Salmo trutta mitochondrion, complete genome.
type: Entry
definition: Salmo trutta mitochondrion, complete genome.
sequence version: NC_024032.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_024032.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Salmo trutta (river trout)
organism: Salmo trutta
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to JQ390057.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16677
topology: circular
so has quality: SO_0000988
location: 1..16677
location: region:1-16677:1
RO_0002162: 8032

NC_024032
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Evolution of Salmoniformes based on their mitochondrial genomes
author: Lubieniecki, K.P.
author: Saeed, D.
author: So, M.
author: Fujiki, K.
author: Koop, B.F.
author: Davidson, W.S.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (28-APR-2014) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Lubieniecki, K.P.
author: Saeed, D.
author: So, M.
author: Fujiki, K.
author: Koop, B.F.
author: Davidson, W.S.
journal: Submitted (09-JAN-2012) Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16677:1
position: 16677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16677:1:source
so part of: sequence
organism: Salmo trutta
organelle: mitochondrion
mol type: genomic DNA

8032
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Phe
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:region

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8032
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 69..1015
location: region:69-1015:1
so has part: feature:69-1015:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1015:1
position: 1015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1015:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Val
so part of: sequence
location: 1016..1087
location: region:1016-1087:1
so has part: feature:1016-1087:1:region

position:1016:1
position: 1016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1087:1
position: 1087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1016-1087:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8032
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1088..2768
location: region:1088-2768:1
so has part: feature:1088-2768:1:region

position:1088:1
position: 1088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2768:1
position: 2768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1088-2768:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2769..2843
location: region:2769-2843:1
so has part: feature:2769-2843:1:region

position:2769:1
position: 2769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2843:1
position: 2843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2769-2843:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTND1
gene: ND1
gene synonym: MTND1
so part of: sequence
location: 2844..3818
location: region:2844-3818:1
so has part: feature:2844-3818:1:exon
subclass of: SO_0000010

19099188
type: Gene
SIO_000068: ncbigene

position:2844:1
position: 2844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3818:1
position: 3818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2844-3818:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTND1
gene: ND1
gene synonym: MTND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MITTLITHVVNPLAYIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPIPYPITDLNLGVLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNVAQESIWLLVPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSTILFLGASHIPAFPELTAVNLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKSFLPLTLALVLWHLALPTATAGLPPQL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2844..3818
location: region:2844-3818:1
so has part: feature:2844-3818:1:exon

YP_009026989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2844-3818:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Ile
so part of: sequence
location: 3826..3897
location: region:3826-3897:1
so has part: feature:3826-3897:1:region

position:3826:1
position: 3826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3897:1
position: 3897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3826-3897:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Gln
so part of: sequence
location: complement(3895..3965)
location: region:3895-3965:-1
so has part: feature:3895-3965:-1:region

position:3895:-1
position: 3895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3965:-1
position: 3965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3895-3965:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Met
so part of: sequence
location: 3965..4033
location: region:3965-4033:1
so has part: feature:3965-4033:1:region

position:3965:1
position: 3965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4033:1
position: 4033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3965-4033:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTND2
gene: ND2
gene synonym: MTND2
so part of: sequence
location: 4034..5083
location: region:4034-5083:1
so has part: feature:4034-5083:1:exon
subclass of: SO_0000010

19099176
type: Gene
SIO_000068: ncbigene

position:4034:1
position: 4034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5083:1
position: 5083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4034-5083:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTND2
gene: ND2
gene synonym: MTND2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYVLTILLSSLGLGTVLTFASSHWLLAWMGLEINTLAIIPIMAQQHHPRAIEATTKYFLTQATAAAMILFASTTNAWLVGEWEIHQLSHPLATTTAMLALALKLGLAPVHFWLPEVLQGLELTTGLILSTWQKLAPFALMIQVAPTINSSLLIAMGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMVLILQYAPSLTLLSLFLYIIMTSSAFLTLKTNNSLTINTLATSWTKSPTLAALTALVLLSLGGLPPLSGFMPKWLILQELTKQELPLSATLAAMTALLSLYFYLRLCYAMTLTIYPNTLAATTPWRLNFTFITLPLSIVTILALGLLPLTPAVTAMLTL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4034..5083
location: region:4034-5083:1
so has part: feature:4034-5083:1:exon

