMIFLWTRASYPRFRYDQLMHLLWKQFLPATLALYLWYISLPIALSGLPPLN
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2680..3648
location: region:2680-3648:1
so has part: feature:2680-3648:1:exon

YP_008239327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2680-3648:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Ile
anticodon: (pos:3689..3691,aa:Ile,seq:gat)
so part of: sequence
location: 3657..3727
location: region:3657-3727:1
so has part: feature:3657-3727:1:region

position:3657:1
position: 3657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3727:1
position: 3727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3657-3727:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Gln
anticodon: (pos:complement(3764..3766),aa:Gln,seq:ttg)
so part of: sequence
location: complement(3728..3798)
location: region:3728-3798:-1
so has part: feature:3728-3798:-1:region

position:3728:-1
position: 3728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3798:-1
position: 3798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3728-3798:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Met
anticodon: (pos:3828..3830,aa:Met,seq:cat)
so part of: sequence
location: 3798..3865
location: region:3798-3865:1
so has part: feature:3798-3865:1:region

position:3798:1
position: 3798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3865:1
position: 3865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3798-3865:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: ND2
so part of: sequence
location: 3866..4898
location: region:3866-4898:1
so has part: feature:3866-4898:1:exon
subclass of: SO_0000010

16217033
type: Gene
SIO_000068: ncbigene

position:3866:1
position: 3866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4898:1
position: 4898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3866-4898:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:4898,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPIISSMFISNLALGTIIVAASYHWFLAWVGLELNTLAIIPMLAKQHHPRATEAATKYFIIQATASSIILLSSVINAWHTGTWDITQLTSHPTPTLLTIALAMKLGLAPMHFWLPEVMQGINTSTALIMTTWQKLPPMTLLYLTTHQLPTMVVLLLAVLSVLIGGWSAKSQTQMRKIMAYSSIAHLGWMLTALSLSQNLLLFTLFIYILMTSSMFLVLISSMSKTSKDLGQLWSTSPAITSISMITLISLGGLPPLIGFLPKWLILSELTNNHLTSMAVILALSSLLSLMFYMRLTYTTTLTISPNTTNSMMKWRFKLTKPLNMVPMITSLLTLSPLLPLISP
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 3866..4898
location: region:3866-4898:1
so has part: feature:3866-4898:1:exon

YP_008239328.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3866-4898:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Trp
anticodon: (pos:4933..4935,aa:Trp,seq:tca)
so part of: sequence
location: 4899..4971
location: region:4899-4971:1
so has part: feature:4899-4971:1:region

position:4899:1
position: 4899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4971:1
position: 4971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4899-4971:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Ala
anticodon: (pos:complement(5009..5011),aa:Ala,seq:tgc)
so part of: sequence
location: complement(4973..5041)
location: region:4973-5041:-1
so has part: feature:4973-5041:-1:region

position:4973:-1
position: 4973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5041:-1
position: 5041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4973-5041:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Asn
anticodon: (pos:complement(5080..5082),aa:Asn,seq:gtt)
so part of: sequence
location: complement(5043..5115)
location: region:5043-5115:-1
so has part: feature:5043-5115:-1:region

position:5043:-1
position: 5043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5115:-1
position: 5115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5043-5115:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 80427
note: putative light-strand replication origin
so part of: sequence
location: 5116..5141
location: region:5116-5141:1
so has part: feature:5116-5141:1:region

position:5116:1
position: 5116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5141:1
position: 5141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5116-5141:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Cys
anticodon: (pos:complement(5178..5180),aa:Cys,seq:gca)
so part of: sequence
location: complement(5142..5205)
location: region:5142-5205:-1
so has part: feature:5142-5205:-1:region

position:5142:-1
position: 5142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5205:-1
position: 5205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5142-5205:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Tyr
anticodon: (pos:complement(5245..5247),aa:Tyr,seq:gta)
so part of: sequence
location: complement(5209..5276)
location: region:5209-5276:-1
so has part: feature:5209-5276:-1:region

position:5209:-1
position: 5209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5276:-1
position: 5276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5209-5276:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: COX1
so part of: sequence
location: 5278..6822
location: region:5278-6822:1
so has part: feature:5278-6822:1:exon
subclass of: SO_0000010

