Oncorhynchus gorbuscha mitochondrion, complete genome.
type: Entry
definition: Oncorhynchus gorbuscha mitochondrion, complete genome.
sequence version: NC_010959.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_010959.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Oncorhynchus gorbuscha (pink salmon)
organism: Oncorhynchus gorbuscha
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from EF455489.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16785
topology: circular
so has quality: SO_0000988
location: 1..16785
location: region:1-16785:1
RO_0002162: 8017

NC_010959
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The mitogenomic-based phylogenetic relationship among the genus Oncorhynchus
author: Lee, Y.I.
author: Gwo, J.-C.
author: Mayama, H.
author: Fang, S.Y.
author: Tsai, C.-L.
author: Chen, S.F.
author: Chou, Y.C.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (13-JUN-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Lee, Y.I.
author: Gwo, J.-C.
author: Mayama, H.
author: Fang, S.Y.
author: Tsai, C.-L.
author: Chen, S.F.
author: Chou, Y.C.
journal: Submitted (26-FEB-2007) Dept. of Medical Technology, Chung Hwa University of Medical Technology, 89 Wen Hwa 1st St., Jente, Tainan 717, Taiwan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16785:1
position: 16785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16785:1:source
so part of: sequence
organism: Oncorhynchus gorbuscha
organelle: mitochondrion
mol type: genomic DNA

8017
type: Taxonomy
SIO_000068: taxonomy

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 8017
note: control region
so part of: sequence
location: 1..1131
location: region:1-1131:1
so has part: feature:1-1131:1:region

position:1131:1
position: 1131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1131:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Phe
so part of: sequence
location: 1132..1199
location: region:1132-1199:1
so has part: feature:1132-1199:1:region

position:1132:1
position: 1132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1199:1
position: 1199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1132-1199:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8017
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 1200..2146
location: region:1200-2146:1
so has part: feature:1200-2146:1:region

position:1200:1
position: 1200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2146:1
position: 2146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1200-2146:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Val
so part of: sequence
location: 2147..2218
location: region:2147-2218:1
so has part: feature:2147-2218:1:region

position:2147:1
position: 2147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2218:1
position: 2218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2147-2218:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8017
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 2219..3896
location: region:2219-3896:1
so has part: feature:2219-3896:1:region

position:2219:1
position: 2219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3896:1
position: 3896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2219-3896:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 3897..3971
location: region:3897-3971:1
so has part: feature:3897-3971:1:region

position:3897:1
position: 3897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3971:1
position: 3971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3897-3971:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: ND1
so part of: sequence
location: 3972..4946
location: region:3972-4946:1
so has part: feature:3972-4946:1:exon
subclass of: SO_0000010

6383214
type: Gene
SIO_000068: ncbigene

position:3972:1
position: 3972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4946:1
position: 4946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3972-4946:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MITTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPIPYPVTDLNLGVLFVLALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIITGGFTLQTFNVAQESIWLLVPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAVLFLGASHIPAFPELTALNLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKSFLPLTLALVLWHLALPIALAGLPPQL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 3972..4946
location: region:3972-4946:1
so has part: feature:3972-4946:1:exon

YP_001974501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3972-4946:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Ile
so part of: sequence
location: 4950..5021
location: region:4950-5021:1
so has part: feature:4950-5021:1:region

position:4950:1
position: 4950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5021:1
position: 5021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4950-5021:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Gln
so part of: sequence
location: complement(5019..5089)
location: region:5019-5089:-1
so has part: feature:5019-5089:-1:region

position:5019:-1
position: 5019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5089:-1
position: 5089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5019-5089:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Met
so part of: sequence
location: 5089..5157
location: region:5089-5157:1
so has part: feature:5089-5157:1:region

position:5089:1
position: 5089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5157:1
position: 5157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5089-5157:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: ND2
so part of: sequence
location: 5158..6207
location: region:5158-6207:1
so has part: feature:5158-6207:1:exon
subclass of: SO_0000010

