Erwinia pyrifoliae strain EpK1/15 plasmid pEP48, complete sequence.
type: Entry
definition: Erwinia pyrifoliae strain EpK1/15 plasmid pEP48, complete sequence.
sequence version: NZ_CP023568.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP023568.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07689503
keyword: RefSeq
source: Erwinia pyrifoliae
organism: Erwinia pyrifoliae
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Erwinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP023568.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.10.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 272.82x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 02:03:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,803\nCDSs (total) :: 3,691\nGenes (coding) :: 3,523\nCDSs (with protein) :: 3,523\nGenes (RNA) :: 112\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 13\nPseudo Genes (total) :: 168\nCDSs (without protein) :: 168\nPseudo Genes (ambiguous residues) :: 0 of 168\nPseudo Genes (frameshifted) :: 93 of 168\nPseudo Genes (incomplete) :: 108 of 168\nPseudo Genes (internal stop) :: 44 of 168\nPseudo Genes (multiple problems) :: 60 of 168\nPseudo Genes (short protein) :: 1 of 168\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 48456
topology: circular
so has quality: SO_0000988
location: 1..48456
location: region:1-48456:1
RO_0002162: 79967

NZ_CP023568
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07689503
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Oh, C.-S.
author: Kim, D.
author: Lee, G.M.
journal: Submitted (22-SEP-2017) Department of Horticultural Biotechnology, Kyung Hee University, 1732 Deokyoung-daero, Giheung-gu, Yongin-si, Gyeonggi-do 17104, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48456:1
position: 48456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-48456:1:source
so part of: sequence
organism: Erwinia pyrifoliae
mol type: genomic DNA
strain: EpK1/15
isolation source: Apple twig
host: Apple
plasmid: pEP48
country: South Korea
collection date: 2017-04-12

79967
type: Taxonomy
SIO_000068: taxonomy

CPI84_RS19295
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19295
old locus tag: CPI84_19285
pseudo: true
so part of: sequence
location: 160..1044
location: region:160-1044:1
so has part: feature:160-1044:1:exon
subclass of: SO_0000010

position:160:1
position: 160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1044:1
position: 1044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160-1044:1:exon

CPI84_RS19295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19295
old locus tag: CPI84_19285
inference: COORDINATES: protein motif:HMM:NF013068.2
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS256 family transposase
SIO_010081: CPI84_RS19295
subclass of: SO_0000673
so part of: CPI84_RS19295
location: 160..1044
location: region:160-1044:1
so has part: feature:160-1044:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:160-1044:1:exon

CPI84_RS20350
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS20350
so part of: sequence
location: 1032..1160
location: region:1032-1160:1
so has part: feature:1032-1160:1:exon
subclass of: SO_0000010

position:1032:1
position: 1032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1160:1
position: 1160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1032-1160:1:exon

CPI84_RS20350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS20350
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKVIYLAIEDASKKWNMPIQNWRLAISRFIIEFGDRLSDHI
SIO_010081: CPI84_RS20350
subclass of: SO_0000673
so part of: CPI84_RS20350
location: 1032..1160
location: region:1032-1160:1
so has part: feature:1032-1160:1:exon

WP_280523166.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1032-1160:1:exon

CPI84_RS20305
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS20305
pseudo: true
so part of: sequence
location: complement(<1305..1683)
location: region:1305-1683:-1
so has part: feature:1305-1683:-1:exon
subclass of: SO_0000010

position:1305:-1
position: 1305
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:1683:-1
position: 1683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1305-1683:-1:exon

CPI84_RS20305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS20305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539895.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: CPI84_RS20305
subclass of: SO_0000673
so part of: CPI84_RS20305
location: complement(<1305..1683)
location: region:1305-1683:-1
so has part: feature:1305-1683:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1305-1683:-1:exon

CPI84_RS19300
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19300
old locus tag: CPI84_19290
so part of: sequence
location: complement(2339..2743)
location: region:2339-2743:-1
so has part: feature:2339-2743:-1:exon
subclass of: SO_0000010

position:2339:-1
position: 2339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2743:-1
position: 2743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2339-2743:-1:exon

CPI84_RS19300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19300
old locus tag: CPI84_19290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011113994.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: H-NS family nucleoid-associated regulatory protein
translation: MSETLKVLNNIRTLRAQAREVSLSELEEMLEKLEAVVNERRDAEAAIASEIKEKEEKLAKYRQMLLEDGIDLSELTSAENTSGKPRAKRAPRPAKYEYTDENGEQKSWTGQGRTPAVIKQALDAGKKLEDFLIK
SIO_010081: CPI84_RS19300
subclass of: SO_0000673
so part of: CPI84_RS19300
location: complement(2339..2743)
location: region:2339-2743:-1
so has part: feature:2339-2743:-1:exon

WP_011113994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2339-2743:-1:exon

CPI84_RS19310
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
gene: epo
locus tag: CPI84_RS19310
old locus tag: CPI84_19300
so part of: sequence
location: complement(3525..4463)
location: region:3525-4463:-1
so has part: feature:3525-4463:-1:exon
subclass of: SO_0000010

position:3525:-1
position: 3525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4463:-1
position: 4463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3525-4463:-1:exon

CPI84_RS19310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
gene: epo
locus tag: CPI84_RS19310
old locus tag: CPI84_19300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012814643.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: omptin family outer membrane protease Epo
translation: MKKSTVLVTMMSAFFGTDYVAAAQISPDFSADSISVATSAGILGGKSKELVYDASNARKISQLDWKIKNVAIIKADFSWDAYSFLTLNARGWTSLASGSGHMDDYDWQNSNQSDWTDHSSHPGTDVNYANEYDLNLKGWFLQGSDYKVGAVAGYQETRFSWTATGGSYSYNNGASVGNFPNQRPGIGYSQRFSMPYIGLVGQYRINDFEFNALFKFSDWVRAHDNDEHYMRSLTFREKTSDSRYYGASVDAGYYVTRNAKVFAEFSYSKYEEGKGGTQIIDTISGDSASLDGDAAGISNKNYTATVGVQYRF
SIO_010081: CPI84_RS19310
subclass of: SO_0000673
so part of: CPI84_RS19310
location: complement(3525..4463)
location: region:3525-4463:-1
so has part: feature:3525-4463:-1:exon

WP_012814643.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3525-4463:-1:exon

CPI84_RS19315
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19315
old locus tag: CPI84_19305
so part of: sequence
location: complement(4671..5528)
location: region:4671-5528:-1
so has part: feature:4671-5528:-1:exon
subclass of: SO_0000010

position:4671:-1
position: 4671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5528:-1
position: 5528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4671-5528:-1:exon

CPI84_RS19315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19315
old locus tag: CPI84_19305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012814642.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysR family transcriptional regulator
translation: MDLTQLEIFCAIAEQGSVTAAAEKLHRVPSNISTRLKQLEEELGCALFRREKLRLHITDSGRTFLAYSRRILALSEEAKQSVSGQRPDGVFTLGAIESTAAVRLPPLIARYHQRWPQVGLDLSTGPSGDMIDGVLAGRYSAAFVDGPPKHPQLEGIPVFAEDLVLIGALNHPPVYDASGISGSTIYAFRANCSYRRLFENWFARTHAVPGKIFEMESYHGILACVSAGAGLALIPASMLESMPGRDSVNAWSLSEGMGQIAIWLVWRKGTRSANLQAMKALLTED
SIO_010081: CPI84_RS19315
subclass of: SO_0000673
so part of: CPI84_RS19315
location: complement(4671..5528)
location: region:4671-5528:-1
so has part: feature:4671-5528:-1:exon