YP_009026990.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4034-5083:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Trp
so part of: sequence
location: 5085..5156
location: region:5085-5156:1
so has part: feature:5085-5156:1:region

position:5085:1
position: 5085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5156:1
position: 5156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5085-5156:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Ala
so part of: sequence
location: complement(5159..5227)
location: region:5159-5227:-1
so has part: feature:5159-5227:-1:region

position:5159:-1
position: 5159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5227:-1
position: 5227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5159-5227:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Asn
so part of: sequence
location: complement(5229..5301)
location: region:5229-5301:-1
so has part: feature:5229-5301:-1:region

position:5229:-1
position: 5229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5301:-1
position: 5301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5229-5301:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Cys
so part of: sequence
location: complement(5336..5402)
location: region:5336-5402:-1
so has part: feature:5336-5402:-1:region

position:5336:-1
position: 5336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5402:-1
position: 5402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5336-5402:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Tyr
so part of: sequence
location: complement(5403..5473)
location: region:5403-5473:-1
so has part: feature:5403-5473:-1:region

position:5403:-1
position: 5403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5473:-1
position: 5473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5403-5473:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTCO1
gene: COX1
gene synonym: MTCO1
so part of: sequence
location: 5475..7025
location: region:5475-7025:1
so has part: feature:5475-7025:1:exon
subclass of: SO_0000010

19099177
type: Gene
SIO_000068: ncbigene

position:5475:1
position: 5475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7025:1
position: 7025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5475-7025:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTCO1
gene: COX1
gene synonym: MTCO1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGAFVHWFPLFTGYTLHSTWTKIHFGIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLVSLVAVIMFLFILWEAFAAKREVASIELTSTNVEWLHGCPPPYHTFEEPAFVQVQAS
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5475..7025
location: region:5475-7025:1
so has part: feature:5475-7025:1:exon

YP_009026991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5475-7025:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7026..7096)
location: region:7026-7096:-1
so has part: feature:7026-7096:-1:region

position:7026:-1
position: 7026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7096:-1
position: 7096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7026-7096:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Asp
so part of: sequence
location: 7101..7174
location: region:7101-7174:1
so has part: feature:7101-7174:1:region

position:7101:1
position: 7101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7174:1
position: 7174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7101-7174:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTCO2
gene: COX2
gene synonym: MTCO2
so part of: sequence
location: 7189..7879
location: region:7189-7879:1
so has part: feature:7189-7879:1:exon
subclass of: SO_0000010

19099178
type: Gene
SIO_000068: ncbigene

position:7189:1
position: 7189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7879:1
position: 7879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7189-7879:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTCO2
gene: COX2
gene synonym: MTCO2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7879,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHALMIVLLISTLVLYIIVAMVSTKLTNKYILDSQEIEIIWTVLPAIILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMVPTQDLVPGQFRLLETDHRMVVPVESPIRVLVSAEDVLHSWAVPSLGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFEKWSTMMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7189..7879
location: region:7189-7879:1
so has part: feature:7189-7879:1:exon

YP_009026992.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7189-7879:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Lys
so part of: sequence
location: 7880..7953
location: region:7880-7953:1
so has part: feature:7880-7953:1:region

position:7880:1
position: 7880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7953:1
position: 7953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7880-7953:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTATP8
gene: ATP8
gene synonym: MTATP8
so part of: sequence
location: 7955..8122
location: region:7955-8122:1
so has part: feature:7955-8122:1:exon
subclass of: SO_0000010

19099179
type: Gene
SIO_000068: ncbigene

position:7955:1
position: 7955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8122:1
position: 8122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7955-8122:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTATP8
gene: ATP8
gene synonym: MTATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFAILVFSWLVFLTVIPPKVLGHTFTNEPTSQSTEKAKPEPWNWPWH
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7955..8122
location: region:7955-8122:1
so has part: feature:7955-8122:1:exon

YP_009026993.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7955-8122:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTATP6
gene: ATP6
gene synonym: MTATP6
so part of: sequence
location: 8113..8796
location: region:8113-8796:1
so has part: feature:8113-8796:1:exon
subclass of: SO_0000010