6383212
type: Gene
SIO_000068: ncbigene

position:5158:1
position: 5158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6207:1
position: 6207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5158-6207:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: ND2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYVLTILLSSLGLGTVLTFASSHWLLAWMGLEINTLAIIPIMAQQHHPRAIEATTKYFLTQATAAAMILFASTTNAWLVGEWEIHQLSHPLATTTAMLALALKLGLAPVHFWLPEVLQGLELTTGLILSTWQKLAPFALMIQVAPTINSSLLVAIGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMVLILQFAPSLTLLSLSLYIIMTSSAFLTLKTNNSLTINTLAISWTKSPALAALTALVLLSLGGLPPLSGFMPKWLILQELTKQGLPLSATLAAMTALLSLYFYLRLCYALTLTIYPNTLTATAPWRLNFTMITLPLSIVTILALGLLPLTPAVTAMLTL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 5158..6207
location: region:5158-6207:1
so has part: feature:5158-6207:1:exon

YP_001974502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5158-6207:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Trp
so part of: sequence
location: 6210..6289
location: region:6210-6289:1
so has part: feature:6210-6289:1:region

position:6210:1
position: 6210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6289:1
position: 6289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6210-6289:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Ala
so part of: sequence
location: complement(6291..6350)
location: region:6291-6350:-1
so has part: feature:6291-6350:-1:region

position:6291:-1
position: 6291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6350:-1
position: 6350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6291-6350:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Asn
so part of: sequence
location: complement(6352..6424)
location: region:6352-6424:-1
so has part: feature:6352-6424:-1:region

position:6352:-1
position: 6352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6424:-1
position: 6424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6352-6424:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 8017
note: OriL
so part of: sequence
location: complement(6425..6458)
location: region:6425-6458:-1
so has part: feature:6425-6458:-1:region

position:6425:-1
position: 6425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6458:-1
position: 6458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6425-6458:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Cys
so part of: sequence
location: complement(6459..6524)
location: region:6459-6524:-1
so has part: feature:6459-6524:-1:region

position:6459:-1
position: 6459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6524:-1
position: 6524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6459-6524:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Tyr
so part of: sequence
location: complement(6525..6595)
location: region:6525-6595:-1
so has part: feature:6525-6595:-1:region

position:6525:-1
position: 6525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6595:-1
position: 6595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6525-6595:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: COX1
so part of: sequence
location: 6597..8147
location: region:6597-8147:1
so has part: feature:6597-8147:1:exon
subclass of: SO_0000010

6383213
type: Gene
SIO_000068: ncbigene

position:6597:1
position: 6597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8147:1
position: 8147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6597-8147:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGNDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLSSSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGAFVHWFPLFTGFTLHSTWTKIHFGIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLVSLVAVIMFLFILWEAFAAKREVASIEMTSTNVEWLHGCPPPYHTFEEPAFVQVRAY
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 6597..8147
location: region:6597-8147:1
so has part: feature:6597-8147:1:exon

YP_001974503.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6597-8147:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(8148..8218)
location: region:8148-8218:-1
so has part: feature:8148-8218:-1:region

position:8148:-1
position: 8148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8218:-1
position: 8218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8148-8218:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Asp
so part of: sequence
location: 8222..8296
location: region:8222-8296:1
so has part: feature:8222-8296:1:region

position:8222:1
position: 8222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8296:1
position: 8296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8222-8296:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: COX2
so part of: sequence
location: 8311..9001
location: region:8311-9001:1
so has part: feature:8311-9001:1:exon
subclass of: SO_0000010

6383209
type: Gene
SIO_000068: ncbigene

position:8311:1
position: 8311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9001:1
position: 9001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8311-9001:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9001,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHALMIVLLISTLVLYIIVAMVSTKLTNKYILDSQEIEVVWTILPAVILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMVPTQDLVPGQFRLLETDHRMVVPVESPIRILVSAEDVLHSWAVPSLGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFEKWSTMMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 8311..9001
location: region:8311-9001:1
so has part: feature:8311-9001:1:exon

YP_001974504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8311-9001:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Lys
so part of: sequence
location: 9002..9075
location: region:9002-9075:1
so has part: feature:9002-9075:1:region

position:9002:1
position: 9002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9075:1
position: 9075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9002-9075:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: ATP8
so part of: sequence
location: 9077..9244
location: region:9077-9244:1
so has part: feature:9077-9244:1:exon
subclass of: SO_0000010