WP_012814642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4671-5528:-1:exon

CPI84_RS19320
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19320
old locus tag: CPI84_19310
so part of: sequence
location: 5669..7057
location: region:5669-7057:1
so has part: feature:5669-7057:1:exon
subclass of: SO_0000010

position:5669:1
position: 5669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7057:1
position: 7057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5669-7057:1:exon

CPI84_RS19320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19320
old locus tag: CPI84_19310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012440525.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD-dependent succinate-semialdehyde dehydrogenase
translation: MMKNVSSAVAVSRNPATGEVFARYPFATIAEVDSALALTNGAFQYWRHSAMSDRVQLLCNVADALRQQARELAEMMTSEMGKPVDQGLAEVEKSARLCEWYAGHGPAFLQREPTLVEGNKAFVDYLPLGPVLSVMPWNFPVWQVLRGAVPILLAGNSYLLKPAPNVMGCALLLQQILTRVGVPEGLFAVVNADNDGVAQAINDRRIAAVTVTGSVRAGAAIAALSGAAIKKCVLELGGSDAFIVLADADIDAAVKGAIAGRFMNNGQLCISAKRIIVEAPVFDAFRDKFVSAVKEMKIGDPRESGTWIGPMARYDLRDELDSQVQATLKEGATLLLGGHVLPGEGNYYAPTVLSDVKPGMTSFAQELFGPVASLIQADNAEHAVAMANDSEFGLGGSMWSRDLAVAQKLASRIETGGVFINSPSFSDPRVPIGGVKKSGFGRELSHFGLREFTNTQTVWMEE
SIO_010081: CPI84_RS19320
subclass of: SO_0000673
so part of: CPI84_RS19320
location: 5669..7057
location: region:5669-7057:1
so has part: feature:5669-7057:1:exon

WP_041473957.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5669-7057:1:exon

CPI84_RS19325
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19325
old locus tag: CPI84_19315
so part of: sequence
location: complement(7357..8913)
location: region:7357-8913:-1
so has part: feature:7357-8913:-1:exon
subclass of: SO_0000010

position:7357:-1
position: 7357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8913:-1
position: 8913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7357-8913:-1:exon

CPI84_RS19325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19325
old locus tag: CPI84_19315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009351645.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0007165 - signal transduction [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methyl-accepting chemotaxis protein
translation: MNRWTVKIKLSMSIAMIIISFLILTSFLLSRLTATTSELQNLYERDYQSASIIGRVDGLLTRVDINILRMIAIGDPASIAGWKKQNTENFDKVNELLNKLRPTIDATMTSSFNGLISSYVLMRKGMEHQVQAVESGDIKKASEINRNEVKAYADKTFGALSSLKKHQDEVAENKVVDQKHKDFKTLIISLLAAGVVALISAVLGTVILRSLLRQLGGEPLAAAQEVRLMAGGDLSHPILVKQHDRVSLLAQLKDMQSSLSGLVTNVRSNAESLATASTQISQGNQDLSQRTEEQASSLQQTSATMEQLGSTVSNNAENAHQASQLASGASTLAVEGELMVGRVISTMKVINDSSKKISEIINVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSANAAKEISTLITNSVGQVEQGCLLVDETGATMTRIMEAINQVKYIVSEISAASLEQSSGVKQVGQAITQIDMVTQQNAALVEESAAAAENLKEQAEQLVQAVAVFQVRATAV
SIO_010081: CPI84_RS19325
subclass of: SO_0000673
so part of: CPI84_RS19325
location: complement(7357..8913)
location: region:7357-8913:-1
so has part: feature:7357-8913:-1:exon

WP_041473953.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7357-8913:-1:exon

CPI84_RS19330
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19330
old locus tag: CPI84_19320
so part of: sequence
location: complement(9421..9834)
location: region:9421-9834:-1
so has part: feature:9421-9834:-1:exon
subclass of: SO_0000010

position:9421:-1
position: 9421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9834:-1
position: 9834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9421-9834:-1:exon

CPI84_RS19330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19330
old locus tag: CPI84_19320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011113999.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MLVADIIKAGEALTAVAPFLAGITDKRQHAEALEFVEHLLLNDPENPLLDLVCAKITAYEDTAPEFAEFNAQLAAMPAGVAMIRLLLDQHDLTLSDLPEIGSKSMVSRVLNGERKLTLEHAKKLATRFAISPALFID
SIO_010081: CPI84_RS19330
subclass of: SO_0000673
so part of: CPI84_RS19330
location: complement(9421..9834)
location: region:9421-9834:-1
so has part: feature:9421-9834:-1:exon

WP_011113999.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9421-9834:-1:exon

CPI84_RS19335
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19335
old locus tag: CPI84_19325
so part of: sequence
location: complement(9835..10149)
location: region:9835-10149:-1
so has part: feature:9835-10149:-1:exon
subclass of: SO_0000010

position:9835:-1
position: 9835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10149:-1
position: 10149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9835-10149:-1:exon

CPI84_RS19335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19335
old locus tag: CPI84_19325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000550192.1
GO function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HigB family toxin
translation: MHLISRSMIKDATDKYPQHSRELLALMIAIEKGYFKAPEALKAAFPSLDNLKYLDKHYVINIGRNDLRLVALVFFESQKFYVRHVFTHKEYDVFTALHRTKGKK
SIO_010081: CPI84_RS19335
subclass of: SO_0000673
so part of: CPI84_RS19335
location: complement(9835..10149)
location: region:9835-10149:-1
so has part: feature:9835-10149:-1:exon

WP_041473956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9835-10149:-1:exon

CPI84_RS19340
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19340
old locus tag: CPI84_19330
so part of: sequence
location: complement(10413..10697)
location: region:10413-10697:-1
so has part: feature:10413-10697:-1:exon
subclass of: SO_0000010

position:10413:-1
position: 10413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10697:-1
position: 10697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10413-10697:-1:exon

CPI84_RS19340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19340
old locus tag: CPI84_19330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013036332.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VF530 family DNA-binding protein
translation: MANHSSKDPLHGVTLEALLNMLVARFGWEQLAKRININCFKSDPSIKSSLKFLRRTPWARKEVEDLYIASLKDDHSAKPEMPTDNPWNSRQRKS
SIO_010081: CPI84_RS19340
subclass of: SO_0000673
so part of: CPI84_RS19340
location: complement(10413..10697)
location: region:10413-10697:-1
so has part: feature:10413-10697:-1:exon

WP_011078079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10413-10697:-1:exon

CPI84_RS19345
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19345
old locus tag: CPI84_19335
so part of: sequence
location: complement(10857..11144)
location: region:10857-11144:-1
so has part: feature:10857-11144:-1:exon
subclass of: SO_0000010

position:10857:-1
position: 10857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11144:-1
position: 11144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10857-11144:-1:exon

CPI84_RS19345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19345
old locus tag: CPI84_19335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001742148.1
GO function: GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO process: GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MTYKLKFVPSAEKEWKRLGHPVREQFKKKLAERLENPRVPSAQLHGRKDQYKIKLKSAGYRLVYLVQEHTITIMVMGIGKREGNQIYSDTENRLP
SIO_010081: CPI84_RS19345
subclass of: SO_0000673
so part of: CPI84_RS19345
location: complement(10857..11144)
location: region:10857-11144:-1
so has part: feature:10857-11144:-1:exon

WP_011078058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10857-11144:-1:exon