16217034
type: Gene
SIO_000068: ncbigene

position:5278:1
position: 5278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6822:1
position: 6822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5278-6822:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MSLIRWFFSTNHKDIGTLYLLFGAWAGMVGTALSLIIRTELSQPGTLLGDDQVYNVVVTAHAFVMIFFLVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLSSSAIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTCINMKPPNMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTSFFDPAGGGDPILYQPLFWFFVQPEVYIWIYPGWAMVSHIVTYYAGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGTIKWDAAMLWALGFIFLFTVGGLTGIILANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFTGYTLHSSWTKAQFGVMFTGVNMTFFPQHFLGLAGMPRRYSDYPDAYTLWNSVSSIGSLISLTAVIMMMFIIWEALAAKREVLTLELTNTNLEWLHGCPPPYHTYEEATYVQTS
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5278..6822
location: region:5278-6822:1
so has part: feature:5278-6822:1:exon

YP_008239329.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5278-6822:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Ser
anticodon: (pos:complement(6854..6856),aa:Ser,seq:tga)
codon recognized: UCN
so part of: sequence
location: complement(6818..6889)
location: region:6818-6889:-1
so has part: feature:6818-6889:-1:region

position:6818:-1
position: 6818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6889:-1
position: 6889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6818-6889:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Asp
anticodon: (pos:6923..6925,aa:Asp,seq:gtc)
so part of: sequence
location: 6893..6960
location: region:6893-6960:1
so has part: feature:6893-6960:1:region

position:6893:1
position: 6893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6960:1
position: 6960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6893-6960:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: COX2
so part of: sequence
location: 6961..7648
location: region:6961-7648:1
so has part: feature:6961-7648:1:exon
subclass of: SO_0000010

16217042
type: Gene
SIO_000068: ncbigene

position:6961:1
position: 6961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7648:1
position: 7648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6961-7648:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7648,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPAQLGFQNAASPIMEELLHFHDHALMIVFLISALVLYIISLMLSTKLTHTNTMDAQEVEMIWTILPAIILIMIALPSLQILYLMDEVNNPHLTIKAIGHQWYWSYEYTDYENLLFDSYMIPTCDLLPGNFRLLEVDHRVVIPTESPIRILISAEDVLHSWAIPTLGIKTDAVPGRLNQTTLITSHPGLFYGQCSEISGSNHSFMRIVVESTPLKYFEDWSKLMVSS
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 6961..7648
location: region:6961-7648:1
so has part: feature:6961-7648:1:exon

YP_008239330.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6961-7648:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Lys
anticodon: (pos:7678..7680,aa:Lys,seq:ttt)
so part of: sequence
location: 7649..7713
location: region:7649-7713:1
so has part: feature:7649-7713:1:region

position:7649:1
position: 7649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7713:1
position: 7713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7649-7713:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: ATP8
so part of: sequence
location: 7715..7876
location: region:7715-7876:1
so has part: feature:7715-7876:1:exon
subclass of: SO_0000010

16217043
type: Gene
SIO_000068: ncbigene

position:7715:1
position: 7715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7876:1
position: 7876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7715-7876:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPTPWFMVFILIWVFLIMFFTKTLNNNPPLSTSQYYKQPSNHHWIWPWL
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7715..7876
location: region:7715-7876:1
so has part: feature:7715-7876:1:exon

YP_008239331.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7715-7876:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: ATP6
so part of: sequence
location: 7867..8546
location: region:7867-8546:1
so has part: feature:7867-8546:1:exon
subclass of: SO_0000010

16217036
type: Gene
SIO_000068: ncbigene

position:7867:1
position: 7867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8546:1
position: 8546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7867-8546:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: ATP6
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:8545..8546,aa:TERM)
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLSFFDQFSIPNILGIPLMIPALLFPLIIWFTTNRLIQNRYSTIQSSFTFYITKQMMLPINTTGHKWASTFVTLMLMLMLFNTLGLLPYTFTPTTQLSMNMALAVPTWLMTIFIGLRNQPTASLGHLLPEGTPTLLIPMLILIETVSLLIRPIALGVRLTANLTAGHLLIQLTSTAVFALLNTMTITASTTLIVLILLTCLEMAVALIQAYVFVLLLTLYLQENI
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 7867..8546
location: region:7867-8546:1
so has part: feature:7867-8546:1:exon

YP_008239332.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7867-8546:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: COX3
so part of: sequence
location: 8547..9330
location: region:8547-9330:1
so has part: feature:8547-9330:1:exon
subclass of: SO_0000010

16217037
type: Gene
SIO_000068: ncbigene

position:8547:1
position: 8547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9330:1
position: 9330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8547-9330:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9330,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MTHQAHPFHMVDPSPWPLTGAIAALLMTSGLAAWFHFNNTNLMYLGLVVLLLTMQQWWRDIIREGTYQGQHTAPVQKGLRYGMILFITSEVLFFAGFFWAFYHSSLAPTPELGNQWPPTGIEPLNAFEVPLLNTAVLLASGVTVTWAHHALMEGKRKDMIQALTLTILLGLYFTILQAAEYYEAPFTISDSVYGATFFVATGFHGLHVIIGSTFLLVCLIRQLSHHFTTSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8547..9330
location: region:8547-9330:1
so has part: feature:8547-9330:1:exon