19099180
type: Gene
SIO_000068: ncbigene

position:8113:1
position: 8113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8796:1
position: 8796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8113-8796:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTATP6
gene: ATP6
gene synonym: MTATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLSFFDQFMSPTYLGIPLIAVALTLPWILFPTPSTRWLNNRLITLQGWFINRFTQQLLLPLNLGGHKWAVLLTSLMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPMMPTVAILTSIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8113..8796
location: region:8113-8796:1
so has part: feature:8113-8796:1:exon

YP_009026994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8113-8796:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTCO3
gene: COX3
gene synonym: MTCO3
so part of: sequence
location: 8796..9580
location: region:8796-9580:1
so has part: feature:8796-9580:1:exon
subclass of: SO_0000010

19099181
type: Gene
SIO_000068: ncbigene

position:9580:1
position: 9580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8796-9580:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTCO3
gene: COX3
gene synonym: MTCO3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9579..9580,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAIAALLLTSGTAVWFHFHSLTLLTMGNILLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPSPELGGCWPPTGIITLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQTIQALTLTILLGFYFTFLQGMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8796..9580
location: region:8796-9580:1
so has part: feature:8796-9580:1:exon

YP_009026995.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8796-9580:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Gly
so part of: sequence
location: 9581..9650
location: region:9581-9650:1
so has part: feature:9581-9650:1:region

position:9581:1
position: 9581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9650:1
position: 9650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9581-9650:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTND3
gene: ND3
gene synonym: MTND3
so part of: sequence
location: 9651..9999
location: region:9651-9999:1
so has part: feature:9651-9999:1:exon
subclass of: SO_0000010

19099182
type: Gene
SIO_000068: ncbigene

position:9651:1
position: 9651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9999:1
position: 9999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9651-9999:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTND3
gene: ND3
gene synonym: MTND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9999,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLITTIIAITITLSAVLATVSFWLPQITPDAEKLSPYECGFDPLGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWGDQLATPALTLAWSAAVLALLTLGLIYEWTQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9651..9999
location: region:9651-9999:1
so has part: feature:9651-9999:1:exon

YP_009026996.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9651-9999:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Arg
so part of: sequence
location: 10000..10069
location: region:10000-10069:1
so has part: feature:10000-10069:1:region

position:10000:1
position: 10000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10069:1
position: 10069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10000-10069:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTND4L
gene: ND4L
gene synonym: MTND4L
so part of: sequence
location: 10070..10366
location: region:10070-10366:1
so has part: feature:10070-10366:1:exon
subclass of: SO_0000010

19099183
type: Gene
SIO_000068: ncbigene

position:10070:1
position: 10070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10366:1
position: 10366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10070-10366:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTND4L
gene: ND4L
gene synonym: MTND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFSFTSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQMEATGYSVAPMLLLAFSACEASAGLALLVATARTHGTDRLQSLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10070..10366
location: region:10070-10366:1
so has part: feature:10070-10366:1:exon

YP_009026997.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10070-10366:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTND4L
gene: ND4
gene synonym: MTND4L
so part of: sequence
location: 10360..11740
location: region:10360-11740:1
so has part: feature:10360-11740:1:exon
subclass of: SO_0000010

19099184
type: Gene
SIO_000068: ncbigene

position:10360:1
position: 10360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11740:1
position: 11740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10360-11740:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTND4L
gene: ND4
gene synonym: MTND4L
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11740,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLMLFPTIWLSPAKWLWTTSIAQSLVIALASLSWFKWSSETGWSSSNLYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPLNRQRTYISLLVSLQTFLILAFGATEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDSGTLSMFTLQYTQPLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIVLALWGIIMTGSICLRQTDLKSLIAYSSVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQMILPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSHWTLLLTGLGTLITASYSLYLFLMTQRGPLPSHIIALEPTHTREHLLITLHLIPIILLILKPELMWGWCF
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10360..11740
location: region:10360-11740:1
so has part: feature:10360-11740:1:exon

YP_009026998.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10360-11740:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-His
so part of: sequence
location: 11741..11810
location: region:11741-11810:1
so has part: feature:11741-11810:1:region

position:11741:1
position: 11741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11810:1
position: 11810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11741-11810:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11811..11879
location: region:11811-11879:1
so has part: feature:11811-11879:1:region

position:11811:1
position: 11811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11879:1
position: 11879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11811-11879:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11881..11953
location: region:11881-11953:1
so has part: feature:11881-11953:1:region

position:11881:1
position: 11881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11953:1
position: 11953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11881-11953:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTND5
gene: ND5
gene synonym: MTND5
so part of: sequence
location: 11954..13792
location: region:11954-13792:1
so has part: feature:11954-13792:1:exon
subclass of: SO_0000010