CPI84_RS19350
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19350
old locus tag: CPI84_19340
so part of: sequence
location: complement(11134..11388)
location: region:11134-11388:-1
so has part: feature:11134-11388:-1:exon
subclass of: SO_0000010

position:11134:-1
position: 11134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11388:-1
position: 11388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11134-11388:-1:exon

CPI84_RS19350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19350
old locus tag: CPI84_19340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000885425.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid stabilization protein
translation: MAFNILTNTAASITDLKRDPMGTVRAAEGETIAILNRNEPAFYCVPPAMYAYLMELAEDAELGCIVDDRMSELPVAKEISLDDL
SIO_010081: CPI84_RS19350
subclass of: SO_0000673
so part of: CPI84_RS19350
location: complement(11134..11388)
location: region:11134-11388:-1
so has part: feature:11134-11388:-1:exon

WP_011078059.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11134-11388:-1:exon

CPI84_RS19355
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19355
old locus tag: CPI84_19345
so part of: sequence
location: complement(11599..12564)
location: region:11599-12564:-1
so has part: feature:11599-12564:-1:exon
subclass of: SO_0000010

position:11599:-1
position: 11599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12564:-1
position: 12564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11599-12564:-1:exon

CPI84_RS19355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19355
old locus tag: CPI84_19345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011078060.1
GO function: GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ThiF family adenylyltransferase
translation: MSRYQRQSMLPEIGESGQRRLAQARVLVIGAGGLGSALLPLLAAAGVGYLRLYDGDRVEEHNLHRQTLYGMQDIGEEKVFCARRALATRNPECVVDARPHALTASATEVALAGIDLAIDAADNFALTYPLSDACLAQRIPLVSASVLGRRGYVGGFCGGAPSYRALFPRLPDSAANCNTAGVMGPAVATLGAMQAQMALSILLNFSPSPLGCLVNCDFAQWHFRQLRFDSATEPDHPPVPFIDRHLLTPEDCIVELRSVNEAPESVADAVQRVLPQQLSGWQPPAERRIVLVCASGIRAAKAAMALELRGFSHLAIIAAGR
SIO_010081: CPI84_RS19355
subclass of: SO_0000673
so part of: CPI84_RS19355
location: complement(11599..12564)
location: region:11599-12564:-1
so has part: feature:11599-12564:-1:exon

WP_011078060.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11599-12564:-1:exon

CPI84_RS19360
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19360
old locus tag: CPI84_19350
so part of: sequence
location: complement(12580..13338)
location: region:12580-13338:-1
so has part: feature:12580-13338:-1:exon
subclass of: SO_0000010

position:12580:-1
position: 12580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13338:-1
position: 13338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12580-13338:-1:exon

CPI84_RS19360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19360
old locus tag: CPI84_19350
EC number: 2.8.1.10
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009093096.1
GO function: GO:1990107 - thiazole synthase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thiazole synthase
translation: MFYDFVPQSRFLLGTAGYPSPQILQQAVMASESEIITVSLRREGSQGGAFRELLTQLNKRILPNTAGCHTVKEAVTTAHMARELFNTRWIKLEVIGHADTLQPDPFALVEAARILCADGFQVFPYTTEDLILGEKLLEAGCELLMPWGAPIGSGQGLRNIEGLRSMRLWFKDIPLIIDAGIGAPSQAAQAMEMGFDGILLNTAVARAQDPLRMAQAFAAAVRAGYDAHGAGLIERRDMATASTPIFGMAQFS
SIO_010081: CPI84_RS19360
subclass of: SO_0000673
so part of: CPI84_RS19360
location: complement(12580..13338)
location: region:12580-13338:-1
so has part: feature:12580-13338:-1:exon

WP_012814638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12580-13338:-1:exon

CPI84_RS19365
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
gene: thiS
locus tag: CPI84_RS19365
old locus tag: CPI84_19355
so part of: sequence
location: complement(13342..13539)
location: region:13342-13539:-1
so has part: feature:13342-13539:-1:exon
subclass of: SO_0000010

position:13342:-1
position: 13342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13539:-1
position: 13539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13342-13539:-1:exon

CPI84_RS19365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
gene: thiS
locus tag: CPI84_RS19365
old locus tag: CPI84_19355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014598218.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]
GO process: GO:0009228 - thiamine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfur carrier protein ThiS
translation: MKIQLNGSAIDTHARTLTELLRERQIDAGCIASAVNGQFVPRSQYDAQPLTEGCELEVLAPMQGG
SIO_010081: CPI84_RS19365
subclass of: SO_0000673
so part of: CPI84_RS19365
location: complement(13342..13539)
location: region:13342-13539:-1
so has part: feature:13342-13539:-1:exon

WP_012814637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13342-13539:-1:exon

CPI84_RS19370
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19370
old locus tag: CPI84_19360
so part of: sequence
location: complement(13536..14468)
location: region:13536-14468:-1
so has part: feature:13536-14468:-1:exon
subclass of: SO_0000010

position:13536:-1
position: 13536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14468:-1
position: 14468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13536-14468:-1:exon

CPI84_RS19370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19370
old locus tag: CPI84_19360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012440519.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MSRWSVIGDGVTGLCVATLLAGRGESLEVITDAHHQPASHLAGGMLAPWCEGESAPSEVVELGQRSSPWWSAHVDGVEHRGTLVVAPPRDAPELTRFARMTHAHRWVKPDTLEPDLAGRFARGLFFAGEAHLDPRRAMQQLREKLQRSGICFHQGKPAGRVIDCRGIHAADELPGLRAVRGEMLLLHCDDVQFSRPVRLLHPRFPCYLVPRTEGRFMLGATMMESHDSSPISARAMMELLSAAYSIHPALAEARILESGTGLRPAWPDHIPEIRHRNGIWYLNGMYRHGFLLAPVMAEKLMQQLTEENLI
SIO_010081: CPI84_RS19370
subclass of: SO_0000673
so part of: CPI84_RS19370
location: complement(13536..14468)
location: region:13536-14468:-1
so has part: feature:13536-14468:-1:exon

WP_041473952.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13536-14468:-1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 79967
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00059
inference: COORDINATES: profile:INFERNAL:1.1.4
note: TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: thiamine pyrophosphate
so part of: sequence
location: complement(14612..14731)
location: region:14612-14731:-1
so has part: feature:14612-14731:-1:region

position:14612:-1
position: 14612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14731:-1
position: 14731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14612-14731:-1:region

CPI84_RS19375
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19375
old locus tag: CPI84_19365
pseudo: true
so part of: sequence
location: complement(14844..>15005)
location: region:14844-15005:-1
so has part: feature:14844-15005:-1:exon
subclass of: SO_0000010

position:14844:-1
position: 14844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15005:-1
position: 15005
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14844-15005:-1:exon

CPI84_RS19375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19375
old locus tag: CPI84_19365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000767836.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Txe/YoeB family addiction module toxin
SIO_010081: CPI84_RS19375
subclass of: SO_0000673
so part of: CPI84_RS19375
location: complement(14844..>15005)
location: region:14844-15005:-1
so has part: feature:14844-15005:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14844-15005:-1:exon

CPI84_RS19380
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19380
old locus tag: CPI84_19370
so part of: sequence
location: 15185..15769
location: region:15185-15769:1
so has part: feature:15185-15769:1:exon
subclass of: SO_0000010

position:15185:1
position: 15185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15769:1
position: 15769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15185-15769:1:exon