YP_008239333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8547-9330:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Gly
anticodon: (pos:9361..9363,aa:Gly,seq:tcc)
so part of: sequence
location: 9331..9399
location: region:9331-9399:1
so has part: feature:9331-9399:1:region

position:9331:1
position: 9331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9399:1
position: 9399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9331-9399:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: ND3
so part of: sequence
location: 9400..9745
location: region:9400-9745:1
so has part: feature:9400-9745:1:exon
subclass of: SO_0000010

16217035
type: Gene
SIO_000068: ncbigene

position:9400:1
position: 9400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9745:1
position: 9745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9400-9745:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9745,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLMTMFIITTLISTILILISFWLPQMLPDMEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWATNLPYPMVTVSWVYTIITLLTLGLIYEWTQGGLDWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9400..9745
location: region:9400-9745:1
so has part: feature:9400-9745:1:exon

YP_008239334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9400-9745:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Arg
anticodon: (pos:9776..9778,aa:Arg,seq:tcg)
so part of: sequence
location: 9746..9811
location: region:9746-9811:1
so has part: feature:9746-9811:1:region

position:9746:1
position: 9746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9811:1
position: 9811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9746-9811:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: ND4L
so part of: sequence
location: 9813..10109
location: region:9813-10109:1
so has part: feature:9813-10109:1:exon
subclass of: SO_0000010

16217038
type: Gene
SIO_000068: ncbigene

position:9813:1
position: 9813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10109:1
position: 10109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9813-10109:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MSTILFLLNTSFLLGLLGLSFHRTHLMSILICIEAMMLTPYLMMTTLMSSTNTPTTAMLPILLLALSACEASTGLALLVATTRTHGTDHMKTLNLLKC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9813..10109
location: region:9813-10109:1
so has part: feature:9813-10109:1:exon

YP_008239335.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9813-10109:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: ND4
so part of: sequence
location: 10103..11483
location: region:10103-11483:1
so has part: feature:10103-11483:1:exon
subclass of: SO_0000010

16217039
type: Gene
SIO_000068: ncbigene

position:10103:1
position: 10103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11483:1
position: 11483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10103-11483:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11483,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKIIIPTALLVPSALLLSPNILFSTMVGYSMLLSLLSLLLFNHPMLLKISNATTYFTTDTTSTPLIVLSCWLLPLMILASQNHLKTEPQYRKRMFLMTLSTLQTILILTFSASEFILFYILFEATLIPTLIIITRWGNQAERLNAGLYFLFYTLTSSLPLLITMLYLNNKYAHTSMELFYLNQPELPSTSPNPMFWLASLLAFMVKLPLYGLHLWLPKAHVEAPIAGSMGTAAVLLKLGGYGLIRVSPLLYPHPQTLVLPIMVMALWGILMTSSICLRQTDLKALIAYSSVSHMGLVAAAILTQTPWGLTGAMILMIAHGLTSSALFTLANTNYERAHTRTLLIVRGLQLIFPLMSSWWLLVNLTNMALPPSINLIGELYIIITLFNWSPPSILLTGVGTLITASYSLYMFLMTQRGSTSTQFQLLSPTHTREHLTLILHLLPLGLLILKPALISGLFI
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10103..11483
location: region:10103-11483:1
so has part: feature:10103-11483:1:exon

YP_008239336.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10103-11483:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-His
anticodon: (pos:11514..11516,aa:His,seq:gtg)
so part of: sequence
location: 11484..11552
location: region:11484-11552:1
so has part: feature:11484-11552:1:region

position:11484:1
position: 11484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11552:1
position: 11552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11484-11552:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Ser
anticodon: (pos:11578..11580,aa:Ser,seq:gct)
codon recognized: AGY
so part of: sequence
location: 11554..11617
location: region:11554-11617:1
so has part: feature:11554-11617:1:region

position:11554:1
position: 11554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11617:1
position: 11617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11554-11617:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Leu
anticodon: (pos:11650..11652,aa:Leu,seq:tag)
codon recognized: CUN
so part of: sequence
location: 11618..11688
location: region:11618-11688:1
so has part: feature:11618-11688:1:region

position:11618:1
position: 11618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11688:1
position: 11688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11618-11688:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: ND5
so part of: sequence
location: 11692..13515
location: region:11692-13515:1
so has part: feature:11692-13515:1:exon
subclass of: SO_0000010