6383206
type: Gene
SIO_000068: ncbigene

position:9077:1
position: 9077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9244:1
position: 9244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9077-9244:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFAILVFSWLVFLTVIPPKVLGHTFTNEPTSQSTEKAKPEPWNWPWH
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 9077..9244
location: region:9077-9244:1
so has part: feature:9077-9244:1:exon

YP_001974505.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9077-9244:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: ATP6
so part of: sequence
location: 9235..9918
location: region:9235-9918:1
so has part: feature:9235-9918:1:exon
subclass of: SO_0000010

6383207
type: Gene
SIO_000068: ncbigene

position:9235:1
position: 9235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9918:1
position: 9918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9235-9918:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLSFFDQFMSPTYLGIPLIAVALTLPWILFPTPSARWLNNRLITLQGWFINRFTQQLLLPLNLGGHKWAALLTSLMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPLMPTVAILTSIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 9235..9918
location: region:9235-9918:1
so has part: feature:9235-9918:1:exon

YP_001974506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9235-9918:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: COX3
so part of: sequence
location: 9918..10702
location: region:9918-10702:1
so has part: feature:9918-10702:1:exon
subclass of: SO_0000010

6383202
type: Gene
SIO_000068: ncbigene

position:10702:1
position: 10702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9918-10702:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:10701..10702,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAIAALLLTSGTAVWFHFHSLTLLTLGNVLLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHASLAPTPELGGCWPPTGITTLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQTIQALTLTILLGFYFTFLQGMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 9918..10702
location: region:9918-10702:1
so has part: feature:9918-10702:1:exon

YP_001974507.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9918-10702:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Gly
so part of: sequence
location: 10703..10772
location: region:10703-10772:1
so has part: feature:10703-10772:1:region

position:10703:1
position: 10703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10772:1
position: 10772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10703-10772:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: ND3
so part of: sequence
location: 10773..11122
location: region:10773-11122:1
so has part: feature:10773-11122:1:exon
subclass of: SO_0000010

6383208
type: Gene
SIO_000068: ncbigene

position:10773:1
position: 10773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11122:1
position: 11122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10773-11122:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11121..11122,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLITTIITITITLSAVLATISFWLPQISPDAEKLSPYECGFDPLGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWGDQLNTPTLTLIWSTAVLALLTLGLIYEWTQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 10773..11122
location: region:10773-11122:1
so has part: feature:10773-11122:1:exon

YP_001974508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10773-11122:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Arg
so part of: sequence
location: 11123..11191
location: region:11123-11191:1
so has part: feature:11123-11191:1:region

position:11123:1
position: 11123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11191:1
position: 11191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11123-11191:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: ND4L
so part of: sequence
location: 11192..11488
location: region:11192-11488:1
so has part: feature:11192-11488:1:exon
subclass of: SO_0000010

6383210
type: Gene
SIO_000068: ncbigene

position:11192:1
position: 11192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11488:1
position: 11488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11192-11488:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFSFTSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQMEATGYSVAPMLLLAFSACEASAGLALLVATARTHGTDRLQSLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 11192..11488
location: region:11192-11488:1
so has part: feature:11192-11488:1:exon

YP_001974509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11192-11488:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: ND4
so part of: sequence
location: 11482..12862
location: region:11482-12862:1
so has part: feature:11482-12862:1:exon
subclass of: SO_0000010

6383205
type: Gene
SIO_000068: ncbigene

position:11482:1
position: 11482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12862:1
position: 12862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11482-12862:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:12862,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLMLFPTIWLSPAKWLWTTSIAQSLIIALASLSWLKWSSETGWSSSNLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRTYISLLVSLQTFLILAFGATEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDNGTLSMFTLQYTQPLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIVLALWGIIMTGSICLRQTDLKSLIAYSSVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQMILPLMTTWWFIASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLYLFLMTQRGPLPSHIIALEPAHTREHLLIILHLIPIILLILKPELMWGWCF
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 11482..12862
location: region:11482-12862:1
so has part: feature:11482-12862:1:exon