CPI84_RS19380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19380
old locus tag: CPI84_19370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114004.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSRVFAYCRVSTLEQTTENQCREIEAAGFSVKPQRLIEEHISGSVAASERPGFIRLIDRMEDGDVLIVTKLDRLGRNAIDIRKTVELLADSDIRVHCLALGGVDLTSPAGKMTMQVISAVAEFERDLLLERTHSGIARAKASGKRFGRPPTLNDDQKQSVLARLSTGMSVSAVAREFNTTRQTILRVRAASLMG
SIO_010081: CPI84_RS19380
subclass of: SO_0000673
so part of: CPI84_RS19380
location: 15185..15769
location: region:15185-15769:1
so has part: feature:15185-15769:1:exon

WP_012814636.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15185-15769:1:exon

CPI84_RS19385
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19385
old locus tag: CPI84_19375
so part of: sequence
location: 16096..16755
location: region:16096-16755:1
so has part: feature:16096-16755:1:exon
subclass of: SO_0000010

position:16096:1
position: 16096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16755:1
position: 16755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16096-16755:1:exon

CPI84_RS19385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19385
old locus tag: CPI84_19375
EC number: 2.1.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009351670.1
GO function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MDIRSEKGASIYTPLILKLYDTWVLNISNNYAWRCNTDNILLPHFKQNMAKSHLDIGVGTGYYLANARQSSDAITLLDLNSNSLAAAKKRIGAHRIKHVLQHDIFTPLPEREKNKYDSVSMYYLLHCLQGNIKEKASAIENASQALTEKGTLHGATILGSGVEHNAFGRYLMKVYNKKGIFSNNFDSLNDLKNVLDHYFDQVNIQQHGVVAVFTAAGKK
SIO_010081: CPI84_RS19385
subclass of: SO_0000673
so part of: CPI84_RS19385
location: 16096..16755
location: region:16096-16755:1
so has part: feature:16096-16755:1:exon

WP_041473951.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16096-16755:1:exon

CPI84_RS19390
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19390
old locus tag: CPI84_19380
so part of: sequence
location: complement(17140..19170)
location: region:17140-19170:-1
so has part: feature:17140-19170:-1:exon
subclass of: SO_0000010

position:17140:-1
position: 17140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19170:-1
position: 19170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17140-19170:-1:exon

CPI84_RS19390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19390
old locus tag: CPI84_19380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114006.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: choline transporter
translation: MPATEIPEKHQKDRINPVVFYTSAVLILLFSLTTILFTDFSDRWINRTLNWVSNTFGWYYLLAATLYIVFVIFMACSRFGSIKLGPEQSKPEFSLMSWAAMLFAAGIGIDLMFFSVAEPVTQYMMPPEGQGQTLAAARQAMVWTLFHYGLTGWSMYALMGIALGYFSYRYGLPLTIRSALYPIFGKRVNGPIGHTVDIAAVLGTIFGIATTLGIGVVQLNYGLKVLFDVPEGLTAQAGLIVLSVIMATISVTSGVNKGIRFLSELNVLLAFGLILFVLFVGDTSFLLNALVLNVGDYINRFMGMTLDSFAFDRPTEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLTIPFIFTLLWLSIFGNSALNEIIHGNLALAQETLAHPERGFYSLLAQYPGFTFSASVATITGLLFYVTSADSGSLVLGNFTSRLADINNDAPNWLRIFWSVTIGVLTMGMLMVNGVTALQKTTVIMGLPFSFVIFFVMAGLYKSLRVEDHRRASATVNTPPVTVDRLNWKQRISRVMNYPGTTHTRKMLDNVCRPAMEEVGRELERRGAKVQVNELPAVEDERLNHLELLVDLADEQSFLYQIWPQRYSVPAFTYRARSGKSDYFRLETFLLEGTQGNDLMDYTKEQIINDILDQYERHLTFLHIHREAPGNSMPFPEV
SIO_010081: CPI84_RS19390
subclass of: SO_0000673
so part of: CPI84_RS19390
location: complement(17140..19170)
location: region:17140-19170:-1
so has part: feature:17140-19170:-1:exon

WP_011114006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17140-19170:-1:exon

CPI84_RS19940
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19940
old locus tag: CPI84_19385
pseudo: true
so part of: sequence
location: 19583..>19752
location: region:19583-19752:1
so has part: feature:19583-19752:1:exon
subclass of: SO_0000010

position:19583:1
position: 19583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19752:1
position: 19752
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19583-19752:1:exon

CPI84_RS19940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19940
old locus tag: CPI84_19385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009351674.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Rpn family recombination-promoting nuclease/putative transposase
SIO_010081: CPI84_RS19940
subclass of: SO_0000673
so part of: CPI84_RS19940
location: 19583..>19752
location: region:19583-19752:1
so has part: feature:19583-19752:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19583-19752:1:exon

CPI84_RS19400
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19400
old locus tag: CPI84_19390
so part of: sequence
location: complement(20808..21620)
location: region:20808-21620:-1
so has part: feature:20808-21620:-1:exon
subclass of: SO_0000010

position:20808:-1
position: 20808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21620:-1
position: 21620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20808-21620:-1:exon

CPI84_RS19400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19400
old locus tag: CPI84_19390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005120221.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MetQ/NlpA family ABC transporter substrate-binding protein
translation: MKKTLMLLAAATLGALNLSAWADTLTVGASNVPHAEILEQAKPILAKQGIDLEIKSFQDYILPNTALASHDIDANYFQHVPYLNSVLKDHAGDQNYDFVSAGAIHIEQIGIYPKNYRSLKDLPENGKVIMRDAVAEEGRILSIFEQQGVIKIKPGISKVDARISDIVENPKHLKFFANVEGALLPQMYNNDEGDAVVINANYAIDAGLDPVKGPIAVESGENNPYANIITVHHGDEKKPDIKALVSVLHSTVIQDWIRTKYKGAVIPVNN
SIO_010081: CPI84_RS19400
subclass of: SO_0000673
so part of: CPI84_RS19400
location: complement(20808..21620)
location: region:20808-21620:-1
so has part: feature:20808-21620:-1:exon

WP_011078065.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20808-21620:-1:exon

CPI84_RS19405
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19405
old locus tag: CPI84_19395
so part of: sequence
location: complement(21640..22308)
location: region:21640-22308:-1
so has part: feature:21640-22308:-1:exon
subclass of: SO_0000010

position:21640:-1
position: 21640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22308:-1
position: 22308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21640-22308:-1:exon

CPI84_RS19405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19405
old locus tag: CPI84_19395
EC number: 7.4.2.11
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005120223.1
GO function: GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO process: GO:0048473 - D-methionine transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methionine ABC transporter permease
translation: MFENLFTHLKLDQLCAATLETLYMTALSGGATFVLGILLGLALFLTARGGLFQNRAIYSVISVLVNVFRSIPFIILIVLLIPFTKTLVGTILGADAALPALIVGAAPFYARLVEIGLREVDKGVIEASRSMGARLSTLIFRVLLPESSPALVSGMTVTLIALVSYSAMAGVIGAGGLGNLAYLEGFQRNHGDVTLVATIMILVIVFIIQFSGDVVTTRLDKR
SIO_010081: CPI84_RS19405
subclass of: SO_0000673
so part of: CPI84_RS19405
location: complement(21640..22308)
location: region:21640-22308:-1
so has part: feature:21640-22308:-1:exon

WP_012814635.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21640-22308:-1:exon

CPI84_RS19410
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19410
old locus tag: CPI84_19400
so part of: sequence
location: complement(22301..23281)
location: region:22301-23281:-1
so has part: feature:22301-23281:-1:exon
subclass of: SO_0000010

position:22301:-1
position: 22301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23281:-1
position: 23281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22301-23281:-1:exon