16217044
type: Gene
SIO_000068: ncbigene

position:11692:1
position: 11692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13515:1
position: 13515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11692-13515:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHNLLMHSSMLTVLFILIHPLLMTLNPIPLMMGWSMLYAKTAVQLAFKVSLIPLAVFMLTGMEASTTNVTWASLAGMEINISFIFDMYSLTFVPISLFVTWSILEFANWYMSSDPNMSRFFKYLLIFLLAMLILVTANNMFQLFVGWEGVGIMSFMLIGWWFARPDANTAALQAIIFNRVGDIGFMLSLAWLATHLATWNIQEMTIQMKNPPLLPLLGLVLASAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRLHPMLENNETALSICLCLGALTTLFTALCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGAIIHNLNDEQDIRKMGGMQKMLPTTATCLTIGSLALTGTPFLSGFYSKDTIIETMNSSYLNAWALAVTLFATMLTATYTMRMVFYVQLNTPRTTTSIMNELPPTLTNPLIRLAIGSLLTGLILVTTLLPTKPAPTTMPTTMKLCAMIITILGALFALQIAKKTTWLMTTKRLKHQEFSNQLGFFNPTLHRLFPLTSLFSGQTMALHINDLLWLEKTGPKGLISLSLPSIKATTAAQKGLMKFYLSIFIITSVCFITILWT
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11692..13515
location: region:11692-13515:1
so has part: feature:11692-13515:1:exon

YP_008239337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11692-13515:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: ND6
so part of: sequence
location: complement(13511..14026)
location: region:13511-14026:-1
so has part: feature:13511-14026:-1:exon
subclass of: SO_0000010

16217045
type: Gene
SIO_000068: ncbigene

position:13511:-1
position: 13511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14026:-1
position: 14026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13511-14026:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MMYFIEFFLVCFVISLVGVACNPSPYFGAGSLVVAAGLGCGVLILLGGSFVSLVLLLIYLGGMLVVFAYSVALASDPFPESWGNLGGYLISYVFLMVFLVFMFGEGEFISLGVNGMDSWGLSVVRVDLSGVSLLYYLGGGGLLICGWALLLTLFVVLELTRGLVRGSLRVV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13511..14026)
location: region:13511-14026:-1
so has part: feature:13511-14026:-1:exon

YP_008239338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13511-14026:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Glu
anticodon: (pos:complement(14063..14065),aa:Glu,seq:ttc)
so part of: sequence
location: complement(14027..14094)
location: region:14027-14094:-1
so has part: feature:14027-14094:-1:region

position:14027:-1
position: 14027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14094:-1
position: 14094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14027-14094:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 80427
gene: CYTB
so part of: sequence
location: 14101..15243
location: region:14101-15243:1
so has part: feature:14101-15243:1:exon
subclass of: SO_0000010

16217040
type: Gene
SIO_000068: ncbigene

position:14101:1
position: 14101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15243:1
position: 15243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14101-15243:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 80427
gene: CYTB
codon start: 1
transl table: 2
product: cytochrome b
translation: MTLNLRKQHPIFKIINASFIDLPTPSNISAWWNFGSLLGLCLIIQTITGLFLAMHYTADISSAFSSVAHIHRDVQHGWLIRNLHANGASMFFTCIYLHIGRGLYYGSYIYTETWNIGILLLLMVMATAFMGYVLPWGQMSFWGATVITNLLSAMPYVGTTLVEWIWGGFAIDNATLTRFFTIHFLLPFIIMGTSMVHLLFLHETGSNNPTGLNSNTDKIPFHPYYSYKDLFGALLMLMCLLSLALFLPNLLGDPENFSPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILFTSPMLHLSKQRTLTYRPLSQMLFWLLISDVIILTWIGGQPVEHPFIIIGQLASILYFMIFLLFMPALALLENKLLKW
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14101..15243
location: region:14101-15243:1
so has part: feature:14101-15243:1:exon

YP_008239339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14101-15243:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Thr
anticodon: (pos:15281..15283,aa:Thr,seq:tgt)
so part of: sequence
location: 15247..15314
location: region:15247-15314:1
so has part: feature:15247-15314:1:region

position:15247:1
position: 15247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15314:1
position: 15314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15247-15314:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 80427
product: tRNA-Pro
so part of: sequence
location: complement(15334..15402)
location: region:15334-15402:-1
so has part: feature:15334-15402:-1:region

position:15334:-1
position: 15334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15402:-1
position: 15402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15334-15402:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 80427
note: control region
so part of: sequence
location: 15403..17090
location: region:15403-17090:1
so has part: feature:15403-17090:1:region

position:15403:1
position: 15403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15403-17090:1:region