YP_001974510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11482-12862:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-His
so part of: sequence
location: 12863..12931
location: region:12863-12931:1
so has part: feature:12863-12931:1:region

position:12863:1
position: 12863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12931:1
position: 12931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12863-12931:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 12932..13000
location: region:12932-13000:1
so has part: feature:12932-13000:1:region

position:12932:1
position: 12932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13000:1
position: 13000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12932-13000:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 13002..13074
location: region:13002-13074:1
so has part: feature:13002-13074:1:region

position:13002:1
position: 13002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13074:1
position: 13074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13002-13074:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: ND5
so part of: sequence
location: 13075..14913
location: region:13075-14913:1
so has part: feature:13075-14913:1:exon
subclass of: SO_0000010

6383203
type: Gene
SIO_000068: ncbigene

position:13075:1
position: 13075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14913:1
position: 14913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13075-14913:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHPTTLILSSSLLMIFTLLIYPLITTLTPTPQHKNWSLTQVKTAIKMAFLVSLLPLFIFLDQGTETIVTNWQWMNTTTFDINLSFKFDHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYLLLFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRADANTAAMQAVIYNRVGDIGLILSMAWFATNLNSWEIQQMFASSKGLDLTLPLMGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMENNQTALTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHNLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLLATSFTAIYSLRVIFFVSMGHPRFTTTAPINENNPSVINPIKRLAWGSIIAGLLITSNFLPTNTPVMTMPTHLKLAALLVTILGLIIALELASLTSKQFKTTPNLITHNFSNMLGFFPAIIHRLTPKLNLTLGQAIASQMVDQTWFEKVGPKGIISTHLPMVTTTSNIQQGMIKTYLTLFFLSTTLAVLLTLT
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 13075..14913
location: region:13075-14913:1
so has part: feature:13075-14913:1:exon

YP_001974511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13075-14913:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: ND6
so part of: sequence
location: complement(14910..15431)
location: region:14910-15431:-1
so has part: feature:14910-15431:-1:exon
subclass of: SO_0000010

6383211
type: Gene
SIO_000068: ncbigene

position:14910:-1
position: 14910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15431:-1
position: 15431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14910-15431:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTYLVSLFLLGLVLGLVAVASNPAPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPESWGDRSVLGYVVVYMAGVMLVAGLFWGGWYETSWAVVDEFKELSVLRGDTSGVALMYSHGGGMLIACAWVLLLTLFVVLELTRGLSRGALRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(14910..15431)
location: region:14910-15431:-1
so has part: feature:14910-15431:-1:exon

YP_001974512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14910-15431:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Glu
so part of: sequence
location: complement(15432..15500)
location: region:15432-15500:-1
so has part: feature:15432-15500:-1:region

position:15432:-1
position: 15432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15500:-1
position: 15500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15432-15500:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 8017
gene: CYTB
so part of: sequence
location: 15504..16644
location: region:15504-16644:1
so has part: feature:15504-16644:1:exon
subclass of: SO_0000010

6383204
type: Gene
SIO_000068: ncbigene

position:15504:1
position: 15504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16644:1
position: 16644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15504-16644:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8017
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:16644,aa:TERM)
transl table: 2
product: cytochrome b
translation: MANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVCHICRDVSYGWLIRNIHANGASFFFICIYMHIARGLYYGSYLYKETWSIGVVLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGGALVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATVLHLLFLHETGSNNPAGINSDADKISFHPYFSYKDLLGFVAMLLGLTSLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWALVADMLILTWIGGMPVEHPFIIIGQVASVIYFAIFLVLSPLAGWAENKALQWA
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 15504..16644
location: region:15504-16644:1
so has part: feature:15504-16644:1:exon

YP_001974513.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15504-16644:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Thr
so part of: sequence
location: 16645..16716
location: region:16645-16716:1
so has part: feature:16645-16716:1:region

position:16645:1
position: 16645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16716:1
position: 16716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16645-16716:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8017
product: tRNA-Pro
so part of: sequence
location: complement(16716..16785)
location: region:16716-16785:-1
so has part: feature:16716-16785:-1:region

position:16716:-1
position: 16716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16785:-1
position: 16785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16716-16785:-1:region