CPI84_RS19410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19410
old locus tag: CPI84_19400
EC number: 7.4.2.11
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011078067.1
GO function: GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO process: GO:0048473 - D-methionine transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methionine ABC transporter ATP-binding protein
translation: MVFYTIGPQTPQIDKGQIYGIIGYSGAGKSTLIRLLNGLEKPGSGSVTIAGQDIAQASVEALRQARLKISMVFQHFNLLWSRTVSENIAFSLQISGTSKSVIQDRVQELIALVGLVGKEQAYPSQLSGGQKQRVGIARALANNPNVLLCDEATSALDPQTTDAILELLLDINRKLWLTIVLITHEMHVVRKICHRVAVMEEGRIVEEGEVLSLFTHPQQPITRQFVKQTSGYISANVPFNPQLVNIDNGKVLKLTFVGQSTQQPVIGELTLKYGLAFNMLHGIMTQTTNGTFGEIWLQVPASQSQLPRILADLHAYEISTEVVTNV
SIO_010081: CPI84_RS19410
subclass of: SO_0000673
so part of: CPI84_RS19410
location: complement(22301..23281)
location: region:22301-23281:-1
so has part: feature:22301-23281:-1:exon

WP_011078067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22301-23281:-1:exon

CPI84_RS19415
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19415
old locus tag: CPI84_19405
so part of: sequence
location: complement(23295..26291)
location: region:23295-26291:-1
so has part: feature:23295-26291:-1:exon
subclass of: SO_0000010

position:23295:-1
position: 23295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26291:-1
position: 26291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23295-26291:-1:exon

CPI84_RS19415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19415
old locus tag: CPI84_19405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012814634.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MSVDFLTDSQIQSYGCYAAEPNEVQLARYFHLDERDLAFVNQRRGRHNRLGIALQLTTARFLGTFLHDLMQIPDGVRFYVAAQLGIPRPEILSRYAQRDNTRWEHHALIRQHYGYHDFGDFPWTFRLKRLLYVRVWLSNERPGLMFDFATAWLLQYKVLLPAASTLTRIIGEIRERANRRLWRKLASLPDSWQTAQLASLLEVPEGQRVSVMEQLRKGPVAVSGPSFTEALERYTRLRNLEFSRLNFSGLPAIQLRNLARYAGMTSAKYIARMPEVRRLAVLTAFVKAQEISALDDAVDVLDMLILDIAREAKKTGQKKRLRTLKDLDRAALLLARACALLLDENTDESTLRKTIFKSVPVARLAESVDKVNELARPQDTNFQDEMVEQYGRVKRFLPALLRDLHFSSAPDGEHTLAAIHYLAELIGSKKRILDDAPERIITGPWKRLVYDAEGRIQRAGYSLCLLERLQDALRRRDIWLENSERWGDPRQKLLQGKEWQVQRVAVCRALGRPTDGRKATEQMANQRDETWKAVSARFHRNDAVGMCHEGKYPSLTISSLEKLSEPPALTQLSSRVKQLLPPVDLTELLLEIDARTGFTREFTHVSESEARAKDLNVSLCAVLLAEACNIGHEPLIKHNIPALTRHRLSWVKQNYLRAETLVSANARLVDFQSTLELASHWGGGEVASADGMRFVTPVKTVNSGPNRKYFGSGRGITWYNFVSDQYSGFHGIVIPGTLRDSIFVLEGLLEQQTGLNPVEIMTDTAGASDIIFGLFWLLGYQFSPRLADAGEAVFWRIDKNAHYGALDELARGCVALPKIESHWDEIMRASGSLKLGTIHASELIRSLLRSTRPSGLAQAIMEVGRVNKTLYLLNYIDDEDYRRRILTQLNRGEGRHAVARAICYGQRGEIRKRYREGQEGQLGALGLVTNAVVLWNSLYMQEALSHLRSTGETPEDEHIARLSPLMHGHINMLGHYTFTLPEDILKGELRSLNFNLNN
SIO_010081: CPI84_RS19415
subclass of: SO_0000673
so part of: CPI84_RS19415
location: complement(23295..26291)
location: region:23295-26291:-1
so has part: feature:23295-26291:-1:exon

WP_012814634.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23295-26291:-1:exon

CPI84_RS19420
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19420
old locus tag: CPI84_19410
so part of: sequence
location: 26452..27033
location: region:26452-27033:1
so has part: feature:26452-27033:1:exon
subclass of: SO_0000010

position:26452:1
position: 26452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27033:1
position: 27033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26452-27033:1:exon

CPI84_RS19420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19420
old locus tag: CPI84_19410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012814633.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALLGYARVSTSHQKLTLQVAELKNGGVREDRIFTDMMTGATDEREGLQRLLGRAEKDDIIICTKMDRLGRNTADMIHIVDACYKKGIAIRFLENGLSTEGTMGKMVIQILAAVAEAERERILERTNDGRVAAMASGVRFGRKPHPATASALTLIRQGVSFKVVSEKTGISRPTYFRLKRRFTAENKGVSSAM
SIO_010081: CPI84_RS19420
subclass of: SO_0000673
so part of: CPI84_RS19420
location: 26452..27033
location: region:26452-27033:1
so has part: feature:26452-27033:1:exon

WP_012814633.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26452-27033:1:exon

CPI84_RS19425
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19425
old locus tag: CPI84_19415
pseudo: true
so part of: sequence
location: 27052..27871
location: region:27052-27871:1
so has part: feature:27052-27871:1:exon
subclass of: SO_0000010

position:27052:1
position: 27052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27871:1
position: 27871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27052-27871:1:exon

CPI84_RS19425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19425
old locus tag: CPI84_19415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014833243.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF4225 domain-containing protein
SIO_010081: CPI84_RS19425
subclass of: SO_0000673
so part of: CPI84_RS19425
location: 27052..27871
location: region:27052-27871:1
so has part: feature:27052-27871:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27052-27871:1:exon

CPI84_RS19430
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19430
old locus tag: CPI84_19420
so part of: sequence
location: complement(27849..28178)
location: region:27849-28178:-1
so has part: feature:27849-28178:-1:exon
subclass of: SO_0000010

position:27849:-1
position: 27849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28178:-1
position: 28178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27849-28178:-1:exon

CPI84_RS19430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19430
old locus tag: CPI84_19420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003852044.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVSDAALLKSGFSHADLQKLKNNIANYGGSLDSVTHDLANRFNASKWITIAAFTILALTLILASVDTSITLAATLAIVLPFIWYLTPAKLAYKSWRYRRLTTNSEPRQ
SIO_010081: CPI84_RS19430
subclass of: SO_0000673
so part of: CPI84_RS19430
location: complement(27849..28178)
location: region:27849-28178:-1
so has part: feature:27849-28178:-1:exon

WP_041473955.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27849-28178:-1:exon

CPI84_RS19435
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
gene: msrA
locus tag: CPI84_RS19435
old locus tag: CPI84_19425
so part of: sequence
location: 29346..29882
location: region:29346-29882:1
so has part: feature:29346-29882:1:exon
subclass of: SO_0000010

position:29346:1
position: 29346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29882:1
position: 29882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29346-29882:1:exon

CPI84_RS19435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
gene: msrA
locus tag: CPI84_RS19435
old locus tag: CPI84_19425
EC number: 1.8.4.11
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012814649.1
GO function: GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO process: GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptide-methionine (S)-S-oxide reductase MsrA
translation: MATEYAIIAGGCFWCTEAVFKQINGVESVESGYIGGHTENPTYKQVCHGDTGHAEAIRIGFDPEKVSFGDLLDISFATHDPTQLNRQGNDIGTQYRSAIFPTGAQQAEEAKAAISRAQSEHSDPIVTSIEADAVWYPAEDYHQDYWAGEGQENRYCLAVIPPKLQKLRKRFAAYAVSK
SIO_010081: CPI84_RS19435
subclass of: SO_0000673
so part of: CPI84_RS19435
location: 29346..29882
location: region:29346-29882:1
so has part: feature:29346-29882:1:exon