19099185
type: Gene
SIO_000068: ncbigene

position:11954:1
position: 11954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13792:1
position: 13792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11954-13792:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTND5
gene: ND5
gene synonym: MTND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHPTTLILSSTLLMIFALLLYPLITTLNPSPQQENWALTHVKTAVKMAFLVSLLPLFIFLDQGTETIVTNWQWMNTTTFDINLSFKFDHYSIIFTPIALYVTWSILEFASWYMHADPNVNRFFKYLLLFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAAMQAVIYNRVGDIGLILSMAWFATNLNSWEIQQMFASSKELELTLPLMGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMENNQTALTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHSLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLLATSFTAIYSLRVVFFVSMGHPRFTATAPINENNPSVINPIKRLAWGSIIAGLVITSNFLPSKTPVMTMPLPLKLAALLVTISGLLIALELASLTNKQFKTTPNLGTHSLSNMLGFFPTIIHRLAPKLNLVLGQTIASQMVDQTWFEKIGPKGIVSTHLPMVTTTSNIQQGMIKTYLTLFFLSTTLAVLLTLT
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11954..13792
location: region:11954-13792:1
so has part: feature:11954-13792:1:exon

YP_009026999.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11954-13792:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTND6
gene: ND6
gene synonym: MTND6
so part of: sequence
location: complement(13789..14310)
location: region:13789-14310:-1
so has part: feature:13789-14310:-1:exon
subclass of: SO_0000010

19099186
type: Gene
SIO_000068: ncbigene

position:13789:-1
position: 13789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14310:-1
position: 14310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13789-14310:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTND6
gene: ND6
gene synonym: MTND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTYIVSLFLLGLVLGLVAVASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPESWGDRSVLGYVVVYTVGVVLVAGWFWSGWYETSWVAVDEFKEFSVLRGDTSGVALMYSQGGGMLIVCAWVLLLTLFVVLELTRGLSRGALRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13789..14310)
location: region:13789-14310:-1
so has part: feature:13789-14310:-1:exon

YP_009027000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13789-14310:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Glu
so part of: sequence
location: complement(14311..14379)
location: region:14311-14379:-1
so has part: feature:14311-14379:-1:region

position:14311:-1
position: 14311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14379:-1
position: 14379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14311-14379:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 8032
alternative label: MTCYB
gene: CYTB
gene synonym: MTCYB
so part of: sequence
location: 14383..15523
location: region:14383-15523:1
so has part: feature:14383-15523:1:exon
subclass of: SO_0000010

19099187
type: Gene
SIO_000068: ncbigene

position:14383:1
position: 14383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15523:1
position: 15523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14383-15523:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8032
alternative label: MTCYB
gene: CYTB
gene synonym: MTCYB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15523,aa:TERM)
transl table: 2
product: cytochrome b
translation: MANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVCHICRDVSYGWLIRNIHANGASFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGGALVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATVLHLLFLHETGSNNPAGINSDADKISFHPYFSYKDLLGFVAMLLGLTSLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADMLILTWIGGMPVEHPFIIIGQVASVIYFTIFLVLAPLAGWAENKALEWT
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14383..15523
location: region:14383-15523:1
so has part: feature:14383-15523:1:exon

YP_009027001.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14383-15523:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Thr
so part of: sequence
location: 15524..15595
location: region:15524-15595:1
so has part: feature:15524-15595:1:region

position:15524:1
position: 15524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15595:1
position: 15595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15524-15595:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8032
product: tRNA-Pro
so part of: sequence
location: complement(15595..15664)
location: region:15595-15664:-1
so has part: feature:15595-15664:-1:region

position:15595:-1
position: 15595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15664:-1
position: 15664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15595-15664:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 8032
note: control region
so part of: sequence
location: 15665..16677
location: region:15665-16677:1
so has part: feature:15665-16677:1:region

position:15665:1
position: 15665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15665-16677:1:region