WP_012814649.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29346-29882:1:exon

CPI84_RS19440
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19440
old locus tag: CPI84_19430
pseudo: true
so part of: sequence
location: 29986..>30228
location: region:29986-30228:1
so has part: feature:29986-30228:1:exon
subclass of: SO_0000010

position:29986:1
position: 29986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30228:1
position: 30228
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29986-30228:1:exon

CPI84_RS19440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19440
old locus tag: CPI84_19430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014543172.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: CPI84_RS19440
subclass of: SO_0000673
so part of: CPI84_RS19440
location: 29986..>30228
location: region:29986-30228:1
so has part: feature:29986-30228:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:29986-30228:1:exon

CPI84_RS19450
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
gene: parA
locus tag: CPI84_RS19450
old locus tag: CPI84_19440
so part of: sequence
location: 30698..31324
location: region:30698-31324:1
so has part: feature:30698-31324:1:exon
subclass of: SO_0000010

position:30698:1
position: 30698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31324:1
position: 31324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30698-31324:1:exon

CPI84_RS19450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
gene: parA
locus tag: CPI84_RS19450
old locus tag: CPI84_19440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114011.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MATKIISFLNGKGGVGKTTTSINIATSLARKGHKVAMVDTDPQGSISNWYDESKCQFDLTEASSEKEVYTVRKYLNDYDYVVIDGAAAITAISSAAVMVSDLVLIPVTPSPLDFAACGAILAVVEARENLQPVIARFVITKQVASTRMLEVLKASIEETGVPALKTATAQRQAYIRTMLDGGTVFDTTDGNAKGEIEVMANEILELLE
SIO_010081: CPI84_RS19450
subclass of: SO_0000673
so part of: CPI84_RS19450
location: 30698..31324
location: region:30698-31324:1
so has part: feature:30698-31324:1:exon

WP_011078071.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30698-31324:1:exon

CPI84_RS19455
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19455
old locus tag: CPI84_19445
so part of: sequence
location: 31321..31533
location: region:31321-31533:1
so has part: feature:31321-31533:1:exon
subclass of: SO_0000010

position:31321:1
position: 31321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31533:1
position: 31533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31321-31533:1:exon

CPI84_RS19455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19455
old locus tag: CPI84_19445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014541847.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition protein ParG
translation: MKMKLGQHRQLAPALDAITKPVSGSTKKLQTNIDEKLHRRFKTACFLQGWEMKDVLTGLIEHWLSENEPS
SIO_010081: CPI84_RS19455
subclass of: SO_0000673
so part of: CPI84_RS19455
location: 31321..31533
location: region:31321-31533:1
so has part: feature:31321-31533:1:exon

WP_014540014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31321-31533:1:exon

CPI84_RS19460
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19460
old locus tag: CPI84_19455
so part of: sequence
location: 32779..33756
location: region:32779-33756:1
so has part: feature:32779-33756:1:exon
subclass of: SO_0000010

position:32779:1
position: 32779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33756:1
position: 33756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32779-33756:1:exon

CPI84_RS19460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19460
old locus tag: CPI84_19455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009351627.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MELNKLTVVQGNDLLEGAYSVTLDEMRLLNLALAQIDSRKPQPDALYRLFPHDYQRIYGLNPTSCHRQLREAAESLMKKPVTIYQPDRKSGKTRTVQLSWFSRLEYVSSDEQSAVILRFGQDVAPYLYELKESFTKLNFTNIAKLDTPFSVRLYGWLIKAKNLYGRKISEAIEVTLALDWMREKAGLQGKYEDYRDFRQKLLEPTLARINANTDISVIWHPVKKGRTVVSIRFSYVDESTPEASKPLRPKFPRRPRAAAGSELEGEWARRCIAIMEQYRDCLATYDRTEKVPLTDVRKLAGWYKIIGDKTACKRVMNEVNARAKK
SIO_010081: CPI84_RS19460
subclass of: SO_0000673
so part of: CPI84_RS19460
location: 32779..33756
location: region:32779-33756:1
so has part: feature:32779-33756:1:exon

WP_011078049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32779-33756:1:exon

CPI84_RS19465
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19465
so part of: sequence
location: 34034..34375
location: region:34034-34375:1
so has part: feature:34034-34375:1:exon
subclass of: SO_0000010

position:34034:1
position: 34034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34375:1
position: 34375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34034-34375:1:exon

CPI84_RS19465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19465
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: transposase
translation: MPLLLAADICRSIGVSREQLRLRIRWCSDSFAFRGDNGEKLRVTFAQDCCDRVNGQRLPVVMIKRRCRMAVQNLVMAFSDYNVHYSHSALVIMLATRIDTQEIIAHRQERKSV
SIO_010081: CPI84_RS19465
subclass of: SO_0000673
so part of: CPI84_RS19465
location: 34034..34375
location: region:34034-34375:1
so has part: feature:34034-34375:1:exon

WP_014539990.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34034-34375:1:exon

CPI84_RS19470
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19470
old locus tag: CPI84_19465
pseudo: true
so part of: sequence
location: complement(<34406..>34553)
location: region:34406-34553:-1
so has part: feature:34406-34553:-1:exon
subclass of: SO_0000010

position:34406:-1
position: 34406
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:34553:-1
position: 34553
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34406-34553:-1:exon

CPI84_RS19470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19470
old locus tag: CPI84_19465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611500.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: CPI84_RS19470
subclass of: SO_0000673
so part of: CPI84_RS19470
location: complement(<34406..>34553)
location: region:34406-34553:-1
so has part: feature:34406-34553:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:34406-34553:-1:exon

CPI84_RS19475
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19475
old locus tag: CPI84_19470
so part of: sequence
location: 34626..35834
location: region:34626-35834:1
so has part: feature:34626-35834:1:exon
subclass of: SO_0000010

position:34626:1
position: 34626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35834:1
position: 35834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34626-35834:1:exon

CPI84_RS19475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19475
old locus tag: CPI84_19470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS256 family transposase
translation: MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHPGHEKNAPKAGSNTRNGYSSKTVLCDDGEIELSTPRDRENTSQPQLIKKSQTRITQMDSQILSLYAKGMTTREIVATFREMYDADVSPTLISKVTDAVKEQVAEWQTRPLDALYPIVYLDCIVVKVRHGGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTNIQLCIIHMVRNSLKYVSWKDYKAVTGGLKTVYQAPTEEAALMALDKFAGIWDEKYPQISKSWRAHWENINTFFGYPADIRKAIYTTNAIESLNSVIRAAIKKRKVFPTDDSVRKVIYLAIEDASKKWNMPIQNWRLAISRFIIEFGDRLSDHI
SIO_010081: CPI84_RS19475
subclass of: SO_0000673
so part of: CPI84_RS19475
location: 34626..35834
location: region:34626-35834:1
so has part: feature:34626-35834:1:exon

WP_012814645.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34626-35834:1:exon

CPI84_RS20310
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS20310
pseudo: true
so part of: sequence
location: complement(<35931..36359)
location: region:35931-36359:-1
so has part: feature:35931-36359:-1:exon
subclass of: SO_0000010

position:35931:-1
position: 35931
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:36359:-1
position: 36359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35931-36359:-1:exon

CPI84_RS20310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS20310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539895.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: CPI84_RS20310
subclass of: SO_0000673
so part of: CPI84_RS20310
location: complement(<35931..36359)
location: region:35931-36359:-1
so has part: feature:35931-36359:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:35931-36359:-1:exon

CPI84_RS19485
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19485
old locus tag: CPI84_19480
so part of: sequence
location: complement(37015..37419)
location: region:37015-37419:-1
so has part: feature:37015-37419:-1:exon
subclass of: SO_0000010

position:37015:-1
position: 37015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37419:-1
position: 37419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37015-37419:-1:exon

CPI84_RS19485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19485
old locus tag: CPI84_19480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011113994.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: H-NS family nucleoid-associated regulatory protein
translation: MSETLKVLNNIRTLRAQAREVSLSELEEMLEKLEAVVNERRDAEAAIASEIKEKEEKLAKYRQMLLEDGIDLSELTSAENTSGKPRAKRAPRPAKYEYTDENGEQKSWTGQGRTPAVIKQALDAGKKLEDFLIK
SIO_010081: CPI84_RS19485
subclass of: SO_0000673
so part of: CPI84_RS19485
location: complement(37015..37419)
location: region:37015-37419:-1
so has part: feature:37015-37419:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:37015-37419:-1:exon

CPI84_RS19495
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
gene: epo
locus tag: CPI84_RS19495
old locus tag: CPI84_19490
so part of: sequence
location: complement(38202..39140)
location: region:38202-39140:-1
so has part: feature:38202-39140:-1:exon
subclass of: SO_0000010

position:38202:-1
position: 38202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39140:-1
position: 39140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38202-39140:-1:exon

CPI84_RS19495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
gene: epo
locus tag: CPI84_RS19495
old locus tag: CPI84_19490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012814643.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: omptin family outer membrane protease Epo
translation: MKKSTVLVTMMSAFFGTDYVAAAQISPDFSADSISVATSAGILGGKSKELVYDASNARKISQLDWKIKNVAIIKADFSWDAYSFLTLNARGWTSLASGSGHMDDYDWQNSNQSDWTDHSSHPGTDVNYANEYDLNLKGWFLQGSDYKVGAVAGYQETRFSWTATGGSYSYNNGASVGNFPNQRPGIGYSQRFSMPYIGLVGQYRINDFEFNALFKFSDWVRAHDNDEHYMRSLTFREKTSDSRYYGASVDAGYYVTRNAKVFAEFSYSKYEEGKGGTQIIDTISGDSASLDGDAAGISNKNYTATVGVQYRF
SIO_010081: CPI84_RS19495
subclass of: SO_0000673
so part of: CPI84_RS19495
location: complement(38202..39140)
location: region:38202-39140:-1
so has part: feature:38202-39140:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:38202-39140:-1:exon

CPI84_RS19500
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19500
old locus tag: CPI84_19495
so part of: sequence
location: complement(39348..40205)
location: region:39348-40205:-1
so has part: feature:39348-40205:-1:exon
subclass of: SO_0000010

position:39348:-1
position: 39348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40205:-1
position: 40205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39348-40205:-1:exon

CPI84_RS19500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19500
old locus tag: CPI84_19495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012814642.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysR family transcriptional regulator
translation: MDLTQLEIFCAIAEQGSVTAAAEKLHRVPSNISTRLKQLEEELGCALFRREKLRLHITDSGRTFLAYSRRILALSEEAKQSVSGQRPDGVFTLGAIESTAAVRLPPLIARYHQRWPQVGLDLSTGPSGDMIDGVLAGRYSAAFVDGPPKHPQLEGIPVFAEDLVLIGALNHPPVYDASGISGSTIYAFRANCSYRRLFENWFARTHAVPGKIFEMESYHGILACVSAGAGLALIPASMLESMPGRDSVNAWSLSEGMGQIAIWLVWRKGTRSANLQAMKALLTED
SIO_010081: CPI84_RS19500
subclass of: SO_0000673
so part of: CPI84_RS19500
location: complement(39348..40205)
location: region:39348-40205:-1
so has part: feature:39348-40205:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:39348-40205:-1:exon

CPI84_RS19505
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19505
old locus tag: CPI84_19500
so part of: sequence
location: 40346..41734
location: region:40346-41734:1
so has part: feature:40346-41734:1:exon
subclass of: SO_0000010

position:40346:1
position: 40346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41734:1
position: 41734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40346-41734:1:exon

CPI84_RS19505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19505
old locus tag: CPI84_19500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012440525.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD-dependent succinate-semialdehyde dehydrogenase
translation: MMKNVSSAVAVSRNPATGEVFARYPFATIAEVDSALALTNGAFQYWRHSAMSDRVQLLCNVADALRQQARELAEMMTSEMGKPVDQGLAEVEKSARLCEWYAGHGPAFLQREPTLVEGNKAFVDYLPLGPVLSVMPWNFPVWQVLRGAVPILLAGNSYLLKPAPNVMGCALLLQQILTRVGVPEGLFAVVNADNDGVAQAINDRRIAAVTVTGSVRAGAAIAALSGAAIKKCVLELGGSDAFIVLADADIDAAVKGAIAGRFMNNGQLCISAKRIIVEAPVFDAFRDKFVSAVKEMKIGDPRESGTWIGPMARYDLRDELDSQVQATLKEGATLLLGGHVLPGEGNYYAPTVLSDVKPGMTSFAQELFGPVASLIQADNAEHAVAMANDSEFGLGGSMWSRDLAVAQKLASRIETGGVFINSPSFSDPRVPIGGVKKSGFGRELSHFGLREFTNTQTVWMEE
SIO_010081: CPI84_RS19505
subclass of: SO_0000673
so part of: CPI84_RS19505
location: 40346..41734
location: region:40346-41734:1
so has part: feature:40346-41734:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40346-41734:1:exon

CPI84_RS19510
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19510
old locus tag: CPI84_19505
so part of: sequence
location: complement(42034..43590)
location: region:42034-43590:-1
so has part: feature:42034-43590:-1:exon
subclass of: SO_0000010

position:42034:-1
position: 42034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43590:-1
position: 43590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42034-43590:-1:exon

CPI84_RS19510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19510
old locus tag: CPI84_19505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009351645.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0007165 - signal transduction [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methyl-accepting chemotaxis protein
translation: MNRWTVKIKLSMSIAMIIISFLILTSFLLSRLTATTSELQNLYERDYQSASIIGRVDGLLTRVDINILRMIAIGDPASIAGWKKQNTENFDKVNELLNKLRPTIDATMTSSFNGLISSYVLMRKGMEHQVQAVESGDIKKASEINRNEVKAYADKTFGALSSLKKHQDEVAENKVVDQKHKDFKTLIISLLAAGVVALISAVLGTVILRSLLRQLGGEPLAAAQEVRLMAGGDLSHPILVKQHDRVSLLAQLKDMQSSLSGLVTNVRSNAESLATASTQISQGNQDLSQRTEEQASSLQQTSATMEQLGSTVSNNAENAHQASQLASGASTLAVEGELMVGRVISTMKVINDSSKKISEIINVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSANAAKEISTLITNSVGQVEQGCLLVDETGATMTRIMEAINQVKYIVSEISAASLEQSSGVKQVGQAITQIDMVTQQNAALVEESAAAAENLKEQAEQLVQAVAVFQVRATAV
SIO_010081: CPI84_RS19510
subclass of: SO_0000673
so part of: CPI84_RS19510
location: complement(42034..43590)
location: region:42034-43590:-1
so has part: feature:42034-43590:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42034-43590:-1:exon

CPI84_RS19515
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19515
old locus tag: CPI84_19510
so part of: sequence
location: complement(44098..44511)
location: region:44098-44511:-1
so has part: feature:44098-44511:-1:exon
subclass of: SO_0000010

position:44098:-1
position: 44098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44511:-1
position: 44511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44098-44511:-1:exon

CPI84_RS19515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19515
old locus tag: CPI84_19510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011113999.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MLVADIIKAGEALTAVAPFLAGITDKRQHAEALEFVEHLLLNDPENPLLDLVCAKITAYEDTAPEFAEFNAQLAAMPAGVAMIRLLLDQHDLTLSDLPEIGSKSMVSRVLNGERKLTLEHAKKLATRFAISPALFID
SIO_010081: CPI84_RS19515
subclass of: SO_0000673
so part of: CPI84_RS19515
location: complement(44098..44511)
location: region:44098-44511:-1
so has part: feature:44098-44511:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:44098-44511:-1:exon

CPI84_RS19520
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19520
old locus tag: CPI84_19515
so part of: sequence
location: complement(44512..44826)
location: region:44512-44826:-1
so has part: feature:44512-44826:-1:exon
subclass of: SO_0000010

position:44512:-1
position: 44512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44826:-1
position: 44826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44512-44826:-1:exon

CPI84_RS19520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19520
old locus tag: CPI84_19515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000550192.1
GO function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HigB family toxin
translation: MHLISRSMIKDATDKYPQHSRELLALMIAIEKGYFKAPEALKAAFPSLDNLKYLDKHYVINIGRNDLRLVALVFFESQKFYVRHVFTHKEYDVFTALHRTKGKK
SIO_010081: CPI84_RS19520
subclass of: SO_0000673
so part of: CPI84_RS19520
location: complement(44512..44826)
location: region:44512-44826:-1
so has part: feature:44512-44826:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:44512-44826:-1:exon

CPI84_RS19525
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19525
old locus tag: CPI84_19520
so part of: sequence
location: complement(45090..45374)
location: region:45090-45374:-1
so has part: feature:45090-45374:-1:exon
subclass of: SO_0000010

position:45090:-1
position: 45090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45374:-1
position: 45374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45090-45374:-1:exon

CPI84_RS19525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19525
old locus tag: CPI84_19520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013036332.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VF530 family DNA-binding protein
translation: MANHSSKDPLHGVTLEALLNMLVARFGWEQLAKRININCFKSDPSIKSSLKFLRRTPWARKEVEDLYIASLKDDHSAKPEMPTDNPWNSRQRKS
SIO_010081: CPI84_RS19525
subclass of: SO_0000673
so part of: CPI84_RS19525
location: complement(45090..45374)
location: region:45090-45374:-1
so has part: feature:45090-45374:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:45090-45374:-1:exon

CPI84_RS19530
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19530
old locus tag: CPI84_19525
so part of: sequence
location: complement(45534..45821)
location: region:45534-45821:-1
so has part: feature:45534-45821:-1:exon
subclass of: SO_0000010

position:45534:-1
position: 45534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45821:-1
position: 45821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45534-45821:-1:exon

CPI84_RS19530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19530
old locus tag: CPI84_19525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001742148.1
GO function: GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO process: GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MTYKLKFVPSAEKEWKRLGHPVREQFKKKLAERLENPRVPSAQLHGRKDQYKIKLKSAGYRLVYLVQEHTITIMVMGIGKREGNQIYSDTENRLP
SIO_010081: CPI84_RS19530
subclass of: SO_0000673
so part of: CPI84_RS19530
location: complement(45534..45821)
location: region:45534-45821:-1
so has part: feature:45534-45821:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:45534-45821:-1:exon

CPI84_RS19535
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19535
old locus tag: CPI84_19530
so part of: sequence
location: complement(45811..46065)
location: region:45811-46065:-1
so has part: feature:45811-46065:-1:exon
subclass of: SO_0000010

position:45811:-1
position: 45811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46065:-1
position: 46065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45811-46065:-1:exon

CPI84_RS19535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19535
old locus tag: CPI84_19530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000885425.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid stabilization protein
translation: MAFNILTNTAASITDLKRDPMGTVRAAEGETIAILNRNEPAFYCVPPAMYAYLMELAEDAELGCIVDDRMSELPVAKEISLDDL
SIO_010081: CPI84_RS19535
subclass of: SO_0000673
so part of: CPI84_RS19535
location: complement(45811..46065)
location: region:45811-46065:-1
so has part: feature:45811-46065:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:45811-46065:-1:exon

CPI84_RS19540
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19540
old locus tag: CPI84_19535
so part of: sequence
location: complement(46276..47241)
location: region:46276-47241:-1
so has part: feature:46276-47241:-1:exon
subclass of: SO_0000010

position:46276:-1
position: 46276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47241:-1
position: 47241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46276-47241:-1:exon

CPI84_RS19540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19540
old locus tag: CPI84_19535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011078060.1
GO function: GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ThiF family adenylyltransferase
translation: MSRYQRQSMLPEIGESGQRRLAQARVLVIGAGGLGSALLPLLAAAGVGYLRLYDGDRVEEHNLHRQTLYGMQDIGEEKVFCARRALATRNPECVVDARPHALTASATEVALAGIDLAIDAADNFALTYPLSDACLAQRIPLVSASVLGRRGYVGGFCGGAPSYRALFPRLPDSAANCNTAGVMGPAVATLGAMQAQMALSILLNFSPSPLGCLVNCDFAQWHFRQLRFDSATEPDHPPVPFIDRHLLTPEDCIVELRSVNEAPESVADAVQRVLPQQLSGWQPPAERRIVLVCASGIRAAKAAMALELRGFSHLAIIAAGR
SIO_010081: CPI84_RS19540
subclass of: SO_0000673
so part of: CPI84_RS19540
location: complement(46276..47241)
location: region:46276-47241:-1
so has part: feature:46276-47241:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:46276-47241:-1:exon

CPI84_RS19545
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19545
old locus tag: CPI84_19540
pseudo: true
so part of: sequence
location: complement(47257..48014)
location: region:47257-48014:-1
so has part: feature:47257-48014:-1:exon
subclass of: SO_0000010

position:47257:-1
position: 47257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48014:-1
position: 48014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47257-48014:-1:exon

CPI84_RS19545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19545
old locus tag: CPI84_19540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009093096.1
GO function: GO:1990107 - thiazole synthase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: thiazole synthase
SIO_010081: CPI84_RS19545
subclass of: SO_0000673
so part of: CPI84_RS19545
location: complement(47257..48014)
location: region:47257-48014:-1
so has part: feature:47257-48014:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:47257-48014:-1:exon

CPI84_RS19555
type: Gene
subclass of: SO_0000704
RO_0002162: 79967
locus tag: CPI84_RS19555
old locus tag: CPI84_19550
pseudo: true
so part of: sequence
location: complement(48213..>48454)
location: region:48213-48454:-1
so has part: feature:48213-48454:-1:exon
subclass of: SO_0000010

position:48213:-1
position: 48213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48454:-1
position: 48454
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48213-48454:-1:exon

CPI84_RS19555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79967
locus tag: CPI84_RS19555
old locus tag: CPI84_19550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009093098.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
SIO_010081: CPI84_RS19555
subclass of: SO_0000673
so part of: CPI84_RS19555
location: complement(48213..>48454)
location: region:48213-48454:-1
so has part: feature:48213-48454:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:48213-48454:-1:exon